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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 7ssf:A (1.45) BS02 AX9 N/A GO:0030089 ... N/A N/A
    2 7ssf:B (1.45) BS01 AX9 ? GO:0009507 ... U5T8W0 N/A
    3 7ssf:D (1.45) BS02 AX9 ? GO:0009507 ... U5T8W0 N/A
    4 7ssf:E (1.45) BS02 AX9 N/A GO:0030089 ... N/A N/A
    5 7ssf:F (1.45) BS01 AX9 ? GO:0009507 ... U5T8W0 N/A
    6 7ssf:G (1.45) BS03 AX9 N/A GO:0030089 ... N/A N/A
    7 7ssf:H (1.45) BS01 AX9 ? GO:0009507 ... U5T8W0 N/A
    8 7sut:A (1.49) BS02 AX9 ? GO:0030089 ... A0A7S0U215 37957226
    9 7sut:B (1.49) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    10 7sut:B (1.49) BS05 AX9 ? GO:0009507 ... U5T8W0 37957226
    11 7sut:C (1.49) BS02 AX9 N/A GO:0030089 ... N/A 37957226
    12 7sut:D (1.49) BS02 AX9 ? GO:0009507 ... U5T8W0 37957226
    13 7sut:E (1.49) BS02 AX9 ? GO:0030089 ... A0A7S0U215 37957226
    14 7sut:F (1.49) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    15 7sut:F (1.49) BS05 AX9 ? GO:0009507 ... U5T8W0 37957226
    16 7sut:H (1.49) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    17 7t7u:A (1.8) BS02 AX9 ? GO:0030089 ... A0A067XP78 36721353
    18 7t7u:A (1.8) BS04 AX9 ? GO:0030089 ... A0A067XP78 36721353
    19 7t7u:B (1.8) BS01 AX9 ? GO:0009536 ... A0A067XP72 36721353
    20 7t7u:B (1.8) BS03 AX9 ? GO:0009536 ... A0A067XP72 36721353
    21 7t7u:D (1.8) BS02 AX9 ? GO:0009536 ... A0A067XP72 36721353
    22 7t89:A (1.0) BS01 AX9 ? GO:0030089 ... A0A067XP79 36721353
    23 7t89:B (1.0) BS01 AX9 ? GO:0009536 ... A0A067XP89 36721353
    24 7t89:C (1.0) BS01 AX9 ? GO:0030089 ... A0A067XP79 36721353
    25 7t89:D (1.0) BS01 AX9 ? GO:0009536 ... A0A067XP89 36721353
    26 8el3:A (1.57) BS02 AX9 ? GO:0030089 ... U5TBU5 37957226
    27 8el3:B (1.57) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    28 8el3:C (1.57) BS03 AX9 ? GO:0030089 ... U5TBJ3 37957226
    29 8el3:D (1.57) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    30 8el3:E (1.57) BS02 AX9 ? GO:0030089 ... U5TBJ3 37957226
    31 8el3:F (1.57) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    32 8el3:G (1.57) BS03 AX9 ? GO:0030089 ... U5TBU5 37957226
    33 8el3:H (1.57) BS02 AX9 ? GO:0009507 ... U5T8W0 37957226
    34 8el3:I (1.57) BS02 AX9 ? GO:0030089 ... U5TBJ3 37957226
    35 8el3:J (1.57) BS03 AX9 ? GO:0030089 ... U5TBU5 37957226
    36 8el3:K (1.57) BS02 AX9 ? GO:0030089 ... U5TBU5 37957226
    37 8el3:L (1.57) BS03 AX9 ? GO:0030089 ... U5TBJ3 37957226
    38 8el4:A (1.73) BS02 AX9 ? GO:0030089 ... U5TBU5 37957226
    39 8el4:B (1.73) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    40 8el4:C (1.73) BS03 AX9 ? GO:0030089 ... U5TBJ3 37957226
    41 8el4:D (1.73) BS02 AX9 ? GO:0009507 ... U5T8W0 37957226
    42 8el4:E (1.73) BS02 AX9 ? GO:0030089 ... U5TBJ3 37957226
    43 8el4:F (1.73) BS03 AX9 ? GO:0030089 ... U5TBU5 37957226
    44 8el5:A (1.67) BS02 AX9 ? GO:0030089 ... U5TBU5 37957226
    45 8el5:B (1.67) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    46 8el5:C (1.67) BS03 AX9 ? GO:0030089 ... U5TBJ3 37957226
    47 8el5:D (1.67) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    48 8el5:E (1.67) BS03 AX9 ? GO:0030089 ... U5TBJ3 37957226
    49 8el5:F (1.67) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    50 8el5:G (1.67) BS03 AX9 ? GO:0030089 ... U5TBU5 37957226
    51 8el5:H (1.67) BS02 AX9 ? GO:0009507 ... U5T8W0 37957226
    52 8el5:I (1.67) BS02 AX9 ? GO:0030089 ... U5TBJ3 37957226
    53 8el5:J (1.67) BS03 AX9 ? GO:0030089 ... U5TBU5 37957226
    54 8el5:K (1.67) BS03 AX9 ? GO:0030089 ... U5TBU5 37957226
    55 8el5:L (1.67) BS03 AX9 ? GO:0030089 ... U5TBJ3 37957226
    56 8el6:A (1.95) BS02 AX9 ? GO:0030089 ... U5TBU5 37957226
    57 8el6:B (1.95) BS01 AX9 ? GO:0009507 ... U5T8W0 37957226
    58 8el6:C (1.95) BS03 AX9 ? GO:0030089 ... U5TBJ3 37957226
    59 8el6:D (1.95) BS02 AX9 ? GO:0009507 ... U5T8W0 37957226
    60 8el6:E (1.95) BS02 AX9 ? GO:0030089 ... U5TBJ3 37957226
    61 8el6:F (1.95) BS03 AX9 ? GO:0030089 ... U5TBU5 37957226
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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