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BioLiP
Download all results in tab-seperated text for 400 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1dio:A (2.2) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 10467140
    2 1dio:B (2.2) BS01 B12 4.2.1.28 GO:0016829 ... Q59471 10467140
    3 1dio:E (2.2) BS01 B12 4.2.1.28 GO:0016829 ... Q59471 10467140
    4 1dio:L (2.2) BS02 B12 4.2.1.28 GO:0003824 ... Q59470 10467140
    5 1e1c:A (2.62) BS01 B12 5.4.99.2 GO:0003824 ... P11653 10924114
    6 1e1c:C (2.62) BS01 B12 5.4.99.2 GO:0003824 ... P11653 10924114
    7 1g64:A (2.1) BS02 B12 2.5.1.17 GO:0005524 ... P31570 11148030
    8 1i9c:A (1.9) BS01 B12 5.4.99.1 GO:0005515 ... P80078 11592143
    9 1i9c:B (1.9) BS01 B12 5.4.99.1 GO:0003824 ... P80077 11592143
    10 1i9c:C (1.9) BS01 B12 5.4.99.1 GO:0005515 ... P80078 11592143
    11 1i9c:D (1.9) BS01 B12 5.4.99.1 GO:0003824 ... P80077 11592143
    12 1iwb:A (1.85) BS04 B12 4.2.1.28 GO:0003824 ... Q59470 12379103
    13 1iwb:B (1.85) BS01 B12 4.2.1.28 GO:0016829 ... Q59471 12379103
    14 1iwb:E (1.85) BS01 B12 4.2.1.28 GO:0016829 ... Q59471 12379103
    15 1iwb:L (1.85) BS04 B12 4.2.1.28 GO:0003824 ... Q59470 12379103
    16 1iwp:A (2.1) BS01 B12 4.2.1.30 GO:0003824 ... Q59476 12230560
    17 1iwp:B (2.1) BS01 B12 4.2.1.28
    4.2.1.30    		 GO:0016829 ... O08505 12230560
    18 1iwp:E (2.1) BS01 B12 4.2.1.28
    4.2.1.30    		 GO:0016829 ... O08505 12230560
    19 1iwp:L (2.1) BS01 B12 4.2.1.30 GO:0003824 ... Q59476 12230560
    20 1k7y:A (3.0) BS01 B12 2.1.1.13 GO:0008705 ... P13009 11731805
    21 1k98:A (3.75) BS01 B12 2.1.1.13 GO:0008705 ... P13009 11731805
    22 1mmf:A (2.5) BS01 B12 4.2.1.30 GO:0003824 ... Q59476 12538056
    23 1mmf:B (2.5) BS01 B12 4.2.1.28
    4.2.1.30    		 GO:0016829 ... O08505 12538056
    24 1mmf:E (2.5) BS01 B12 4.2.1.28
    4.2.1.30    		 GO:0016829 ... O08505 12538056
    25 1mmf:L (2.5) BS01 B12 4.2.1.30 GO:0003824 ... Q59476 12538056
    26 1req:A (2.0) BS01 B12 5.4.99.2 GO:0003824 ... P11653 8805541
    27 1req:C (2.0) BS01 B12 5.4.99.2 GO:0003824 ... P11653 8805541
    28 1xrs:B (2.8) BS01 B12 5.4.3.3 GO:0016853 ... E3PRJ4 15514022
    29 2bb5:A (3.2) BS01 B12 ? GO:0005515 ... P20062 16537422
    30 2bb5:B (3.2) BS01 B12 ? GO:0005515 ... P20062 16537422
    31 2bb6:A (2.0) BS01 B12 ? GO:0005576 ... Q9XSC9 16537422
    32 2bb6:B (2.0) BS01 B12 ? GO:0005576 ... Q9XSC9 16537422
    33 2bb6:C (2.0) BS01 B12 ? GO:0005576 ... Q9XSC9 16537422
    34 2bb6:D (2.0) BS01 B12 ? GO:0005576 ... Q9XSC9 16537422
    35 2bbc:A (2.4) BS01 B12 ? GO:0005576 ... Q9XSC9 16537422
    36 2h9a:A (1.9) BS01 B12 ? GO:0005506 ... Q3ACS3 16983091
    37 2h9a:B (1.9) BS01 B12 ? GO:0044237 ... Q3ACS0 16983091
    38 2pmv:A (2.6) BS01 B12 ? GO:0005515 ... P27352 17954916
    39 2pmv:C (2.6) BS01 B12 ? GO:0005515 ... P27352 17954916
    40 2req:A (2.5) BS02 B12 5.4.99.2 GO:0003824 ... P11653 9655823
    41 2req:C (2.5) BS02 B12 5.4.99.2 GO:0003824 ... P11653 9655823
    42 2v3n:A (2.73) BS01 B12 ? GO:0005576 ... Q9XSC9 17943552
    43 2v3p:A (2.9) BS01 B12 ? GO:0005576 ... Q9XSC9 17943552
    44 2xij:A (1.95) BS01 B12 5.4.99.2 GO:0003824 ... P22033 20876572
    45 2xiq:A (1.95) BS01 B12 5.4.99.2 GO:0003824 ... P22033 20876572
    46 2xiq:B (1.95) BS01 B12 5.4.99.2 GO:0003824 ... P22033 20876572
    47 2ycl:A (1.95) BS01 B12 ? GO:0005506 ... Q3ACS3 21640123
    48 2ycl:B (1.95) BS01 B12 ? GO:0044237 ... Q3ACS0 21640123
    49 3abo:A (2.1) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 20519496
    50 3abo:B (2.1) BS01 B12 4.3.1.7 GO:0006520 ... P19636 20519496
