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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 400 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 5cjw:B (3.4) BS01 B12 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 26318610
    202 5d08:A (1.747) BS03 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    203 5d08:B (1.747) BS03 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    204 5d0a:A (2.1) BS05 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    205 5d0a:B (2.1) BS04 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    206 5d0a:C (2.1) BS03 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    207 5d0a:D (2.1) BS03 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    208 5d0b:A (2.645) BS04 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    209 5d0b:B (2.645) BS03 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    210 5d6s:A (2.65) BS03 B12 ? GO:0005737 ... A0A0R4I997 26378237
    211 5d6s:B (2.65) BS03 B12 ? GO:0005737 ... A0A0R4I997 26378237
    212 5d6s:C (2.65) BS03 B12 ? GO:0005737 ... A0A0R4I997 26378237
    213 5d6s:D (2.65) BS03 B12 ? GO:0005737 ... A0A0R4I997 26378237
    214 5d6s:E (2.65) BS03 B12 ? GO:0005737 ... A0A0R4I997 26378237
    215 5laa:A (3.0) BS01 B12 2.1.1.86 GO:0005886 ... E3GWY7 27324530
    216 5laa:B (3.0) BS01 B12 2.1.1.86 GO:0005886 ... E3GWY7 27324530
    217 5laa:C (3.0) BS01 B12 2.1.1.86 GO:0005886 ... E3GWY7 27324530
    218 5nsa:A (1.273) BS01 B12 ? N/A P20062 28910388
    219 5req:A (2.2) BS03 B12 5.4.99.2 GO:0003824 ... P11653 9772164
    220 5req:C (2.2) BS03 B12 5.4.99.2 GO:0003824 ... P11653 9772164
    221 5t8y:A (2.653) BS03 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    222 5t8y:B (2.653) BS04 B12 1.17.99.6 GO:0005737 ... P97030 27638883
    223 5ul3:A (1.8) BS02 B12 ? GO:0003824 ... O24770 28346939
    224 5ul4:A (1.85) BS02 B12 ? GO:0003824 ... O24770 28346939
    225 5uos:A (2.51) BS01 B12 1.16.1.6
    2.5.1.151    		 N/A Q9Y4U1 28544088
    226 5yrt:A (1.7) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 29797764
    227 5yrt:B (1.7) BS01 B12 4.2.1.28 N/A Q59471 29797764
    228 5yrt:D (1.7) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 29797764
    229 5yrt:E (1.7) BS01 B12 4.2.1.28 N/A Q59471 29797764
    230 5yrt:G (1.7) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 29797764
    231 5yrt:H (1.7) BS01 B12 4.2.1.28 N/A Q59471 29797764
    232 5yrt:J (1.7) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 29797764
    233 5yrt:K (1.7) BS01 B12 4.2.1.28 N/A Q59471 29797764
    234 5yrv:A (1.55) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 29797764
    235 5yrv:B (1.55) BS01 B12 4.2.1.28 N/A Q59471 29797764
    236 5yrv:D (1.55) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 29797764
    237 5yrv:E (1.55) BS01 B12 4.2.1.28 N/A Q59471 29797764
    238 5yrv:G (1.55) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 29797764
    239 5yrv:H (1.55) BS01 B12 4.2.1.28 N/A Q59471 29797764
    240 5yrv:J (1.55) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 29797764
    241 5yrv:K (1.55) BS01 B12 4.2.1.28 N/A Q59471 29797764
    242 5ysh:A (1.9) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 29797764
    243 5ysh:B (1.9) BS01 B12 4.2.1.28 N/A Q59471 29797764
    244 5ysh:D (1.9) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 29797764
    245 5ysh:E (1.9) BS01 B12 4.2.1.28 N/A Q59471 29797764
    246 5ysh:G (1.9) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 29797764
