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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 441 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1a4e:A (2.4) BS01 AZI 1.11.1.6 GO:0000302 ... P15202 9931255
    2 1a4e:B (2.4) BS01 AZI 1.11.1.6 GO:0000302 ... P15202 9931255
    3 1a4e:C (2.4) BS01 AZI 1.11.1.6 GO:0000302 ... P15202 9931255
    4 1a4e:D (2.4) BS01 AZI 1.11.1.6 GO:0000302 ... P15202 9931255
    5 1asq:A (2.32) BS05 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    6 1asq:A (2.32) BS06 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    7 1asq:B (2.32) BS05 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    8 1asq:B (2.32) BS06 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    9 1avm:A (1.55) BS02 AZI 1.15.1.1 GO:0004784 ... P80293 N/A
    10 1avm:B (1.55) BS02 AZI 1.15.1.1 GO:0004784 ... P80293 N/A
    11 1avn:A (2.0) BS02 AZI 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 9265618 BindingDB: Ki=1500000nM
    12 1azi:A (2.0) BS01 AZI 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 9576852
    13 1cva:A (2.25) BS02 AZI 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8262987 BindingDB: Ki=1500000nM
    14 1fs9:A (2.0) BS02 AZI 1.7.2.2 GO:0005509 ... Q9S1E5 10984487
    15 1i3e:A (1.86) BS01 AZI ? GO:0004601 ... P69891 11514664
    16 1i3e:B (1.86) BS01 AZI ? GO:0004601 ... P69891 11514664
    17 1isc:A (1.8) BS02 AZI 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    18 1isc:B (1.8) BS02 AZI 1.15.1.1 GO:0000303 ... P0AGD3 7849024
    19 1ivj:A (1.9) BS01 AZI 1.14.14.18 GO:0001525 ... P06762 12235152
    20 1jkv:A (1.39) BS02 AZI 1.11.1.6 GO:0004096 ... P60355 11587647
    21 1jkv:B (1.39) BS02 AZI 1.11.1.6 GO:0004096 ... P60355 11587647
    22 1jkv:C (1.39) BS03 AZI 1.11.1.6 GO:0004096 ... P60355 11587647
    23 1jkv:D (1.39) BS02 AZI 1.11.1.6 GO:0004096 ... P60355 11587647
    24 1jkv:E (1.39) BS03 AZI 1.11.1.6 GO:0004096 ... P60355 11587647
    25 1jkv:F (1.39) BS03 AZI 1.11.1.6 GO:0004096 ... P60355 11587647
    26 1kop:A (1.9) BS02 AZI 4.2.1.1 GO:0004089 ... Q50940 9761692
    27 1lkp:A (1.64) BS01 AZI ? GO:0005506 ... P24931 12175244
    28 1lkp:A (1.64) BS02 AZI ? GO:0005506 ... P24931 12175244
    29 1mng:A (1.8) BS02 AZI 1.15.1.1 GO:0004784 ... P61503 7849024
    30 1mng:B (1.8) BS02 AZI 1.15.1.1 GO:0004784 ... P61503 7849024
    31 1nxd:1 (1.9) BS01 AZI ? GO:0030246 ... P02866 15159564
    32 1nxd:1 (1.9) BS02 AZI ? GO:0030246 ... P02866 15159564
    33 1nxd:1 (1.9) BS03 AZI ? GO:0030246 ... P02866 15159564
    34 1nxd:1 (1.9) BS06 AZI ? GO:0030246 ... P02866 15159564
    35 1nxd:2 (1.9) BS01 AZI ? GO:0030246 ... P02866 15159564
    36 1nxd:2 (1.9) BS02 AZI ? GO:0030246 ... P02866 15159564
    37 1nxd:2 (1.9) BS03 AZI ? GO:0030246 ... P02866 15159564