    51 3abo:C (2.1) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 20519496
    52 3abo:D (2.1) BS01 B12 4.3.1.7 GO:0006520 ... P19636 20519496
    53 3abq:A (2.05) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 20519496
    54 3abq:B (2.05) BS01 B12 4.3.1.7 GO:0006520 ... P19636 20519496
    55 3abq:C (2.05) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 20519496
    56 3abq:D (2.05) BS01 B12 4.3.1.7 GO:0006520 ... P19636 20519496
    57 3abr:A (2.1) BS01 B12 4.3.1.7 GO:0005829 ... P0AEJ6 20519496
    58 3abr:B (2.1) BS01 B12 4.3.1.7 GO:0006520 ... P19636 20519496
    59 3abr:C (2.1) BS01 B12 4.3.1.7 GO:0005829 ... P0AEJ6 20519496
    60 3abr:D (2.1) BS01 B12 4.3.1.7 GO:0006520 ... P19636 20519496
    61 3any:A (2.1) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 21142024
    62 3any:B (2.1) BS01 B12 4.3.1.7 GO:0006520 ... P19636 21142024
    63 3any:C (2.1) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 21142024
    64 3any:D (2.1) BS01 B12 4.3.1.7 GO:0006520 ... P19636 21142024
    65 3ao0:A (2.25) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 21142024
    66 3ao0:B (2.25) BS01 B12 4.3.1.7 GO:0006520 ... P19636 21142024
    67 3ao0:C (2.25) BS02 B12 4.3.1.7 GO:0005829 ... P0AEJ6 21142024
    68 3ao0:D (2.25) BS01 B12 4.3.1.7 GO:0006520 ... P19636 21142024
    69 3auj:A (2.1) BS03 B12 4.2.1.28 GO:0003824 ... Q59470 22221669 Manual survey: Km=1.2+-0.2mM (22221669)
    70 3auj:B (2.1) BS01 B12 4.2.1.28 GO:0016829 ... Q59471 22221669
    71 3auj:E (2.1) BS01 B12 4.2.1.28 GO:0016829 ... Q59471 22221669
    72 3auj:L (2.1) BS03 B12 4.2.1.28 GO:0003824 ... Q59470 22221669 Manual survey: Km=1.2+-0.2mM (22221669)
    73 3bul:A (2.3) BS01 B12 2.1.1.13 GO:0008705 ... P13009 18332423
    74 3ci1:A (1.9) BS01 B12 2.5.1.17 GO:0005515 ... Q50EJ2 18452306
    75 3ci3:A (1.11) BS02 B12 2.5.1.17 GO:0005515 ... Q50EJ2 18452306
    76 3gah:A (1.17) BS02 B12 2.5.1.17 GO:0005515 ... Q50EJ2 19236001
    77 3gai:A (1.48) BS02 B12 2.5.1.17 GO:0005515 ... Q50EJ2 19236001
    78 3gaj:A (1.38) BS02 B12 2.5.1.17 GO:0005515 ... Q50EJ2 19236001
    79 3iv9:A (3.25) BS01 B12 2.1.1.13 GO:0008705 ... P13009 19846791
    80 3iva:A (2.7) BS01 B12 2.1.1.13 GO:0008705 ... P13009 19846791
    81 3kow:A (2.9) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    82 3kow:A (2.9) BS03 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    83 3kow:B (2.9) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    84 3kow:C (2.9) BS02 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    85 3kow:D (2.9) BS02 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    86 3kow:D (2.9) BS03 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    87 3kox:A (2.4) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    88 3kox:A (2.4) BS03 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    89 3kox:B (2.4) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    90 3kox:C (2.4) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    91 3kox:D (2.4) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    92 3koy:A (2.8) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    93 3koy:A (2.8) BS03 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    94 3koy:B (2.8) BS02 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    95 3koy:C (2.8) BS02 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    96 3koy:D (2.8) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    97 3koy:D (2.8) BS02 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    98 3koz:A (2.8) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    99 3koz:A (2.8) BS03 