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BioLiP
Download all results in tab-seperated text for 441 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    401 7nox:B (1.43) BS07 AZI N/A GO:0019865 ... N/A 34817219
    402 7nox:B (1.43) BS08 AZI N/A GO:0019865 ... N/A 34817219
    403 7nox:B (1.43) BS09 AZI N/A GO:0019865 ... N/A 34817219
    404 7qhm:D (2.8) BS06 AZI 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    405 7qhm:Q (2.8) BS05 AZI 7.1.1.9 GO:0004129 ... Q79VD7 35087070
    406 7rnz:A (1.3) BS03 AZI 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 34958217
    407 7thn:B (1.6) BS01 AZI 6.2.1.53 GO:0005524 ... Q5W263 36173802
    408 7thn:B (1.6) BS02 AZI 6.2.1.53 GO:0005524 ... Q5W263 36173802
    409 7thn:B (1.6) BS03 AZI 6.2.1.53 GO:0005524 ... Q5W263 36173802
    410 7thn:B (1.6) BS04 AZI 6.2.1.53 GO:0005524 ... Q5W263 36173802
    411 7thn:B (1.6) BS05 AZI 6.2.1.53 GO:0005524 ... Q5W263 36173802
    412 7thn:E (1.6) BS01 AZI ? GO:0017000 ... Q5W265 36173802
    413 7thn:E (1.6) BS02 AZI ? GO:0017000 ... Q5W265 36173802
    414 7thn:E (1.6) BS03 AZI ? GO:0017000 ... Q5W265 36173802
    415 7thq:B (2.46) BS01 AZI 6.2.1.53 GO:0005524 ... Q4KCY5 36173802
    416 7w6w:B (1.94) BS01 AZI 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    417 7w6w:D (1.94) BS01 AZI 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    418 7wnl:D (1.51) BS02 AZI 1.15.1.1 GO:0004784 ... A0A1E5TT85 36701098
    419 7ya3:A (3.0) BS02 AZI 1.17.1.9 GO:0000166 ... J2HCX1 N/A
    420 7ya3:B (3.0) BS02 AZI 1.17.1.9 GO:0000166 ... J2HCX1 N/A
    421 7ya4:A (1.8) BS02 AZI 1.17.1.9 GO:0000166 ... J2HCX1 N/A
    422 7ya4:B (1.8) BS02 AZI 1.17.1.9 GO:0000166 ... J2HCX1 N/A
    423 8bxx:AA (1.97) BS02 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    424 8bxx:BB (1.97) BS02 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    425 8bxx:CC (1.97) BS02 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    426 8bxx:DD (1.97) BS02 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    427 8egk:B (1.98) BS01 AZI ? N/A Q8YNT0 37100288
    428 8gvm:A (1.851) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    429 8gvm:A (1.851) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    430 8gvm:N (1.851) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    431 8gvm:N (1.851) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    432 8ojt:H (1.55) BS01 AZI N/A N/A N/A 37267832
    433 8ojt:L (1.55) BS01 AZI N/A N/A N/A 37267832
    434 8oq2:B (1.91) BS02 AZI 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    435 8oq2:B (1.91) BS03 AZI 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    436 8oq2:B (1.91) BS04 AZI 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    437 8oq2:C (1.91) BS02 AZI 1.17.1.9 GO:0000166 ... D7A8L2 N/A
    438 8p1h:A (1.95) BS01 AZI ? N/A P36544
    P63104    		 37804592
    439 8pzk:A (1.8) BS02 AZI ? GO:0009579 ... K9XH36 37939760
    440 8pzk:A (1.8) BS03 AZI ? GO:0009579 ... K9XH36 37939760
    441 8pzk:A (1.8) BS04 AZI ? GO:0009579 ... K9XH36 37939760
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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