Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 6160 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 5 6 7 8 9 10 11 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1aig:L (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 9115209
    2 1aig:L (2.6) BS02 BCL ? GO:0009772 ... P0C0Y8 9115209
    3 1aig:L (2.6) BS07 BCL ? GO:0009772 ... P0C0Y8 9115209
    4 1aig:M (2.6) BS01 BCL ? GO:0009772 ... P0C0Y9 9115209
    5 1aig:M (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 9115209
    6 1aig:M (2.6) BS06 BCL ? GO:0009772 ... P0C0Y9 9115209
    7 1aig:N (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 9115209
    8 1aig:N (2.6) BS02 BCL ? GO:0009772 ... P0C0Y8 9115209
    9 1aig:N (2.6) BS03 BCL ? GO:0009772 ... P0C0Y8 9115209
    10 1aig:O (2.6) BS01 BCL ? GO:0009772 ... P0C0Y9 9115209
    11 1aig:O (2.6) BS02 BCL ? GO:0009772 ... P0C0Y9 9115209
    12 1aig:O (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 9115209
    13 1aij:L (2.2) BS01 BCL ? GO:0009772 ... P0C0Y8 9115209
    14 1aij:L (2.2) BS02 BCL ? GO:0009772 ... P0C0Y8 9115209
    15 1aij:L (2.2) BS07 BCL ? GO:0009772 ... P0C0Y8 9115209
    16 1aij:M (2.2) BS01 BCL ? GO:0009772 ... P0C0Y9 9115209
    17 1aij:M (2.2) BS05 BCL ? GO:0009772 ... P0C0Y9 9115209
    18 1aij:M (2.2) BS06 BCL ? GO:0009772 ... P0C0Y9 9115209
    19 1aij:R (2.2) BS01 BCL ? GO:0009772 ... P0C0Y8 9115209
    20 1aij:R (2.2) BS02 BCL ? GO:0009772 ... P0C0Y8 9115209
    21 1aij:R (2.2) BS06 BCL ? GO:0009772 ... P0C0Y8 9115209
    22 1aij:S (2.2) BS01 BCL ? GO:0009772 ... P0C0Y9 9115209
    23 1aij:S (2.2) BS04 BCL ? GO:0009772 ... P0C0Y9 9115209
    24 1aij:S (2.2) BS05 BCL ? GO:0009772 ... P0C0Y9 9115209
    25 1ds8:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 10677497
    26 1ds8:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 10677497
    27 1ds8:L (2.5) BS03 BCL ? GO:0009772 ... P0C0Y8 10677497
    28 1ds8:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 10677497
    29 1ds8:M (2.5) BS02 BCL ? GO:0009772 ... P0C0Y9 10677497
    30 1ds8:M (2.5) BS06 BCL ? GO:0009772 ... P0C0Y9 10677497
    31 1ds8:R (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 10677497
    32 1ds8:R (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 10677497
    33 1ds8:R (2.5) BS03 BCL ? GO:0009772 ... P0C0Y8 10677497
    34 1ds8:S (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 10677497
    35 1ds8:S (2.5) BS02 BCL ? GO:0009772 ... P0C0Y9 10677497
    36 1ds8:S (2.5) BS05 BCL ? GO:0009772 ... P0C0Y9 10677497
    37 1dv3:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 10677497
    38 1dv3:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 10677497
    39 1dv3:L (2.5) BS06 BCL ? GO:0009772 ... P0C0Y8 10677497
    40 1dv3:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 10677497
    41 1dv3:M (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 10677497
    42 1dv3:M (2.5) BS05 BCL ? GO:0009772 ... P0C0Y9 10677497
    43 1dv3:R (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 10677497
    44 1dv3:R (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 10677497
    45 1dv3:R (2.5) BS06 BCL ? GO:0009772 ... P0C0Y8 10677497
    46 1dv3:S (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 10677497
    47 1dv3:S (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 10677497
