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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 441 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 3mih:A (2.74) BS03 AZI 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 20958070
    202 3mih:A (2.74) BS04 AZI 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 20958070
    203 3moo:A (1.71) BS02 AZI 1.14.14.18 GO:0004392 ... Q54AI1 20806922
    204 3moo:B (1.71) BS02 AZI 1.14.14.18 GO:0004392 ... Q54AI1 20806922
    205 3n7u:A (2.0) BS02 AZI 1.17.1.9 GO:0005739 ... Q9S7E4 N/A
    206 3n7u:B (2.0) BS02 AZI 1.17.1.9 GO:0005739 ... Q9S7E4 N/A
    207 3n7u:C (2.0) BS02 AZI 1.17.1.9 GO:0005739 ... Q9S7E4 N/A
    208 3n7u:D (2.0) BS02 AZI 1.17.1.9 GO:0005739 ... Q9S7E4 N/A
    209 3n7u:E (2.0) BS02 AZI 1.17.1.9 GO:0005739 ... Q9S7E4 N/A
    210 3n7u:F (2.0) BS02 AZI 1.17.1.9 GO:0005739 ... Q9S7E4 N/A
    211 3n7u:G (2.0) BS02 AZI 1.17.1.9 GO:0005739 ... Q9S7E4 N/A
    212 3n7u:H (2.0) BS02 AZI 1.17.1.9 GO:0005739 ... Q9S7E4 N/A
    213 3n7u:I (2.0) BS02 AZI 1.17.1.9 GO:0005739 ... Q9S7E4 N/A
    214 3n7u:J (2.0) BS02 AZI 1.17.1.9 GO:0005739 ... Q9S7E4 N/A
    215 3n7u:K (2.0) BS02 AZI 1.17.1.9 GO:0005739 ... Q9S7E4 N/A
    216 3n7u:L (2.0) BS02 AZI 1.17.1.9 GO:0005739 ... Q9S7E4 N/A
    217 3p24:B (1.8) BS01 AZI 3.4.24.74 GO:0006508 ... O86049 21233422
    218 3p9f:A (1.7) BS02 AZI 1.7.3.3 GO:0004846 ... Q00511 N/A
    219 3p9f:A (1.7) BS03 AZI 1.7.3.3 GO:0004846 ... Q00511 N/A
    220 3p9o:A (1.45) BS01 AZI 1.7.3.3 GO:0004846 ... Q00511 N/A
    221 3p9o:A (1.45) BS02 AZI 1.7.3.3 GO:0004846 ... Q00511 N/A
    222 3p9o:A (1.45) BS03 AZI 1.7.3.3 GO:0004846 ... Q00511 N/A
    223 3phm:A (2.1) BS02 AZI 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 10504734
    224 3qgu:A (1.55) BS01 AZI 2.6.1.83 GO:0008483 ... A8IW39 21633707
    225 3qgu:A (1.55) BS02 AZI 2.6.1.83 GO:0008483 ... A8IW39 21633707
    226 3qm9:A (0.91) BS02 AZI ? GO:0005344 ... H3JQV6 N/A
    227 3s7w:A (1.79) BS10 AZI 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    228 3s7w:B (1.79) BS11 AZI 1.7.2.2 GO:0005509 ... L0DSL2 N/A
    229 3sid:A (1.4) BS03 AZI ? GO:0008199 ... P48329 21872605
    230 3sid:B (1.4) BS03 AZI ? GO:0008199 ... P48329 21872605
    231 3swj:A (2.409) BS02 AZI N/A N/A N/A 22020097
    232 3ucn:A (2.25) BS02 AZI 4.2.1.1 GO:0004089 ... Q96554 22162771
    233 3ucn:B (2.25) BS01 AZI 4.2.1.1 GO:0004089 ... Q96554 22162771
    234 3vvk:A (2.3) BS03 AZI ? GO:0005216 ... P15647 23442859
    235 3vvk:B (2.3) BS04 AZI ? GO:0005216 ... P15647 23442859
    236 3vvk:C (2.3) BS04 AZI ? GO:0005216 ... P15647 23442859
    237 3vvk:D (2.3) BS04 AZI ? GO:0005216 ... P15647 23442859
    238 3vvk:E (2.3) BS04 AZI ? GO:0005216 ... P15647 23442859
    239 3vvk:F (2.3) BS04 AZI ? GO:0005216 ... P15647 23442859
    240 3zjo:A (1.8) BS02 AZI ? GO:0019825 ... Q8TLY9 23776624
    241 3zjo:B (1.8) BS02 AZI ? GO:0019825 ... Q8TLY9 23776624
    242 3zjs:A (2.3) BS02 AZI ? GO:0019825 ... Q8TLY9 23776624
    243 3zjs:B (2.3) BS02 AZI ? GO:0019825 ... Q8TLY9 23776624
    244 3zwh:Q (1.94) BS01 AZI ? N/A P35579 22460785
    245 4bfg:A (2.08) BS01 AZI ? GO:0038023 ... Q9ES57 23602662
    246 4c5p:A (1.592) BS01 AZI 2.3.1.5 GO:0016407 ... B2HIZ6 N/A
    247 4c5p:A (1.592) BS02 AZI 2.3.1.5 GO:0016407 ... B2HIZ6 N/A
    248 4esj:A (2.05) BS05 AZI 3.1.21.4 GO:0004519 ... P0A460 22610857
    249 4fsk:A (1.98) BS01 AZI 1.7.3.3 GO:0004846 ... Q00511 N/A
    250 4fsk:A (1.98) BS02 AZI 1.7.3.3 GO:0004846 ... Q00511 N/A
    251 4jac:A (1.934) BS02 AZI ? GO:0004601 ... Q9NAV8 23792762
    252 4jac:B (1.934) BS02 AZI ? GO:0004601 ... Q9NAV8 23792762
