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BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 3ump:B (1.849) BS01 ATP 2.7.1.11 GO:0000287 ... P06999 23823238 PDBbind: -logKd/Ki=2.99, Ki=1026uM
    1602 3ump:B (1.849) BS02 ATP 2.7.1.11 GO:0000287 ... P06999 23823238 PDBbind: -logKd/Ki=2.99, Ki=1026uM
    1603 3uqd:A (2.14) BS01 ATP 2.7.1.11 GO:0000287 ... P06999 30996866
    1604 3uqd:B (2.14) BS03 ATP 2.7.1.11 GO:0000287 ... P06999 30996866
    1605 3uqd:C (2.14) BS02 ATP 2.7.1.11 GO:0000287 ... P06999 30996866
    1606 3uqd:C (2.14) BS03 ATP 2.7.1.11 GO:0000287 ... P06999 30996866
    1607 3uqd:D (2.14) BS02 ATP 2.7.1.11 GO:0000287 ... P06999 30996866
    1608 3uqe:A (2.2) BS01 ATP 2.7.1.11 GO:0000287 ... P06999 N/A
    1609 3uqe:B (2.2) BS01 ATP 2.7.1.11 GO:0000287 ... P06999 N/A
    1610 3v01:A (2.705) BS02 ATP 2.7.12.2 GO:0004672 ... Q02750 22506516
    1611 3v04:A (2.7) BS02 ATP 2.7.12.2 GO:0004672 ... Q02750 22506516
    1612 3v2u:C (2.105) BS02 ATP ? GO:0000435 ... P13045 22302941
    1613 3v2u:D (2.105) BS02 ATP ? GO:0000435 ... P13045 22302941
    1614 3v4s:B (2.02) BS01 ATP N/A GO:0004638 ... N/A 25372694
    1615 3vez:A (2.4) BS03 ATP 6.1.2.2 GO:0003824 ... Q70IY1 22383337
    1616 3vh4:A (2.65) BS02 ATP ? GO:0008641 ... P38862 22055191
    1617 3vnq:A (2.1) BS01 ATP N/A N/A N/A N/A
    1618 3vnu:A (3.2) BS03 ATP ?
    2.7.7.48    		 GO:0000166 ... P0A6N3
    P0A6P3
    P14647    		 22884418
    1619 3vvh:A (2.0) BS02 ATP 2.7.12.2 GO:0004672 ... Q02750 N/A
    1620 3vvh:B (2.0) BS02 ATP 2.7.12.2 GO:0004672 ... Q02750 N/A
    1621 3vvh:C (2.0) BS02 ATP 2.7.12.2 GO:0004672 ... Q02750 N/A
    1622 3vx4:A (2.69) BS01 ATP ? GO:0005524 ... Q8DW05 23534432
    1623 3vx4:A (2.69) BS03 ATP ? GO:0005524 ... Q8DW05 23534432
    1624 3vx4:D (2.69) BS01 ATP ? GO:0005524 ... Q8DW05 23534432
    1625 3vx4:D (2.69) BS02 ATP ? GO:0005524 ... Q8DW05 23534432
    1626 3w1g:A (2.55) BS02 ATP 6.5.1.1 GO:0003677 ... P49917 23523427
    1627 3w2w:A (2.5) BS02 ATP ? N/A Q8U1S6 23583914
    1628 3w2w:A (2.5) BS03 ATP ? N/A Q8U1S6 23583914
    1629 3w3d:A (1.8) BS01 ATP 3.6.4.- GO:0005524 ... P63270 N/A
    1630 3w5o:A (2.84) BS01 ATP 6.5.1.1 GO:0003677 ... P49917 23523427
    1631 3w5o:B (2.84) BS01 ATP 6.5.1.1 GO:0003677 ... P49917 23523427
    1632 3wbz:A (2.392) BS01 ATP N/A GO:0000287 ... N/A 24324136
    1633 3wbz:A (2.392) BS02 ATP N/A GO:0000287 ... N/A 24324136
    1634 3wbz:A (2.392) BS05 ATP N/A GO:0000287 ... N/A 24324136
    1635 3wbz:B (2.392) BS01 ATP N/A GO:0000287 ... N/A 24324136
    1636 3wbz:B (2.392) BS02 ATP N/A GO:0000287 ... N/A 24324136
    1637 3wbz:B (2.392) BS03 ATP N/A GO:0000287 ... N/A 24324136
    1638 3wbz:C (2.392) BS01 ATP N/A GO:0000287 ... N/A 24324136
    1639 3wbz:C (2.392) BS02 ATP N/A GO:0000287 ... N/A 24324136
    1640 3wbz:C (2.392) BS05 ATP N/A GO:0000287 ... N/A 24324136
    1641 3wbz:D (2.392) BS01 ATP N/A GO:0000287 ... N/A 24324136
    1642 3wbz:D (2.392) BS02 ATP N/A GO:0000287 ... N/A 24324136
    1643 3wbz:D (2.392) BS03 ATP N/A GO:0000287 ... N/A 24324136
    1644 3wbz:E (2.392) BS01 ATP N/A GO:0000287 ... N/A 24324136
    1645 3wbz:E (2.392) BS02 ATP N/A GO:0000287 ... N/A 24324136
    1646 3wbz:E (2.392) BS05 ATP N/A GO:0000287 ... N/A 24324136
    1647 3wbz:F (2.392) BS01 ATP N/A GO:0000287 ... N/A 24324136
    1648 3wbz:F (2.392) BS02 ATP N/A GO:0000287 ... N/A 24324136
    1649 3wbz:F (2.392) BS03 ATP N/A GO:0000287 ... N/A 24324136
    1650 3wbz:G (2.392) BS01 ATP N/A GO:0000287 ... N/A 24324136