    48 1dv3:S (2.5) BS05 BCL ? GO:0009772 ... P0C0Y9 10677497
    49 1dv6:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 10677497
    50 1dv6:L (2.5) BS05 BCL ? GO:0009772 ... P0C0Y8 10677497
    51 1dv6:L (2.5) BS06 BCL ? GO:0009772 ... P0C0Y8 10677497
    52 1dv6:M (2.5) BS03 BCL ? GO:0009772 ... P0C0Y9 10677497
    53 1dv6:M (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 10677497
    54 1dv6:M (2.5) BS05 BCL ? GO:0009772 ... P0C0Y9 10677497
    55 1dv6:R (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 10677497
    56 1dv6:R (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 10677497
    57 1dv6:R (2.5) BS06 BCL ? GO:0009772 ... P0C0Y8 10677497
    58 1dv6:S (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 10677497
    59 1dv6:S (2.5) BS04 BCL ? GO:0009772 ... P0C0Y9 10677497
    60 1dv6:S (2.5) BS05 BCL ? GO:0009772 ... P0C0Y9 10677497
    61 1e14:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 10821666
    62 1e14:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 10821666
    63 1e14:L (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 10821666
    64 1e14:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 10821666
    65 1e14:M (2.7) BS03 BCL ? GO:0009772 ... P0C0Y9 10821666
    66 1e14:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 10821666
    67 1e6d:L (2.3) BS01 BCL ? GO:0009772 ... P0C0Y8 11042110
    68 1e6d:L (2.3) BS02 BCL ? GO:0009772 ... P0C0Y8 11042110
    69 1e6d:L (2.3) BS05 BCL ? GO:0009772 ... P0C0Y8 11042110
    70 1e6d:M (2.3) BS01 BCL ? GO:0009772 ... P0C0Y9 11042110
    71 1e6d:M (2.3) BS03 BCL ? GO:0009772 ... P0C0Y9 11042110
    72 1e6d:M (2.3) BS04 BCL ? GO:0009772 ... P0C0Y9 11042110
    73 1eys:L (2.2) BS01 BCL N/A GO:0009772 ... N/A 11095707
    74 1eys:L (2.2) BS02 BCL N/A GO:0009772 ... N/A 11095707
    75 1eys:L (2.2) BS05 BCL N/A GO:0009772 ... N/A 11095707
    76 1eys:M (2.2) BS01 BCL N/A GO:0009772 ... N/A 11095707
    77 1eys:M (2.2) BS04 BCL N/A GO:0009772 ... N/A 11095707
    78 1eys:M (2.2) BS05 BCL N/A GO:0009772 ... N/A 11095707
    79 1f6n:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 11284681
    80 1f6n:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 11284681
    81 1f6n:L (2.8) BS03 BCL ? GO:0009772 ... P0C0Y8 11284681
    82 1f6n:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 11284681
    83 1f6n:M (2.8) BS02 BCL ? GO:0009772 ... P0C0Y9 11284681
    84 1f6n:M (2.8) BS05 BCL ? GO:0009772 ... P0C0Y9 11284681
    85 1fnp:L (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 11284681
    86 1fnp:L (2.6) BS02 BCL ? GO:0009772 ... P0C0Y8 11284681
    87 1fnp:L (2.6) BS06 BCL ? GO:0009772 ... P0C0Y8 11284681
    88 1fnp:M (2.6) BS01 BCL ? GO:0009772 ... P0C0Y9 11284681
    89 1fnp:M (2.6) BS04 BCL ? GO:0009772 ... P0C0Y9 11284681
    90 1fnp:M (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 11284681
    91 1fnq:L (2.6) BS01 BCL ? GO:0009772 ... P0C0Y8 11284681
    92 1fnq:L (2.6) BS02 BCL ? GO:0009772 ... P0C0Y8 11284681
    93 1fnq:L (2.6) BS06 BCL ? GO:0009772 ... P0C0Y8 11284681
    94 1fnq:M (2.6) BS01 BCL ? GO:0009772 ... P0C0Y9 11284681
    95 1fnq:M (2.6) BS04 BCL ? GO:0009772 ... P0C0Y9 11284681
    96 1fnq:M (2.6) BS05 BCL ? GO:0009772 ... P0C0Y9 11284681
    97 1ijd:A (3.0) BS01 BCL ? GO:0005886 ... P35089 11467938
    98 1ijd:A (3.0) BS02 BCL ? GO:0005886 ... P35089 11467938
