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BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9601 9b5w:A (3.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9602 9b5x:A (4.16) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9603 9b90:A (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    9604 9b90:B (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    9605 9b90:C (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    9606 9b90:D (3.4) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    9607 9b91:A (3.3) BS03 ATP ? GO:0002250 ... Q8TD43 38750366
    9608 9bkr:A (1.4) BS01 ATP N/A N/A Q14669 N/A
    9609 9bwt:A (2.5) BS01 ATP N/A N/A J3QSS1 39143061
    9610 9bwt:B (2.5) BS01 ATP N/A N/A J3QSS1 39143061
    9611 9c57:L (2.75) BS01 ATP N/A N/A O96019 39088653
    9612 9c6n:J (3.29) BS01 ATP N/A N/A P60709 39088653
    9613 9c6n:L (3.29) BS01 ATP N/A N/A O96019 39088653
    9614 9cc0:A (3.31) BS02 ATP N/A N/A P36776 38979310
    9615 9cc0:B (3.31) BS01 ATP N/A N/A P36776 38979310
    9616 9cc0:C (3.31) BS02 ATP N/A N/A P36776 38979310
    9617 9cc0:D (3.31) BS01 ATP N/A N/A P36776 38979310
    9618 9cc0:D (3.31) BS02 ATP N/A N/A P36776 38979310
    9619 9cc8:A (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9620 9cc8:B (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9621 9cc8:C (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9622 9cc8:D (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9623 9cc8:E (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9624 9cc8:F (2.66) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9625 9cc9:A (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9626 9cc9:B (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9627 9cc9:C (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9628 9cc9:D (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9629 9cc9:E (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9630 9cc9:F (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9631 9cc9:G (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9632 9cc9:H (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9633 9cc9:I (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9634 9cc9:J (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9635 9cc9:K (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9636 9cc9:L (3.54) BS01 ATP N/A N/A A0A5J6DCT7 39094568
    9637 9ema:A (2.4) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    9638 9ema:A (2.4) BS03 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    9639 9ema:B (2.4) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    9640 9ema:C (2.4) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    9641 9ema:D (2.4) BS02 ATP 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    9642 9ema:E (2.4) BS02 ATP 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    9643 9ema:F (2.4) BS02 ATP 3.6.4.12 GO:0005524 ... Q9Y230 N/A
    9644 9emc:A (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    9645 9emc:B (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    9646 9emc:C (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y265 N/A
    9647 9emc:D (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    9648 9emc:D (3.26) BS02 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    9649 9emc:E (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    9650 9emc:E (3.26) BS02 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    9651 9emc:F (3.26) BS01 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    9652 9emc:F (3.26) BS02 ATP 3.6.4.12 GO:0000492 ... Q9Y230 N/A
    9653 9fmd:7 (3.3) BS01 ATP N/A GO:0000184 ... P38919 38925148
    9654 9fp6:A (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    9655 9fp6:B (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    9656 9fp6:C (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    9657 9fp6:D (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    9658 9fp6:E (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    9659 9fp6:F (2.9) BS01 ATP N/A GO:0006952 ... A0A0S3ANR1 N/A
    9660 9ik1:A (2.61) BS02 ATP N/A N/A P56373 39102524
    9661 9ik1:B (2.61) BS02 ATP N/A N/A P56373 39102524
    9662 9ik1:C (2.61) BS01 ATP N/A N/A P56373 39102524
    9663 9ja1:A (2.98) BS06 ATP N/A N/A P04050 N/A
    9664 9ja1:B (2.98) BS04 ATP N/A N/A P08518 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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