    1651 3wbz:G (2.392) BS02 ATP N/A GO:0000287 ... N/A 24324136
    1652 3wbz:G (2.392) BS05 ATP N/A GO:0000287 ... N/A 24324136
    1653 3wbz:H (2.392) BS01 ATP N/A GO:0000287 ... N/A 24324136
    1654 3wbz:H (2.392) BS02 ATP N/A GO:0000287 ... N/A 24324136
    1655 3wbz:H (2.392) BS03 ATP N/A GO:0000287 ... N/A 24324136
    1656 3wdl:A (2.4) BS01 ATP 6.3.2.36 GO:0005524 ... Q5JIZ8 24638914
    1657 3wdl:A (2.4) BS02 ATP 6.3.2.36 GO:0005524 ... Q5JIZ8 24638914
    1658 3wdl:B (2.4) BS01 ATP 6.3.2.36 GO:0005524 ... Q5JIZ8 24638914
    1659 3wdl:C (2.4) BS01 ATP 6.3.2.36 GO:0005524 ... Q5JIZ8 24638914
    1660 3wdl:C (2.4) BS02 ATP 6.3.2.36 GO:0005524 ... Q5JIZ8 24638914
    1661 3wdl:D (2.4) BS01 ATP 6.3.2.36 GO:0005524 ... Q5JIZ8 24638914
    1662 3whk:A (2.6) BS01 ATP ? GO:0005524 ... P33297
    Q8U4H3    		 24685148
    1663 3whk:B (2.6) BS01 ATP ? GO:0005524 ... P33297
    Q8U4H3    		 24685148
    1664 3whk:C (2.6) BS01 ATP ? GO:0005524 ... P33297
    Q8U4H3    		 24685148
    1665 3whk:D (2.6) BS01 ATP ? GO:0005524 ... P33297
    Q8U4H3    		 24685148
    1666 3whk:E (2.6) BS01 ATP ? GO:0005524 ... P33297
    Q8U4H3    		 24685148
    1667 3whk:F (2.6) BS01 ATP ? GO:0005524 ... P33297
    Q8U4H3    		 24685148
    1668 3whk:G (2.6) BS01 ATP ? GO:0005524 ... P33297
    Q8U4H3    		 24685148
    1669 3whk:H (2.6) BS01 ATP ? GO:0005524 ... P33297
    Q8U4H3    		 24685148
    1670 3whl:A (4.0) BS01 ATP ? GO:0005524 ... P33297
    Q8U4H3    		 24685148
    1671 3whl:C (4.0) BS01 ATP ? GO:0005524 ... P33297
    Q8U4H3    		 24685148
    1672 3whl:E (4.0) BS01 ATP ? GO:0005524 ... P33297
    Q8U4H3    		 24685148
    1673 3whl:G (4.0) BS01 ATP ? GO:0005524 ... P33297
    Q8U4H3    		 24685148
    1674 3wjq:A (1.645) BS03 ATP ? GO:0005515 ... Q5JII7 24297906
    1675 3wqu:A (2.8) BS01 ATP ? GO:0005515 ... Q6GHQ0 24746687
    1676 3wqu:B (2.8) BS01 ATP ? GO:0005515 ... Q6GHQ0 24746687
    1677 3wqu:C (2.8) BS01 ATP ? GO:0005515 ... Q6GHQ0 24746687
    1678 3wqu:D (2.8) BS01 ATP ? GO:0005515 ... Q6GHQ0 24746687
    1679 3wt0:A (2.0) BS01 ATP ? GO:0051301 ... Q8NX33 N/A
    1680 3wt0:B (2.0) BS01 ATP ? GO:0051301 ... Q8NX33 N/A
    1681 3wt0:C (2.0) BS01 ATP ? GO:0051301 ... Q8NX33 N/A
    1682 3wt0:D (2.0) BS01 ATP ? GO:0051301 ... Q8NX33 N/A
    1683 3wv8:A (1.8) BS01 ATP 2.7.7.- GO:0005524 ... D9PY12 25882909
    1684 3wv8:B (1.8) BS01 ATP 2.7.7.- GO:0005524 ... D9PY12 25882909
    1685 3wv9:A (2.75) BS01 ATP 2.7.7.- GO:0005524 ... D9PY12 25882909
    1686 3wv9:B (2.75) BS01 ATP 2.7.7.- GO:0005524 ... D9PY12 25882909
    1687 3wv9:C (2.75) BS01 ATP 2.7.7.- GO:0005524 ... D9PY12 25882909
    1688 3wv9:D (2.75) BS01 ATP 2.7.7.- GO:0005524 ... D9PY12 25882909
    1689 3wvl:A (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1690 3wvl:B (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1691 3wvl:C (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1692 3wvl:D (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1693 3wvl:E (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1694 3wvl:F (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1695 3wvl:G (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1696 3wvl:H (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1697 3wvl:I (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1698 3wvl:J (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1699 3wvl:K (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1700 3wvl:L (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1701 3wvl:M (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1702 3wvl:N (3.788) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 25174333
