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BioLiP
Download all results in tab-seperated text for 9 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1ll9:B (1.87) BS01 AXL 3.5.2.6 GO:0008800 ... P00811 12323371
    2 3n7w:A (1.7) BS01 AXL 3.5.2.6 GO:0005576 ... P9WKD3 N/A
    3 4ebn:B (2.85) BS01 AXL 3.5.2.6 GO:0005576 ... P9WKD3 N/A
    4 4ebn:C (2.85) BS01 AXL 3.5.2.6 GO:0005576 ... P9WKD3 N/A
    5 6i1e:A (1.64) BS01 AXL 3.4.16.4 GO:0000917 ... G3XD46 31301409
    6 6i1f:A (1.89) BS01 AXL N/A GO:0008658 ... N/A N/A
    7 6i1f:B (1.89) BS01 AXL N/A GO:0008658 ... N/A N/A
    8 6kgv:A (2.301) BS02 AXL ? GO:0008658 ... L0T911 32086254
    9 9bis:A (3.2) BS01 AXL N/A GO:0005886 ... Q63424 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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