    38 1nxd:3 (1.9) BS01 AZI ? GO:0030246 ... P02866 15159564
    39 1nxd:3 (1.9) BS02 AZI ? GO:0030246 ... P02866 15159564
    40 1nxd:4 (1.9) BS01 AZI ? GO:0030246 ... P02866 15159564
    41 1nxd:4 (1.9) BS02 AZI ? GO:0030246 ... P02866 15159564
    42 1nxd:4 (1.9) BS03 AZI ? GO:0030246 ... P02866 15159564
    43 1ocz:A (2.9) BS03 AZI 7.1.1.9 GO:0004129 ... P00396 9624044
    44 1ocz:A (2.9) BS04 AZI 7.1.1.9 GO:0004129 ... P00396 9624044
    45 1ocz:N (2.9) BS03 AZI 7.1.1.9 GO:0004129 ... P00396 9624044
    46 1ocz:N (2.9) BS04 AZI 7.1.1.9 GO:0004129 ... P00396 9624044
    47 1onk:A (2.1) BS01 AZI 3.2.2.22 GO:0017148 ... P81446 N/A
    48 1onk:B (2.1) BS01 AZI 3.2.2.22 N/A P81446 N/A
    49 1onk:B (2.1) BS02 AZI 3.2.2.22 N/A P81446 N/A
    50 1onk:B (2.1) BS03 AZI 3.2.2.22 N/A P81446 N/A
    51 1onk:B (2.1) BS04 AZI 3.2.2.22 N/A P81446 N/A
    52 1opm:A (2.1) BS02 AZI 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 10504734
    53 1oq4:A (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    54 1oq4:B (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    55 1oq4:C (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    56 1oq4:D (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    57 1oq4:E (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    58 1oq4:F (2.4) BS03 AZI 1.14.19.2 GO:0005515 ... P22337 12704186
    59 1os2:C (2.15) BS06 AZI 3.4.24.65 GO:0004222 ... P39900 12813751
    60 1phm:A (1.9) BS03 AZI 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 9360928
    61 1pp9:A (2.1) BS02 AZI 1.10.2.2 GO:0005739 ... P31800 16024040
    62 1pp9:G (2.1) BS01 AZI 1.10.2.2 GO:0005739 ... P13271 16024040
    63 1pp9:P (2.1) BS02 AZI 1.10.2.2 GO:0005739 ... P00157 16024040
    64 1ppj:A (2.1) BS02 AZI 1.10.2.2 GO:0005739 ... P31800 16024040
    65 1ppj:G (2.1) BS01 AZI 1.10.2.2 GO:0005739 ... P13271 16024040
    66 1ray:A (1.8) BS02 AZI 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8482389 BindingDB: Ki=1500000nM
    67 1rsr:B (2.0) BS03 AZI 1.17.4.1 GO:0004748 ... P69924 N/A
    68 1rsv:A (2.2) BS03 AZI 1.17.4.1 GO:0004748 ... P69924 11328804
    69 1s6a:A (1.69) BS01 AZI ? GO:0005344 ... P73925 15289104
    70 1s8n:A (1.482) BS01 AZI ? GO:0000160 ... P9WGM3 15341725
    71 1swm:A (1.8) BS01 AZI 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 1994031
    72 1sxz:A (2.05) BS04 AZI 1.15.1.1 GO:0000209 ... P00442 N/A
    73 1sxz:B (2.05) BS03 AZI 1.15.1.1 GO:0000209 ... P00442 N/A
    74 1sz6:A (2.05) BS01 AZI 3.2.2.22 GO:0017148 ... P81446 N/A
    75 1sz6:B (2.05) BS01 AZI 3.2.2.22 N/A P81446 N/A
    76 1t0r:A (2.3) BS03 AZI ? GO:0004497 ... O87798 15096510
    77 1th2:D (2.8) BS01 AZI 1.11.1.6 GO:0004096 ... P00432 N/A
    78 1u06:A (1.49) BS01 AZI ? N/A P07751 15928996
    79 1u06:A (1.49) BS02 AZI ? N/A P07751 15928996