    247 5ysh:H (1.9) BS01 B12 4.2.1.28 N/A Q59471 29797764
    248 5ysh:J (1.9) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 29797764
    249 5ysh:K (1.9) BS01 B12 4.2.1.28 N/A Q59471 29797764
    250 5ysn:A (2.001) BS01 B12 4.3.1.7 GO:0005829 ... P0AEJ6 29797764
    251 5ysn:B (2.001) BS01 B12 4.3.1.7 GO:0006520 ... P19636 29797764
    252 5ysn:C (2.001) BS01 B12 4.3.1.7 GO:0005829 ... P0AEJ6 29797764
    253 5ysn:D (2.001) BS01 B12 4.3.1.7 GO:0006520 ... P19636 29797764
    254 5ysr:A (2.05) BS01 B12 4.3.1.7 GO:0005829 ... P0AEJ6 29797764
    255 5ysr:B (2.05) BS01 B12 4.3.1.7 GO:0006520 ... P19636 29797764
    256 5ysr:C (2.05) BS01 B12 4.3.1.7 GO:0005829 ... P0AEJ6 29797764
    257 5ysr:D (2.05) BS01 B12 4.3.1.7 GO:0006520 ... P19636 29797764
    258 6d5k:A (2.85) BS01 B12 2.5.1.- N/A Q96EY8 30282455
    259 6d5k:A (2.85) BS02 B12 2.5.1.- N/A Q96EY8 30282455
    260 6d5k:B (2.85) BS01 B12 2.5.1.- N/A Q96EY8 30282455
    261 6d5k:C (2.85) BS01 B12 2.5.1.- N/A Q96EY8 30282455
    262 6d5x:A (2.4) BS01 B12 2.5.1.- N/A Q96EY8 30282455
    263 6d5x:A (2.4) BS03 B12 2.5.1.- N/A Q96EY8 30282455
    264 6d5x:B (2.4) BS01 B12 2.5.1.- N/A Q96EY8 30282455
    265 6d5x:C (2.4) BS01 B12 2.5.1.- N/A Q96EY8 30282455
    266 6ffv:A () BS01 B12 N/A N/A N/A N/A
    267 6h9e:A (1.82) BS01 B12 5.4.99.1 GO:0005515 ... P80078 35793207
    268 6h9e:B (1.82) BS01 B12 5.4.99.1 GO:0003824 ... P80077 35793207
    269 6h9e:C (1.82) BS01 B12 5.4.99.1 GO:0005515 ... P80078 35793207
    270 6h9e:D (1.82) BS01 B12 5.4.99.1 GO:0003824 ... P80077 35793207
    271 6h9f:A (2.1) BS01 B12 5.4.99.1 GO:0005515 ... P80078 35793207
    272 6h9f:B (2.1) BS01 B12 5.4.99.1 GO:0003824 ... P80077 35793207
    273 6h9f:C (2.1) BS01 B12 5.4.99.1 GO:0005515 ... P80078 35793207
    274 6h9f:D (2.1) BS01 B12 5.4.99.1 GO:0003824 ... P80077 35793207
    275 6oxc:A (1.9) BS01 B12 5.4.99.2 GO:0003824 ... P9WJK5 31672889
    276 6oxd:A (2.0) BS01 B12 5.4.99.2 GO:0003824 ... P9WJK5 31672889
    277 6req:A (2.2) BS02 B12 5.4.99.2 GO:0003824 ... P11653 10387043
    278 6req:C (2.2) BS02 B12 5.4.99.2 GO:0003824 ... P11653 10387043
    279 6wgs:A (1.5) BS01 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    280 6wgv:A (2.151) BS01 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    281 6wh5:A (1.866) BS02 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    282 6wh5:A (1.866) BS04 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    283 6wh5:B (1.866) BS02 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    284 6wh5:B (1.866) BS04 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    285 6wh5:C (1.866) BS03 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    286 6wh5:C (1.866) BS04 B12 2.5.1.17 GO:0005524 ... P9WP99 33199623
    287 6wte:A (1.67) BS02 B12 ? GO:0003824 ... E4N8S5 33462497
    288 6wte:B (1.67) BS02 B12 ? GO:0003824 ... E4N8S5 33462497
    289 6wtf:A (2.19) BS02 B12 ? GO:0003824 ... E4N8S5 33462497
    290 6wtf:B (2.19) BS02 B12 ? GO:0003824 ... E4N8S5 33462497
    291 6x8z:A (2.5) BS01 B12 1.-.-.- GO:0009235 ... Q9H3L0 32871076
    292 6x8z:B (2.5) BS01 B12 1.-.-.- GO:0009235 ... Q9H3L0 32871076
    293 6zxu:A (1.73) BS03 B12 ? GO:0046872 ... K2MB66 32887524
    294 6zxu:B (1.73) BS03 B12 ? GO:0046872 ... K2MB66 32887524
    295 6zxu:C (1.73) BS03 B12 ? GO:0046872 ... K2MB66 32887524
    296 6zxx:A (1.99) BS03 B12 ? GO:0046872 ... K2MB66 32887524
    297 6zxx:B (1.99) BS03 B12 ? GO:0046872 ... K2MB66 32887524
    298 6zxx:C (1.99) BS03 B12 ? GO:0046872 ... K2MB66 32887524