    253 4jac:B (1.934) BS03 AZI ? GO:0004601 ... Q9NAV8 23792762
    254 4jij:A (1.698) BS02 AZI 3.4.24.35 GO:0004222 ... P14780 24583051
    255 4jij:B (1.698) BS02 AZI 3.4.24.35 GO:0004222 ... P14780 24583051
    256 4jqg:A (1.849) BS02 AZI 3.4.24.35 GO:0004222 ... P14780 24583051
    257 4jqg:B (1.849) BS02 AZI 3.4.24.35 GO:0004222 ... P14780 24583051
    258 4jyy:A (2.101) BS02 AZI 1.15.1.1 GO:0004784 ... Q186I6 N/A
    259 4naj:A (2.6) BS03 AZI 1.10.3.2 GO:0005507 ... D6EFA0 N/A
    260 4naj:A (2.6) BS04 AZI 1.10.3.2 GO:0005507 ... D6EFA0 N/A
    261 4nb7:A (2.55) BS03 AZI 1.10.3.2 GO:0005507 ... D6EFA0 N/A
    262 4nb7:A (2.55) BS04 AZI 1.10.3.2 GO:0005507 ... D6EFA0 N/A
    263 4nb7:A (2.55) BS05 AZI 1.10.3.2 GO:0005507 ... D6EFA0 N/A
    264 4nb7:A (2.55) BS06 AZI 1.10.3.2 GO:0005507 ... D6EFA0 N/A
    265 4oqc:A (1.3) BS01 AZI 1.7.3.3 GO:0004846 ... Q00511 25005084
    266 4otx:L (2.1) BS01 AZI N/A N/A N/A 25171003
    267 4otx:M (2.1) BS01 AZI N/A N/A N/A 25171003
    268 4pjy:A (1.501) BS02 AZI 1.13.11.20 GO:0005506 ... P21816 27477048
    269 4poe:A (1.07) BS01 AZI 1.7.3.3 GO:0004846 ... Q00511 25005084
    270 4poe:A (1.07) BS02 AZI 1.7.3.3 GO:0004846 ... Q00511 25005084
    271 4pr8:A (1.16) BS02 AZI 1.7.3.3 GO:0004846 ... Q00511 25005084
    272 4puv:A (1.3) BS01 AZI 1.7.3.3 GO:0004846 ... Q00511 25005084
    273 4qty:A (1.602) BS02 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    274 4qu0:A (1.954) BS02 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    275 4qu9:A (1.561) BS02 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    276 4qu9:A (1.561) BS03 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    277 4qu9:A (1.561) BS04 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    278 4qu9:A (1.561) BS05 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    279 4qub:A (1.689) BS02 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    280 4qub:A (1.689) BS03 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    281 4qub:A (1.689) BS04 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    282 4qub:A (1.689) BS05 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    283 4qub:A (1.689) BS06 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    284 4que:A (1.843) BS03 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    285 4que:C (1.843) BS03 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    286 4qug:A (1.917) BS03 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    287 4qug:A (1.917) BS04 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    288 4qug:C (1.917) BS02 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    289 4quh:A (1.759) BS03 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    290 4quh:A (1.759) BS04 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    291 4quh:C (1.759) BS03 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    292 4quj:A (1.498) BS02 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    293 4qul:A (1.898) BS02 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    294 4qul:A (1.898) BS03 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    295 4qul:A (1.898) BS04 AZI 3.4.22.56 GO:0001554 ... P42574 25343534
    296 4rbm:A (1.75) BS04 AZI 3.4.22.47 GO:0006508 ... Q51817 25266723
    297 4rbm:A (1.75) BS05 AZI 3.4.22.47 GO:0006508 ... Q51817 25266723
    298 4xyb:A (1.38) BS02 AZI 1.17.1.9 GO:0000166 ... G8NVB5 26104866
    299 4xyb:B (1.38) BS02 AZI 1.17.1.9 GO:0000166 ... G8NVB5 26104866
    300 4ytg:A (1.8) BS03 AZI 3.5.3.- GO:0004668 ... Q9RQJ2 26132828
    301 5a12:A (1.4) BS02 AZI 1.13.11.49 GO:0016491 ... A0A0M3KL46 26287794