    80 1ugb:A (2.0) BS02 AZI 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8987974 BindingDB: Ki=1500000nM
    81 1ugf:A (2.0) BS02 AZI 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 8987974 BindingDB: Ki=1500000nM
    82 1vnc:A (2.1) BS02 AZI 1.11.1.10 GO:0004601 ... P49053 8552646
    83 1vr8:A (1.75) BS01 AZI ? N/A Q9X1V7 16948158
    84 1w6w:A (2.2) BS05 AZI 1.10.3.2
    1.3.3.5
    GO:0005507 ... P07788 16234932
    85 1yaz:A (1.7) BS03 AZI 1.15.1.1 GO:0004784 ... P00445 10026301
    86 1zlz:B (1.55) BS01 AZI 1.15.1.1 GO:0003677 ... P00448 N/A
    87 1zwn:A (1.8) BS01 AZI 3.2.1.17 GO:0003796 ... P00720 N/A
    88 1zwn:A (1.8) BS02 AZI 3.2.1.17 GO:0003796 ... P00720 N/A
    89 1zyt:A (1.7) BS02 AZI 3.2.1.17 GO:0003796 ... P00720 19384990
    90 2a06:A (2.1) BS02 AZI 1.10.2.2 GO:0005739 ... P31800 16024040
    91 2a06:D (2.1) BS03 AZI 7.1.1.8 GO:0009055 ... P00125 16024040
    92 2a06:G (2.1) BS01 AZI 1.10.2.2 GO:0005739 ... P13271 16024040
    93 2a4t:A (1.7) BS01 AZI 3.2.1.17 GO:0003796 ... P00720 N/A
    94 2b5z:A (1.6) BS05 AZI 3.2.1.17 GO:0003796 ... P00698 16511062
    95 2b5z:A (1.6) BS06 AZI 3.2.1.17 GO:0003796 ... P00698 16511062
    96 2bbr:A (1.2) BS01 AZI ? GO:0042981 ... Q98325 16364918
    97 2bcp:A (2.1) BS01 AZI 1.6.3.4 GO:0008137 ... Q5XC60 26506002
    98 2bcp:B (2.1) BS01 AZI 1.6.3.4 GO:0008137 ... Q5XC60 26506002
    99 2bfk:B (2.0) BS01 AZI 3.5.2.6 GO:0008270 ... P04190 15779910
    100 2bfl:B (1.8) BS01 AZI 3.5.2.6 GO:0008270 ... P04190 15779910
    101 2bg6:B (2.3) BS01 AZI 3.5.2.6 GO:0008270 ... P04190 15779910
    102 2bl1:A (2.0) BS01 AZI 2.3.1.- GO:0016746 ... Q9HUU7 16161106
    103 2bl1:A (2.0) BS02 AZI 2.3.1.- GO:0016746 ... Q9HUU7 16161106
    104 2ck3:C (1.95) BS03 AZI 3.6.3.14 GO:0005515 ... P19483 16728506
    105 2ck3:D (1.95) BS02 AZI 7.1.2.2 GO:0005515 ... P00829 16728506
    106 2cuu:A (1.75) BS01 AZI 3.2.1.17 GO:0003796 ... P00720 19384990
    107 2d23:A (1.95) BS03 AZI 3.2.1.8 GO:0000272 ... Q7SI98 19279191
    108 2d23:B (1.95) BS03 AZI 3.2.1.8 GO:0000272 ... Q7SI98 19279191
    109 2e86:A (1.5) BS04 AZI 1.7.2.1 GO:0005507 ... P38501 18358002
    110 2e86:A (1.5) BS05 AZI 1.7.2.1 GO:0005507 ... P38501 18358002
    111 2e86:B (1.5) BS01 AZI 1.7.2.1 GO:0005507 ... P38501 18358002
    112 2e86:C (1.5) BS05 AZI 1.7.2.1 GO:0005507 ... P38501 18358002
    113 2eie:A (1.8) BS01 AZI 1.1.3.9 GO:0005576 ... P0CS93 17385891
    114 2fhx:A (1.9) BS02 AZI 3.5.2.6 GO:0008270 ... Q8G9Q0 16460758
    115 2fhx:A (1.9) BS03 AZI 3.5.2.6 GO:0008270 ... Q8G9Q0 16460758
    116 2fhx:B (1.9) BS02 AZI 3.5.2.6 GO:0008270 ... Q8G9Q0 16460758
    117 2gsd:A (1.95) BS01 AZI 1.17.1.9 GO:0000166 ... O08375 19966418
    118 2iuo:B (1.9) BS02 AZI 4.2.1.104 GO:0003677 ... P00816 N/A