    299 6zy0:A (2.13) BS03 B12 ? GO:0046872 ... K2MB66 32887524
    300 6zy0:B (2.13) BS03 B12 ? GO:0046872 ... K2MB66 32887524
    301 6zy0:C (2.13) BS03 B12 ? GO:0046872 ... K2MB66 32887524
    302 6zy1:A (1.99) BS03 B12 ? GO:0046872 ... K2MB66 32887524
    303 6zy1:B (1.99) BS03 B12 ? GO:0046872 ... K2MB66 32887524
    304 6zy1:C (1.99) BS03 B12 ? GO:0046872 ... K2MB66 32887524
    305 7kdx:A (1.791) BS02 B12 ? GO:0003824 ... A0A6B9HEI0 35110734
    306 7kdx:B (1.791) BS01 B12 ? GO:0003824 ... A0A6B9HEI0 35110734
    307 7kdy:A (1.939) BS02 B12 ? GO:0003824 ... A0A6B9HEI0 35110734
    308 7kdy:B (1.939) BS02 B12 ? GO:0003824 ... A0A6B9HEI0 35110734
    309 7req:A (2.2) BS02 B12 5.4.99.2 GO:0003824 ... P11653 10387043
    310 7req:C (2.2) BS02 B12 5.4.99.2 GO:0003824 ... P11653 10387043
    311 7ruu:A (1.85) BS01 B12 2.5.1.- N/A Q96EY8 34757128
    312 7ruu:A (1.85) BS02 B12 2.5.1.- N/A Q96EY8 34757128
    313 7ruu:B (1.85) BS01 B12 2.5.1.- N/A Q96EY8 34757128
    314 7ruu:C (1.85) BS01 B12 2.5.1.- N/A Q96EY8 34757128
    315 7ruu:C (1.85) BS02 B12 2.5.1.- N/A Q96EY8 34757128
    316 7ruu:D (1.85) BS01 B12 2.5.1.- N/A Q96EY8 34757128
    317 7ruu:D (1.85) BS02 B12 2.5.1.- N/A Q96EY8 34757128
    318 7ruv:A (2.1) BS01 B12 2.5.1.- N/A Q96EY8 34757128
    319 7ruv:A (2.1) BS02 B12 2.5.1.- N/A Q96EY8 34757128
    320 7ruv:B (2.1) BS01 B12 2.5.1.- N/A Q96EY8 34757128
    321 7ruv:B (2.1) BS02 B12 2.5.1.- N/A Q96EY8 34757128
    322 7ruv:C (2.1) BS01 B12 2.5.1.- N/A Q96EY8 34757128
    323 7ruv:D (2.1) BS01 B12 2.5.1.- N/A Q96EY8 34757128
    324 7ruv:D (2.1) BS02 B12 2.5.1.- N/A Q96EY8 34757128
    325 7te2:A (2.25) BS01 B12 ? GO:0031419 ... D5ANS8 35630357
    326 7xrk:A (2.3) BS03 B12 4.2.1.28 GO:0003824 ... Q59470 35974426
    327 7xrk:B (2.3) BS01 B12 4.2.1.28 N/A Q59471 35974426
    328 7xrk:D (2.3) BS03 B12 4.2.1.28 GO:0003824 ... Q59470 35974426
    329 7xrk:E (2.3) BS01 B12 4.2.1.28 N/A Q59471 35974426
    330 7xrl:A (1.75) BS03 B12 4.2.1.28 GO:0003824 ... Q59470 35974426
    331 7xrl:B (1.75) BS01 B12 4.2.1.28 N/A Q59471 35974426
    332 7xrl:D (1.75) BS03 B12 4.2.1.28 GO:0003824 ... Q59470 35974426
    333 7xrl:E (1.75) BS01 B12 4.2.1.28 N/A Q59471 35974426
    334 7xrm:A (2.13) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 35974426
    335 7xrm:B (2.13) BS01 B12 4.3.1.7 GO:0006520 ... P19636 35974426
    336 7xrm:C (2.13) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 35974426
    337 7xrm:D (2.13) BS01 B12 4.3.1.7 GO:0006520 ... P19636 35974426
    338 7xrn:A (2.07) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 35974426
    339 7xrn:B (2.07) BS01 B12 4.3.1.7 GO:0006520 ... P19636 35974426
    340 7xrn:C (2.07) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 35974426
    341 7xrn:D (2.07) BS01 B12 4.3.1.7 GO:0006520 ... P19636 35974426
    342 8c31:A (1.8) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    343 8c31:B (1.8) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    344 8c31:C (1.8) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    345 8c31:D (1.8) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    346 8c32:A (2.2) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    347 8c32:B (2.2) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    348 8c32:C (2.2) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    349 8c32:D (2.2) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    350 8c33:A (2.25) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    351 8c33:B (2.25) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    352 8c33:C (2.25) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    353 8c33:D (2.25) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    354 8c34:A (1.82) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    355 8c34:B (1.82) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    356 8c34:C (1.82) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    357 8c34:D (1.82) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    358 8c35:A (2.1) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    359 8c35:B (2.1) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    360 8c35:C (2.1) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    361 8c35:D (2.1) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    362 8c36:A (2.0) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    363 8c36:B (2.0) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    364 8c36:C (2.0) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    365 8c36:D (2.0) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    366 8c37:A (2.15) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    367 8c37:B (2.15) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    368 8c37:C (2.15) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    369 8c37:D (2.15) BS01 B12 ? GO:0031419 ... Q746J7 37604813
    370 8c73:A (1.7) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    371 8c73:B (1.7) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    372 8c73:C (1.7) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    373 8c73:D (1.7) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    374 8c76:A (2.5) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    375 8c76:B (2.5) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    376 8c76:C (2.5) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    377 8c76:D (2.5) BS01 B12 ? GO:0031419 ... Q53W62 37604813
    378 8c7p:A (3.0) BS01 B12 ? GO:0016020 ... Q3SFD8 38733996
    379 8dyj:B (2.2) BS01 B12 5.4.99.2 GO:0003824 ... P22033 36888659
    380 8dyl:B (1.9) BS01 B12 5.4.99.2 GO:0003824 ... P22033 36888659
    381 8g3h:A (3.6) BS01 B12 2.1.1.13 GO:0005829 ... A0A0A2XCD7 37339208
    382 8ixt:A (1.2) BS01 B12 ? GO:0005576 ... Q9R0D6 38636663
    383 8ixu:A (1.3) BS01 B12 ? GO:0005576 ... Q9R0D6 38636663
    384 8j2w:A (1.7) BS01 B12 ? GO:0031419 ... A0A5Q0H231 38548733
    385 8j2w:B (1.7) BS01 B12 ? GO:0031419 ... A0A5Q0H231 38548733
    386 8j2x:A (1.98) BS01 B12 ? GO:0031419 ... A0A5Q0H231 38548733
    387 8j2y:A (2.3) BS01 B12 ? GO:0031419 ... A0A349B205 38548733
    388 8j2y:B (2.3) BS01 B12 ? GO:0031419 ... A0A349B205 38548733
    389 8ovv:A (2.26) BS01 B12 ? GO:0016020 ... Q3SFD8 N/A
    390 8ptd:A (1.6) BS01 B12 N/A N/A Q8A7N4 N/A
    391 8sse:A (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    392 8sse:B (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    393 8sse:C (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    394 8sse:D (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    395 8sse:E (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    396 8sse:F (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    397 8t0q:A (3.06) BS01 B12 N/A N/A Q8RBT2 N/A
    398 8t0q:B (3.06) BS01 B12 N/A N/A Q8RBT2 N/A
    399 8t0v:B (3.0) BS01 B12 N/A N/A Q8RBT2 N/A
    400 8t0v:D (3.0) BS01 B12 N/A N/A Q8RBT3 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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