    99 1ijd:A (3.0) BS04 BCL ? GO:0005886 ... P35089 11467938
    100 1ijd:B (3.0) BS01 BCL ? GO:0005886 ... P35094 11467938
    101 1ijd:B (3.0) BS02 BCL ? GO:0005886 ... P35094 11467938
    102 1ijd:B (3.0) BS04 BCL ? GO:0005886 ... P35094 11467938
    103 1ijd:C (3.0) BS02 BCL ? GO:0005886 ... P35089 11467938
    104 1ijd:C (3.0) BS03 BCL ? GO:0005886 ... P35089 11467938
    105 1ijd:C (3.0) BS05 BCL ? GO:0005886 ... P35089 11467938
    106 1ijd:D (3.0) BS01 BCL ? GO:0005886 ... P35094 11467938
    107 1ijd:D (3.0) BS02 BCL ? GO:0005886 ... P35094 11467938
    108 1ijd:D (3.0) BS04 BCL ? GO:0005886 ... P35094 11467938
    109 1ijd:E (3.0) BS02 BCL ? GO:0005886 ... P35089 11467938
    110 1ijd:E (3.0) BS03 BCL ? GO:0005886 ... P35089 11467938
    111 1ijd:E (3.0) BS05 BCL ? GO:0005886 ... P35089 11467938
    112 1ijd:F (3.0) BS01 BCL ? GO:0005886 ... P35094 11467938
    113 1ijd:F (3.0) BS02 BCL ? GO:0005886 ... P35094 11467938
    114 1ijd:F (3.0) BS04 BCL ? GO:0005886 ... P35094 11467938
    115 1jgw:L (2.8) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    116 1jgw:L (2.8) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    117 1jgw:L (2.8) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    118 1jgw:M (2.8) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    119 1jgw:M (2.8) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    120 1jgw:M (2.8) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    121 1jgx:L (3.01) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    122 1jgx:L (3.01) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    123 1jgx:L (3.01) BS03 BCL ? GO:0009772 ... P0C0Y8 11526320
    124 1jgx:M (3.01) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    125 1jgx:M (3.01) BS02 BCL ? GO:0009772 ... P0C0Y9 11526320
    126 1jgx:M (3.01) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    127 1jgy:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    128 1jgy:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    129 1jgy:L (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    130 1jgy:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    131 1jgy:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    132 1jgy:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    133 1jgz:L (2.7) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    134 1jgz:L (2.7) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    135 1jgz:L (2.7) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    136 1jgz:M (2.7) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    137 1jgz:M (2.7) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    138 1jgz:M (2.7) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    139 1jh0:L (3.5) BS01 BCL ? GO:0009772 ... P0C0Y8 11526320
    140 1jh0:L (3.5) BS02 BCL ? GO:0009772 ... P0C0Y8 11526320
    141 1jh0:L (3.5) BS05 BCL ? GO:0009772 ... P0C0Y8 11526320
    142 1jh0:M (3.5) BS01 BCL ? GO:0009772 ... P0C0Y9 11526320
    143 1jh0:M (3.5) BS04 BCL ? GO:0009772 ... P0C0Y9 11526320
    144 1jh0:M (3.5) BS05 BCL ? GO:0009772 ... P0C0Y9 11526320
    145 1k6l:L (3.1) BS01 BCL ? GO:0009772 ... P0C0Y8 11993994
    146 1k6l:L (3.1) BS02 BCL ? GO:0009772 ... P0C0Y8 11993994
    147 1k6l:L (3.1) BS06 BCL ? GO:0009772 ... P0C0Y8 11993994
    148 1k6l:M (3.1) BS01 BCL ? GO:0009772 ... P0C0Y9 11993994