    302 5a12:B (1.4) BS02 AZI 1.13.11.49 GO:0016491 ... A0A0M3KL46 26287794
    303 5a12:C (1.4) BS02 AZI 1.13.11.49 GO:0016491 ... A0A0M3KL46 26287794
    304 5a12:D (1.4) BS02 AZI 1.13.11.49 GO:0016491 ... A0A0M3KL46 26287794
    305 5a12:E (1.4) BS02 AZI 1.13.11.49 GO:0016491 ... A0A0M3KL46 26287794
    306 5ag2:A (1.77) BS02 AZI 1.15.1.1 GO:0004784 ... P41977 26257399
    307 5ag2:C (1.77) BS02 AZI 1.15.1.1 GO:0004784 ... P41977 26257399
    308 5dn9:A (1.5) BS02 AZI 1.17.1.9 GO:0000166 ... A0A0A1EQY0 27100912
    309 5dn9:B (1.5) BS02 AZI 1.17.1.9 GO:0000166 ... A0A0A1EQY0 27100912
    310 5edf:A (1.4) BS01 AZI ? N/A Q08840 28084396
    311 5ibp:A (1.38) BS02 AZI 3.4.22.56 GO:0001554 ... P42574 27681633
    312 5ibp:A (1.38) BS03 AZI 3.4.22.56 GO:0001554 ... P42574 27681633
    313 5jdt:A (1.0) BS02 AZI 3.2.1.17 GO:0003796 ... P00720 27673570
    314 5l6x:A (2.0) BS01 AZI 2.5.1.18 GO:0000302 ... P09211 N/A
    315 5l6x:A (2.0) BS02 AZI 2.5.1.18 GO:0000302 ... P09211 N/A
    316 5l6x:B (2.0) BS01 AZI 2.5.1.18 GO:0000302 ... P09211 N/A
    317 5l6x:B (2.0) BS02 AZI 2.5.1.18 GO:0000302 ... P09211 N/A
    318 5mba:A (1.9) BS01 AZI ? GO:0005344 ... P02210 1931125
    319 5mun:A (1.8) BS01 AZI 3.4.22.47 GO:0004197 ... Q51817 28196869
    320 5nyw:J (2.501) BS01 AZI N/A GO:0005839 ... N/A 29258816
    321 5o4q:B (1.9) BS03 AZI 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    322 5o4q:F (1.9) BS01 AZI 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    323 5o4q:H (1.9) BS03 AZI 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    324 5o4q:J (1.9) BS03 AZI 1.10.3.2 GO:0005507 ... A0A0M4FJ81 29512633
    325 5ohh:B (1.42) BS02 AZI 4.2.1.1 GO:0004089 ... Q8N1Q1 N/A
    326 5t30:A (1.77) BS02 AZI 1.15.1.1 GO:0000302 ... P04179 28461152
    327 5z84:A (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    328 5z84:A (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    329 5z84:N (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    330 5z84:N (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    331 5z85:A (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    332 5z85:A (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    333 5z85:N (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    334 5z85:N (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    335 5z86:A (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    336 5z86:A (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    337 5z86:N (1.85) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    338 5z86:N (1.85) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    339 5zco:A (1.9) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    340 5zco:A (1.9) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    341 5zco:N (1.9) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    342 5zco:N (1.9) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    343 5zcp:A (1.65) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    344 5zcp:A (1.65) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    345 5zcp:N (1.65) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    346 5zcp:N (1.65) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    347 5zcq:A (1.65) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    348 5zcq:A (1.65) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    349 5zcq:N (1.65) BS05 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    350 5zcq:N (1.65) BS06 AZI 7.1.1.9 GO:0004129 ... P00396 30077971
