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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1n2j:B (1.8) BS02 BAL 6.3.2.1 GO:0000287 ... P9WIL5 12717031
    2 1n2o:B (2.1) BS01 BAL 6.3.2.1 GO:0000287 ... P9WIL5 12717031
    3 1rgr:A (-1.00) BS02 BAL ? N/A P31016 15123241
    4 2a86:A (1.85) BS02 BAL 6.3.2.1 GO:0000287 ... P9WIL5 16460002
    5 2v8g:A (2.5) BS03 BAL 3.5.1.6 GO:0003837 ... Q96W94 17916556
    6 2v8g:B (2.5) BS01 BAL 3.5.1.6 GO:0003837 ... Q96W94 17916556
    7 2v8g:C (2.5) BS03 BAL 3.5.1.6 GO:0003837 ... Q96W94 17916556
    8 2v8g:D (2.5) BS03 BAL 3.5.1.6 GO:0003837 ... Q96W94 17916556
    9 3qtt:A (2.599) BS04 BAL 6.3.2.1 GO:0003824 ... Q5NF57 N/A
    10 3qtt:B (2.599) BS03 BAL 6.3.2.1 GO:0003824 ... Q5NF57 N/A
    11 4aqd:A (2.5) BS03 BAL 3.1.1.8 GO:0004104 ... P06276 22726956
    12 4aqd:B (2.5) BS02 BAL 3.1.1.8 GO:0004104 ... P06276 22726956
    13 4xn9:A (2.8) BS02 BAL 3.4.11.2 GO:0004177 ... P04825 N/A
    14 6l8a:C (1.95005) BS01 BAL 3.12.1.- GO:0005886 ... B7J3C9 33103311
    15 6l8a:E (1.95005) BS01 BAL 3.12.1.- GO:0005886 ... B7J3C9 33103311
    16 6l8a:E (1.95005) BS02 BAL 3.12.1.- GO:0005886 ... B7J3C9 33103311
    17 7y12:R (3.1) BS01 BAL ? GO:0004930 ... P0ABE7
    Q8TDS7    		 35840655
    18 7y14:R (3.2) BS01 BAL ? GO:0004930 ... P0ABE7
    Q8TDS7    		 35840655
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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