    149 1k6l:M (3.1) BS04 BCL ? GO:0009772 ... P0C0Y9 11993994
    150 1k6l:M (3.1) BS05 BCL ? GO:0009772 ... P0C0Y9 11993994
    151 1k6n:L (3.1) BS01 BCL ? GO:0009772 ... P0C0Y8 11993994
    152 1k6n:L (3.1) BS02 BCL ? GO:0009772 ... P0C0Y8 11993994
    153 1k6n:L (3.1) BS06 BCL ? GO:0009772 ... P0C0Y8 11993994
    154 1k6n:M (3.1) BS01 BCL ? GO:0009772 ... P0C0Y9 11993994
    155 1k6n:M (3.1) BS04 BCL ? GO:0009772 ... P0C0Y9 11993994
    156 1k6n:M (3.1) BS05 BCL ? GO:0009772 ... P0C0Y9 11993994
    157 1kby:L (2.5) BS01 BCL ? GO:0009772 ... P0C0Y8 16228547
    158 1kby:L (2.5) BS02 BCL ? GO:0009772 ... P0C0Y8 16228547
    159 1kby:L (2.5) BS03 BCL ? GO:0009772 ... P0C0Y8 16228547
    160 1kby:M (2.5) BS01 BCL ? GO:0009772 ... P0C0Y9 16228547
    161 1kby:M (2.5) BS02 BCL ? GO:0009772 ... P0C0Y9 16228547
    162 1kzu:A (2.5) BS01 BCL ? GO:0005886 ... P26789 9159480
    163 1kzu:A (2.5) BS02 BCL ? GO:0005886 ... P26789 9159480
    164 1kzu:A (2.5) BS03 BCL ? GO:0005886 ... P26789 9159480
    165 1kzu:B (2.5) BS01 BCL ? GO:0005886 ... P26790 9159480
    166 1kzu:B (2.5) BS02 BCL ? GO:0005886 ... P26790 9159480
    167 1kzu:B (2.5) BS03 BCL ? GO:0005886 ... P26790 9159480
    168 1kzu:D (2.5) BS01 BCL ? GO:0005886 ... P26789 9159480
    169 1kzu:D (2.5) BS02 BCL ? GO:0005886 ... P26789 9159480
    170 1kzu:D (2.5) BS03 BCL ? GO:0005886 ... P26789 9159480
    171 1kzu:D (2.5) BS04 BCL ? GO:0005886 ... P26789 9159480
    172 1kzu:E (2.5) BS01 BCL ? GO:0005886 ... P26790 9159480
    173 1kzu:E (2.5) BS02 BCL ? GO:0005886 ... P26790 9159480
    174 1kzu:E (2.5) BS03 BCL ? GO:0005886 ... P26790 9159480
    175 1kzu:G (2.5) BS01 BCL ? GO:0005886 ... P26789 9159480
    176 1kzu:G (2.5) BS02 BCL ? GO:0005886 ... P26789 9159480
    177 1kzu:G (2.5) BS03 BCL ? GO:0005886 ... P26789 9159480
    178 1kzu:G (2.5) BS04 BCL ? GO:0005886 ... P26789 9159480
    179 1kzu:H (2.5) BS01 BCL ? GO:0005886 ... P26790 9159480
    180 1kzu:H (2.5) BS02 BCL ? GO:0005886 ... P26790 9159480
    181 1kzu:H (2.5) BS03 BCL ? GO:0005886 ... P26790 9159480
    182 1l9b:L (2.4) BS01 BCL ? GO:0009772 ... P0C0Y8 12051924
    183 1l9b:L (2.4) BS02 BCL ? GO:0009772 ... P0C0Y8 12051924
    184 1l9b:L (2.4) BS05 BCL ? GO:0009772 ... P0C0Y8 12051924
    185 1l9b:M (2.4) BS01 BCL ? GO:0009772 ... P0C0Y9 12051924
    186 1l9b:M (2.4) BS04 BCL ? GO:0009772 ... P0C0Y9 12051924
    187 1l9b:M (2.4) BS05 BCL ? GO:0009772 ... P0C0Y9 12051924
    188 1l9j:L (3.25) BS01 BCL ? GO:0009772 ... P0C0Y8 12051924
    189 1l9j:L (3.25) BS02 BCL ? GO:0009772 ... P0C0Y8 12051924
    190 1l9j:L (3.25) BS05 BCL ? GO:0009772 ... P0C0Y8 12051924
    191 1l9j:M (3.25) BS01 BCL ? GO:0009772 ... P0C0Y9 12051924
    192 1l9j:M (3.25) BS04 BCL ? GO:0009772 ... P0C0Y9 12051924
    193 1l9j:M (3.25) BS05 BCL ? GO:0009772 ... P0C0Y9 12051924
    194 1l9j:R (3.25) BS01 BCL ? GO:0009772 ... P0C0Y8 12051924
    195 1l9j:R (3.25) BS02 BCL ? GO:0009772 ... P0C0Y8 12051924
    196 1l9j:R (3.25) BS05 BCL ? GO:0009772 ... P0C0Y8 12051924
    197 1l9j:S (3.25) BS01 BCL ? GO:0009772 ... P0C0Y9 12051924
    198 1l9j:S (3.25) BS04 BCL ? GO:0009772 ... P0C0Y9 12051924
    199 1l9j:S (3.25) BS05 BCL ? GO:0009772 ... P0C0Y9 12051924
    200 1lgh:A (2.4) BS01 BCL ? GO:0005886 ... P97253 8736556
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218