    351 6bdv:A (1.938) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    352 6bfj:A (1.543) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    353 6bfl:A (1.87) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    354 6bfo:A (1.54) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    355 6bfo:A (1.54) BS03 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    356 6bg0:B (2.125) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    357 6bg0:D (2.125) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    358 6bg4:A (1.87) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    359 6bg4:E (1.87) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    360 6bgk:C (1.87) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    361 6bgk:D (1.87) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    362 6bgq:A (1.97) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    363 6bgq:A (1.97) BS03 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    364 6bgq:A (1.97) BS04 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    365 6bgq:B (1.97) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    366 6bgq:B (1.97) BS03 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    367 6bgq:C (1.97) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    368 6bgq:C (1.97) BS03 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    369 6bgq:C (1.97) BS04 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    370 6bgq:D (1.97) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    371 6bgr:A (2.16) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    372 6bgr:A (2.16) BS03 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    373 6bgr:A (2.16) BS04 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    374 6bgr:B (2.16) BS02 AZI 3.4.22.56 GO:0004197 ... P42574 29414778
    375 6d4b:A (1.45) BS02 AZI 1.17.1.9 GO:0000166 ... A0A0A1EQY0 N/A
    376 6d4b:B (1.45) BS02 AZI 1.17.1.9 GO:0000166 ... A0A0A1EQY0 N/A
    377 6d4c:A (1.45) BS02 AZI 1.17.1.9 GO:0000166 ... A0A0A1EQY0 N/A
    378 6d4c:B (1.45) BS02 AZI 1.17.1.9 GO:0000166 ... A0A0A1EQY0 N/A
    379 6qkn:A (2.3) BS04 AZI 1.11.1.5 GO:0009055 ... Q5F5Z9 N/A
    380 6qkn:B (2.3) BS04 AZI 1.11.1.5 GO:0009055 ... Q5F5Z9 N/A
    381 6r2u:B (2.49) BS02 AZI ? GO:0001580 ... P25311 31506272
    382 6t81:A (0.98) BS03 AZI 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 32971003 BindingDB: Ki=1500000nM
    383 6t9w:A (2.15) BS02 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    384 6t9w:B (2.15) BS02 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    385 6t9w:C (2.15) BS02 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    386 6t9x:A (2.2) BS01 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    387 6t9x:B (2.2) BS01 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    388 6t9x:C (2.2) BS01 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    389 6t9x:D (2.2) BS01 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    390 6tb6:B (1.98) BS01 AZI 1.17.1.9 GO:0000166 ... G8NTI5 N/A
    391 6ube:S (1.6) BS02 AZI N/A GO:0004252 ... N/A 33674772
    392 6ube:S (1.6) BS03 AZI N/A GO:0004252 ... N/A 33674772
    393 7arz:A (2.15) BS02 AZI 1.17.1.9 GO:0000166 ... A9SQZ2 N/A
    394 7arz:A (2.15) BS03 AZI 1.17.1.9 GO:0000166 ... A9SQZ2 N/A
    395 7nox:A (1.43) BS06 AZI N/A GO:0019865 ... N/A 34817219
    396 7nox:A (1.43) BS07 AZI N/A GO:0019865 ... N/A 34817219
    397 7nox:A (1.43) BS08 AZI N/A GO:0019865 ... N/A 34817219
    398 7nox:A (1.43) BS09 AZI N/A GO:0019865 ... N/A 34817219
    399 7nox:A (1.43) BS10 AZI N/A GO:0019865 ... N/A 34817219
    400 7nox:B (1.43) BS06 AZI N/A GO:0019865 ... N/A 34817219

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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