    1703 3x2u:A (2.4) BS02 ATP 2.7.11.11 GO:0000122 ... P05132 26585512
    1704 3x2v:A (1.77) BS03 ATP 2.7.11.11 GO:0000122 ... P05132 26585512
    1705 3x2w:A (1.7) BS03 ATP 2.7.11.11 GO:0000122 ... P05132 26585512
    1706 3zc7:A (2.1) BS01 ATP 2.7.7.108 N/A E6Z0R3 23738009
    1707 3zcb:A (1.94) BS01 ATP 2.7.7.108 N/A E6Z0R3 23738009
    1708 3zcb:B (1.94) BS01 ATP ? GO:0005515 ... E6Z0R4 23738009
    1709 3zcn:A (1.7) BS01 ATP 2.7.7.108 GO:0000287 ... Q8E9K5 23738009
    1710 3zcn:B (1.7) BS01 ATP 2.7.7.108 GO:0000287 ... Q8E9K5 23738009
    1711 3zia:A (2.5) BS01 ATP ? GO:0005524 ... P07251 23407639
    1712 3zia:K (2.5) BS01 ATP ? GO:0005524 ... P07251 23407639
    1713 3zs7:A (2.0) BS02 ATP 2.7.1.35 GO:0005524 ... O15927 22857512
    1714 4a06:A (2.0) BS01 ATP 2.7.11.1 GO:0004672 ... O15530 22118680
    1715 4a07:A (1.85) BS01 ATP 2.7.11.1 GO:0004672 ... O15530 22118680
    1716 4a2a:A (1.8) BS02 ATP ? GO:0005515 ... Q9WZU0 22473211
    1717 4a2a:B (1.8) BS02 ATP ? GO:0005515 ... Q9WZU0 22473211
    1718 4a6x:A (1.548) BS01 ATP ? GO:0003677 ... O74036 27419043
    1719 4a6x:B (1.548) BS01 ATP ? GO:0003677 ... O74036 27419043
    1720 4a8f:A (3.3) BS01 ATP 2.7.7.48 GO:0000166 ... P11124 22205747
    1721 4a8f:A (3.3) BS02 ATP 2.7.7.48 GO:0000166 ... P11124 22205747
    1722 4a8f:B (3.3) BS02 ATP 2.7.7.48 GO:0000166 ... P11124 22205747
    1723 4a8f:B (3.3) BS03 ATP 2.7.7.48 GO:0000166 ... P11124 22205747
    1724 4a8f:C (3.3) BS01 ATP 2.7.7.48 GO:0000166 ... P11124 22205747
    1725 4a8f:C (3.3) BS02 ATP 2.7.7.48 GO:0000166 ... P11124 22205747
    1726 4a8m:P (2.92) BS03 ATP 2.7.7.48 GO:0000166 ... P11124 22205747
    1727 4a8m:Q (2.92) BS04 ATP 2.7.7.48 GO:0000166 ... P11124 22205747
    1728 4a8q:B (3.06) BS03 ATP 2.7.7.48 GO:0000166 ... P11124 22205747
    1729 4a8q:C (3.06) BS02 ATP 2.7.7.48 GO:0000166 ... P11124 22205747
    1730 4a8s:A (2.9) BS03 ATP 2.7.7.48 GO:0000166 ... P11124 22205747
    1731 4a8s:B (2.9) BS03 ATP 2.7.7.48 GO:0000166 ... P11124 22205747
    1732 4a8y:C (3.41) BS02 ATP 2.7.7.48 GO:0000166 ... P11124 22205747
    1733 4aaq:A (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1734 4aaq:B (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1735 4aaq:C (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1736 4aaq:D (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1737 4aaq:E (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1738 4aaq:F (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1739 4aaq:G (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1740 4aar:A (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1741 4aar:B (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1742 4aar:C (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1743 4aar:D (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1744 4aar:E (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1745 4aar:F (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1746 4aar:G (8.0) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1747 4aas:A (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1748 4aas:B (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1749 4aas:C (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1750 4aas:D (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1751 4aas:E (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1752 4aas:F (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1753 4aas:G (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1754 4aau:A (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1755 4aau:B (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1756 4aau:C (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1757 4aau:D (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1758 4aau:E (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1759 4aau:F (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1760 4aau:G (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1761 4aau:H (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1762 4aau:I (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1763 4aau:J (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1764 4aau:K (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1765 4aau:L (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1766 4aau:M (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1767 4aau:N (8.5) BS02 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1768 4ab2:A (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1769 4ab2:B (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1770 4ab2:C (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1771 4ab2:D (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1772 4ab2:E (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1773 4ab2:F (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1774 4ab2:G (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1775 4ab2:H (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1776 4ab2:I (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1777 4ab2:J (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1778 4ab2:K (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1779 4ab2:L (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1780 4ab2:M (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1781 4ab2:N (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1782 4ab2:N (8.5) BS02 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1783 4ab3:A (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1784 4ab3:B (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1785 4ab3:C (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1786 4ab3:D (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1787 4ab3:E (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1788 4ab3:F (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1789 4ab3:G (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1790 4ab3:H (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1791 4ab3:I (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1792 4ab3:J (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1793 4ab3:K (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1794 4ab3:L (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1795 4ab3:M (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1796 4ab3:N (8.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 22445172
    1797 4aff:A (1.05) BS01 ATP ? GO:0000166 ... P0A3F4 22868755
    1798 4ai6:A (3.4) BS01 ATP 2.5.1.18 GO:0004364 ... P08515
    P36022    		 22426545
    1799 4ai6:B (3.4) BS02 ATP 2.5.1.18 GO:0004364 ... P08515
    P36022    		 22426545
    1800 4akg:A (3.3) BS01 ATP 2.5.1.18 GO:0004364 ... P08515
    P36022    		 22426545
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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