    119 2ivb:A (1.95) BS01 AZI 4.2.1.104 GO:0003677 ... P00816 N/A
    120 2ivb:C (1.95) BS01 AZI 4.2.1.104 GO:0003677 ... P00816 N/A
    121 2ivb:D (1.95) BS01 AZI 4.2.1.104 GO:0003677 ... P00816 N/A
    122 2ivb:G (1.95) BS01 AZI 4.2.1.104 GO:0003677 ... P00816 N/A
    123 2j8m:A (1.44) BS01 AZI 2.3.1.- GO:0016746 ... Q9HUU7 17253769
    124 2j8m:B (1.44) BS01 AZI 2.3.1.- GO:0016746 ... Q9HUU7 17253769
    125 2j8m:B (1.44) BS02 AZI 2.3.1.- GO:0016746 ... Q9HUU7 17253769
    126 2j8m:B (1.44) BS03 AZI 2.3.1.- GO:0016746 ... Q9HUU7 17253769
    127 2j8m:B (1.44) BS04 AZI 2.3.1.- GO:0016746 ... Q9HUU7 17253769
    128 2j8m:B (1.44) BS05 AZI 2.3.1.- GO:0016746 ... Q9HUU7 17253769
    129 2j8m:B (1.44) BS06 AZI 2.3.1.- GO:0016746 ... Q9HUU7 17253769
    130 2j8r:A (1.55) BS01 AZI 2.3.1.- GO:0016746 ... Q9HUU7 17253769
    131 2j8r:B (1.55) BS02 AZI 2.3.1.- GO:0016746 ... Q9HUU7 17253769
    132 2jiz:C (2.3) BS02 AZI 3.6.1.34 GO:0005515 ... P19483 17698806
    133 2jiz:D (2.3) BS02 AZI 7.1.2.2 GO:0005515 ... P00829 17698806
    134 2jiz:J (2.3) BS02 AZI 3.6.1.34 GO:0005515 ... P19483 17698806
    135 2jiz:K (2.3) BS02 AZI 7.1.2.2 GO:0005515 ... P00829 17698806
    136 2jj1:K (2.7) BS02 AZI 7.1.2.2 GO:0005515 ... P00829 17698806
    137 2jj2:D (2.4) BS02 AZI 7.1.2.2 GO:0005515 ... P00829 17698806
    138 2jj2:K (2.4) BS02 AZI 7.1.2.2 GO:0005515 ... P00829 17698806
    139 2jlm:F (2.35) BS01 AZI ? GO:0016740 ... Q6FBS8 19135125
    140 2jlm:F (2.35) BS02 AZI ? GO:0016740 ... Q6FBS8 19135125
    141 2mhr:A (1.3) BS01 AZI ? GO:0005344 ... P02247 3681996
    142 2nad:A (2.05) BS01 AZI 1.17.1.9 GO:0005737 ... P33160 8114093
    143 2nad:B (2.05) BS01 AZI 1.17.1.9 GO:0005737 ... P33160 8114093
    144 2o5m:X (1.65) BS01 AZI 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 17905436
    145 2ozp:A (2.01) BS01 AZI 1.2.1.103 GO:0003942 ... Q5SH26 N/A
    146 2ozp:A (2.01) BS02 AZI 1.2.1.103 GO:0003942 ... Q5SH26 N/A
    147 2rg9:A (1.95) BS01 AZI 3.2.2.22 GO:0017148 ... P81446 N/A
    148 2rg9:B (1.95) BS01 AZI 3.2.2.22 N/A P81446 N/A
    149 2rg9:B (1.95) BS02 AZI 3.2.2.22 N/A P81446 N/A
    150 2tsb:A (2.3) BS01 AZI ? GO:0005507 ... P00282 15299604
    151 2tsb:B (2.3) BS01 AZI ? GO:0005507 ... P00282 15299604
    152 2tsb:C (2.3) BS01 AZI ? GO:0005507 ... P00282 15299604
    153 2tsb:D (2.3) BS01 AZI ? GO:0005507 ... P00282 15299604
    154 2vi7:C (2.25) BS01 AZI ? GO:0016747 ... Q9I3W7 18453699
    155 2vuo:A (1.95) BS02 AZI ? N/A P01870 18764781
    156 2vuo:B (1.95) BS03 AZI ? N/A P01870 18764781
    157 2wjp:A (1.6) BS02 AZI 6.3.2.9 GO:0005515 ... P14900 20804196
    158 2wjp:A (1.6) BS03 AZI 6.3.2.9 GO:0005515 ... P14900 20804196
    159 2wjp:A (1.6) BS04 AZI 6.3.2.9 GO:0005515 ... P14900 20804196
    160 2wqy:A (2.1) BS01 AZI 1.3.5.1 GO:0005739 ... Q9YHT1 N/A