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    100 3koz:B (2.8) BS02 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    101 3koz:B (2.8) BS03 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    102 3koz:C (2.8) BS02 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    103 3koz:D (2.8) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    104 3kp0:B (2.8) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    105 3kp0:C (2.8) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    106 3kp1:A (2.01) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    107 3kp1:B (2.01) BS01 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    108 3kp1:B (2.01) BS03 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    109 3kp1:C (2.01) BS02 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    110 3kp1:D (2.01) BS02 B12 5.4.3.5 GO:0003824 ... E3PY95 20106986
    111 3kq4:A (3.3) BS01 B12 ? GO:0005515 ... P27352 20237569
    112 3kq4:C (3.3) BS01 B12 ? GO:0005515 ... P27352 20237569
    113 3kq4:E (3.3) BS01 B12 ? GO:0005515 ... P27352 20237569
    114 3o0n:B (1.95) BS03 B12 1.17.4.1 GO:0000166 ... O33839 20672854
    115 3o0o:A (1.9) BS03 B12 1.17.4.1 GO:0000166 ... O33839 20672854
    116 3o0o:B (1.9) BS04 B12 1.17.4.1 GO:0000166 ... O33839 20672854
    117 3req:A (2.7) BS01 B12 5.4.99.2 GO:0003824 ... P11653 9655823
    118 3som:A (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    119 3som:B (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    120 3som:C (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    121 3som:D (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    122 3som:E (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    123 3som:F (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    124 3som:G (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    125 3som:H (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    126 3som:I (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    127 3som:J (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    128 3som:K (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    129 3som:L (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    130 3som:M (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    131 3som:N (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    132 3som:O (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    133 3som:P (2.4) BS01 B12 1.16.1.6
    2.5.1.151    		 GO:0005515 ... Q9Y4U1 22642810
    134 3whp:A (2.52) BS01 B12 ? GO:0003677 ... Q746J7 N/A
    135 4c1n:A (2.53) BS02 B12 ? GO:0005506 ... Q3ACS3 25109607
    136 4c1n:C (2.53) BS01 B12 ? GO:0005506 ... Q3ACS3 25109607
    137 4c1n:E (2.53) BS02 B12 ? GO:0005506 ... Q3ACS3 25109607
    138 4c1n:G (2.53) BS02 B12 ? GO:0005506 ... Q3ACS3 25109607
    139 4c1n:I (2.53) BS01 B12 ? N/A Q3ACS2 25109607
    140 4c1n:J (2.53) BS01 B12 ? N/A Q3ACS2 25109607
    141 4c1n:K (2.53) BS01 B12 ? N/A Q3ACS2 25109607
    142 4c1n:X (2.53) BS01 B12 ? N/A Q3ACS2 25109607
    143 4djd:C (2.38) BS02 B12 ? GO:0005506 ... Q07340 22419154
    144 4djd:D (2.38) BS01 B12 ? GO:0005515 ... Q07341 22419154
    145 4djd:E (2.38) BS02 B12 ? GO:0005506 ... Q07340 22419154
    146 4djd:F (2.38) BS01 B12 ? GO:0005515 ... Q07341 22419154
    147 4dje:A (3.504) BS03 B12 2.1.1.258 GO:0005509 ... Q46389 22419154
    148 4dje:B (3.504) BS02 B12 2.1.1.258 GO:0005509 ... Q46389 22419154
    149 4dje:C (3.504) BS02 B12 ? GO:0005506 ... Q07340 22419154
    150 4dje:E (3.504) BS02 B12 ? GO:0005506 ... Q07340 22419154
    151 4hut:A (1.95) BS03 B12 2.5.1.17 GO:0005524 ... P31570 23148601
    152 4hut:B (1.95) BS03 B12 2.5.1.17 GO:0005524 ... P31570 23148601
    153 4lem:A (2.27) BS01 B12 1.2.1.88 GO:0000166 ... O50443 25557497
    154 4lem:B (2.27) BS01 B12 1.2.1.88 GO:0000166 ... O50443 25557497
    155 4lem:C (2.27) BS01 B12 1.2.1.88 GO:0000166 ... O50443 25557497
    156 4lem:D (2.27) BS01 B12 1.2.1.88 GO:0000166 ... O50443 25557497
    157 4ns3:A (2.38) BS01 B12 1.2.1.88 GO:0000166 ... O50443 25557497
    158 4ns3:B (2.38) BS01 B12 1.2.1.88 GO:0000166 ... O50443 25557497
    159 4ns3:C (2.38) BS01 B12 1.2.1.88 GO:0000166 ... O50443 25557497
    160 4ns3:D (2.38) BS01 B12 1.2.1.88 GO:0000166 ... O50443 25557497
    161 4r3u:A (2.5) BS03 B12 5.4.99.64 GO:0003824 ... I3VE77 25720495
    162 4r3u:B (2.5) BS03 B12 5.4.99.64 GO:0003824 ... I3VE77 25720495
    163 4r3u:C (2.5) BS01 B12 5.4.99.64 GO:0016853 ... I3VE74 25720495
    164 4r3u:D (2.5) BS01 B12 5.4.99.64 GO:0016853 ... I3VE74 25720495
    165 4ras:A (2.3) BS03 B12 ? GO:0046872 ... K2MB66 25327251
    166 4ras:B (2.3) BS03 B12 ? GO:0046872 ... K2MB66 25327251
    167 4ras:C (2.3) BS03 B12 ? GO:0046872 ... K2MB66 25327251
    168 4req:A (2.2) BS01 B12 5.4.99.2 GO:0003824 ... P11653 9655823
    169 4req:C (2.2) BS01 B12 5.4.99.2 GO:0003824 ... P11653 9655823
    170 4u6i:C (2.1) BS01 B12 ? GO:0005198 ... Q8XLZ0 25484204
    171 4xc6:A (3.35) BS01 B12 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 25675500
    172 4xc6:B (3.35) BS01 B12 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 25675500
    173 5c8a:A (2.15) BS01 B12 ? GO:0031419 ... Q746J7 26416754
    174 5c8a:B (2.15) BS01 B12 ? GO:0031419 ... Q746J7 26416754
    175 5c8a:C (2.15) BS01 B12 ? GO:0031419 ... Q746J7 26416754
    176 5c8a:D (2.15) BS01 B12 ? GO:0031419 ... Q746J7 26416754
    177 5c8d:A (2.8) BS01 B12 ? GO:0003677 ... Q746J7 26416754
    178 5c8d:B (2.8) BS01 B12 ? GO:0003677 ... Q746J7 26416754
    179 5c8d:C (2.8) BS01 B12 ? GO:0003677 ... Q746J7 26416754
    180 5c8d:D (2.8) BS01 B12 ? GO:0003677 ... Q746J7 26416754
    181 5c8d:E (2.8) BS01 B12 ? GO:0003677 ... Q746J7 26416754
    182 5c8d:F (2.8) BS01 B12 ? GO:0003677 ... Q746J7 26416754
    183 5c8d:G (2.8) BS01 B12 ? GO:0003677 ... Q746J7 26416754
    184 5c8d:H (2.8) BS01 B12 ? GO:0003677 ... Q746J7 26416754
    185 5c8e:A (3.89) BS04 B12 ? GO:0003677 ... Q746J7 26416754
    186 5c8e:B (3.89) BS03 B12 ? GO:0003677 ... Q746J7 26416754
    187 5c8e:C (3.89) BS03 B12 ? GO:0003677 ... Q746J7 26416754
    188 5c8e:D (3.89) BS01 B12 ? GO:0003677 ... Q746J7 26416754
    189 5c8e:E (3.89) BS03 B12 ? GO:0003677 ... Q746J7 26416754
    190 5c8e:F (3.89) BS02 B12 ? GO:0003677 ... Q746J7 26416754
    191 5c8e:G (3.89) BS03 B12 ? GO:0003677 ... Q746J7 26416754
    192 5c8e:H (3.89) BS01 B12 ? GO:0003677 ... Q746J7 26416754
    193 5c8f:A (2.65) BS01 B12 ? GO:0003677 ... Q746J7 26416754
    194 5cjt:A (3.4) BS01 B12 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 26318610
    195 5cjt:B (3.4) BS01 B12 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 26318610
    196 5cju:A (3.5) BS01 B12 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 26318610
    197 5cju:B (3.5) BS01 B12 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 26318610
    198 5cjv:A (3.45) BS01 B12 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 26318610
    199 5cjv:B (3.45) BS01 B12 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 26318610
    200 5cjw:A (3.4) BS01 B12 3.6.5.-
    5.4.99.13    		 GO:0000287 ... Q1LRY0 26318610
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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