    161 2wsr:A (1.65) BS01 AZI 5.3.1.1 GO:0004807 ... P04789 N/A
    162 2x5o:A (1.46) BS02 AZI 6.3.2.9 GO:0005515 ... P14900 20804196
    163 2y68:A (1.49) BS02 AZI 6.3.2.9 GO:0005515 ... P14900 21591605
    164 2y68:A (1.49) BS03 AZI 6.3.2.9 GO:0005515 ... P14900 21591605
    165 2zo5:A (1.7) BS09 AZI 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    166 2zo5:B (1.7) BS09 AZI 1.7.2.2 GO:0005509 ... L0DSL2 19393666
    167 3abw:A (1.9) BS03 AZI N/A GO:0005216 ... N/A N/A
    168 3abw:B (1.9) BS03 AZI N/A GO:0005216 ... N/A N/A
    169 3abw:D (1.9) BS03 AZI N/A GO:0005216 ... N/A N/A
    170 3baw:A (2.0) BS03 AZI 3.2.1.1 GO:0003824 ... P04746 18284212
    171 3baw:A (2.0) BS04 AZI 3.2.1.1 GO:0003824 ... P04746 18284212
    172 3bax:A (1.9) BS03 AZI 3.2.1.1 GO:0003824 ... P04746 18284212
    173 3bax:A (1.9) BS04 AZI 3.2.1.1 GO:0003824 ... P04746 18284212
    174 3bgo:S (1.8) BS01 AZI 3.4.21.62 GO:0004252 ... P00782 19761257
    175 3c61:A (1.8) BS01 AZI 1.3.98.1 GO:0000166 ... D0VWT2 N/A
    176 3cwb:P (3.51) BS01 AZI ? GO:0005737 ... P18946 18996700
    177 3e15:D (2.0) BS01 AZI 1.1.1.49 GO:0005975 ... A5K3M1 N/A
    178 3e7a:B (1.63) BS04 AZI 3.1.3.16 GO:0016787 ... P62136 18992256
    179 3e7b:A (1.7) BS04 AZI 3.1.3.16 GO:0016787 ... P62136 18992256
    180 3e7b:A (1.7) BS05 AZI 3.1.3.16 GO:0016787 ... P62136 18992256
    181 3e7b:B (1.7) BS04 AZI 3.1.3.16 GO:0016787 ... P62136 18992256
    182 3fuc:C (1.45) BS02 AZI 2.4.2.1 GO:0003824 ... P55859 19944078
    183 3g3v:A (2.1) BS01 AZI 3.2.1.17 GO:0003796 ... P00720 19384990
    184 3g3w:A (2.3) BS02 AZI 3.2.1.17 GO:0003796 ... P00720 19384990
    185 3g3x:A (1.8) BS02 AZI 3.2.1.17 GO:0003796 ... P00720 19384990
    186 3gas:D (1.8) BS03 AZI 1.14.99.3 GO:0005829 ... C0LU01 N/A
    187 3hfu:A (2.6) BS01 AZI ? GO:0006355 ... P27111 N/A
    188 3hfu:B (2.6) BS01 AZI ? GO:0006355 ... P27111 N/A
    189 3hfu:C (2.6) BS01 AZI ? GO:0006355 ... P27111 N/A
    190 3hfu:D (2.6) BS01 AZI ? GO:0006355 ... P27111 N/A
    191 3hwl:A (1.8) BS01 AZI 3.2.1.17 GO:0003796 ... P00720 19995976
    192 3hwl:A (1.8) BS02 AZI 3.2.1.17 GO:0003796 ... P00720 19995976
    193 3jtm:A (1.3) BS01 AZI 1.17.1.9 GO:0005739 ... Q9S7E4 N/A
    194 3l2x:A (1.8) BS02 AZI 3.2.1.17 GO:0003796 ... P00720 N/A
    195 3lj9:A (2.1) BS02 AZI 1.15.1.1 GO:0004784 ... P84612 20732427
    196 3lj9:B (2.1) BS03 AZI 1.15.1.1 GO:0004784 ... P84612 20732427
    197 3lo1:A (1.6) BS01 AZI ? GO:0005576 ... P59665 20220136
    198 3lo1:A (1.6) BS02 AZI ? GO:0005576 ... P59665 20220136
    199 3mid:A (3.06) BS03 AZI 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 20958070
    200 3mid:A (3.06) BS04 AZI 1.14.17.3
    4.3.2.5
    GO:0003824 ... P14925 20958070

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218