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BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 2vhq:C (2.15) BS01 ATP ? GO:0005524 ... Q94M05 18057007
    802 2vht:A (3.0) BS01 ATP ? GO:0005524 ... Q94M05 18057007
    803 2vht:A (3.0) BS02 ATP ? GO:0005524 ... Q94M05 18057007
    804 2vht:B (3.0) BS01 ATP ? GO:0005524 ... Q94M05 18057007
    805 2vht:B (3.0) BS02 ATP ? GO:0005524 ... Q94M05 18057007
    806 2vht:C (3.0) BS01 ATP ? GO:0005524 ... Q94M05 18057007
    807 2vt3:A (2.0) BS01 ATP ? GO:0003677 ... O05521 18485070 PDBbind: -logKd/Ki=4.15, Kd=0.07mM
    808 2vt3:B (2.0) BS01 ATP ? GO:0003677 ... O05521 18485070 PDBbind: -logKd/Ki=4.15, Kd=0.07mM
    809 2vyp:A (2.35) BS01 ATP 3.6.4.- GO:0000287 ... P68135 19035596
    810 2vyp:B (2.35) BS03 ATP 3.6.4.- GO:0000287 ... P68135 19035596
    811 2w00:A (2.6) BS01 ATP 3.1.21.3 GO:0003677 ... P10486 19079266
    812 2w00:B (2.6) BS01 ATP 3.1.21.3 GO:0003677 ... P10486 19079266
    813 2w02:A (2.2) BS01 ATP ? GO:0005524 ... Q93AT8 19182782
    814 2w02:B (2.2) BS02 ATP ? GO:0005524 ... Q93AT8 19182782
    815 2w5g:A (1.7) BS01 ATP 4.6.1.18 GO:0003676 ... P61823 19191310 MOAD: Ki=0.86uM
    PDBbind: -logKd/Ki=6.07, Ki=860nM
    816 2w5g:B (1.7) BS01 ATP 4.6.1.18 GO:0003676 ... P61823 19191310 MOAD: Ki=0.86uM
    817 2w5i:A (2.4) BS01 ATP 4.6.1.18 GO:0003676 ... P61823 19191310 MOAD: Ki=0.86uM
    PDBbind: -logKd/Ki=4.54, Ki=29uM
    818 2w5i:B (2.4) BS01 ATP 4.6.1.18 GO:0003676 ... P61823 19191310 MOAD: Ki=0.86uM
    819 2wpd:A (3.432) BS01 ATP ? GO:0005524 ... P07251 20610387
    820 2wpd:B (3.432) BS01 ATP ? GO:0005524 ... P07251 20610387
    821 2wpd:C (3.432) BS01 ATP ? GO:0005524 ... P07251 20610387
    822 2x0q:A (1.96) BS01 ATP ? GO:0005524 ... Q7W557 N/A
    823 2x15:A (2.1) BS03 ATP 2.7.2.3 GO:0004618 ... P00558 N/A
    824 2x3j:A (2.0) BS01 ATP ? GO:0005524 ... Q93AT8 21835184
    825 2x3j:B (2.0) BS01 ATP ? GO:0005524 ... Q93AT8 21835184
    826 2xbp:A (1.2) BS01 ATP ? GO:0000166 ... P0A3F4 20399792 MOAD: Kd=9.6uM
    PDBbind: -logKd/Ki=5.02, Kd=9.6uM
    827 2xcw:A (1.9) BS01 ATP 2.7.1.77
    3.1.3.5
    3.1.3.99
    GO:0000255 ... P49902 21396942
    828 2xjd:A (2.0) BS01 ATP 2.7.1.77
    3.1.3.5
    3.1.3.99
    GO:0000255 ... P49902 21396942
    829 2xje:A (2.3) BS02 ATP 2.7.1.77
    3.1.3.5
    3.1.3.99
    GO:0000255 ... P49902 21396942
    830 2xsz:A (3.0) BS01 ATP 3.6.4.12 GO:0005524 ... Q9Y265 21933716
    831 2xsz:B (3.0) BS01 ATP 3.6.4.12 GO:0005524 ... Q9Y265 21933716
    832 2xsz:C (3.0) BS01 ATP 3.6.4.12 GO:0005524 ... Q9Y265 21933716
    833 2xsz:D (3.0) BS01 ATP 3.6.4.12 GO:0005524 ... Q9Y230 21933716
    834 2xsz:E (3.0) BS01 ATP 3.6.4.12 GO:0005524 ... Q9Y230 21933716
    835 2xsz:F (3.0) BS01 ATP 3.6.4.12 GO:0005524 ... Q9Y230 21933716
    836 2xti:B (2.4) BS01 ATP N/A GO:0000166 ... N/A 21134380
    837 2xul:A (2.2) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    838 2xul:A (2.2) BS03 ATP ? GO:0000166 ... P0A3F4 21041661
    839 2xul:B (2.2) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    840 2xul:B (2.2) BS02 ATP ? GO:0000166 ... P0A3F4 21041661
    841 2xul:C (2.2) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    842 2xul:C (2.2) BS02 ATP ? GO:0000166 ... P0A3F4 21041661
    843 2xul:D (2.2) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    844 2xul:D (2.2) BS03 ATP ? GO:0000166 ... P0A3F4 21041661
    845 2xul:E (2.2) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    846 2xul:E (2.2) BS02 ATP ? GO:0000166 ... P0A3F4 21041661
    847 2xul:F (2.2) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    848 2xul:F (2.2) BS02 ATP ? GO:0000166 ... P0A3F4 21041661
    849 2xzw:A (1.95) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    850 2xzw:A (1.95) BS03 ATP ? GO:0000166 ... P0A3F4 21041661
    851 2xzw:B (1.95) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    852 2xzw:B (1.95) BS02 ATP ? GO:0000166 ... P0A3F4 21041661
    853 2xzw:C (1.95) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    854 2xzw:C (1.95) BS02 ATP ? GO:0000166 ... P0A3F4 21041661
    855 2xzw:D (1.95) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    856 2xzw:D (1.95) BS02 ATP ? GO:0000166 ... P0A3F4 21041661
    857 2xzw:E (1.95) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    858 2xzw:E (1.95) BS02 ATP ? GO:0000166 ... P0A3F4 21041661
    859 2xzw:F (1.95) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    860 2xzw:F (1.95) BS02 ATP ? GO:0000166 ... P0A3F4 21041661
    861 2xzw:G (1.95) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    862 2xzw:G (1.95) BS02 ATP ? GO:0000166 ... P0A3F4 21041661
    863 2xzw:H (1.95) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    864 2xzw:H (1.95) BS02 ATP ? GO:0000166 ... P0A3F4 21041661
    865 2xzw:I (1.95) BS01 ATP ? GO:0000166 ... P0A3F4 21041661
    866 2xzw:I (1.95) BS02 ATP ? GO:0000166 ... P0A3F4 21041661
    867 2y27:A (1.6) BS01 ATP 6.2.1.30 GO:0005524 ... B4E7B5 21388965
    868 2y27:B (1.6) BS01 ATP 6.2.1.30 GO:0005524 ... B4E7B5 21388965
    869 2y4i:B (3.46) BS01 ATP 2.7.11.1 GO:0004672 ... Q6VAB6 21441910
    870 2y4i:C (3.46) BS01 ATP 2.7.12.2 GO:0000165 ... P29678 21441910
    871 2yaa:A (2.3) BS01 ATP 2.7.11.1 GO:0004672 ... Q8VDF3 21497605
    872 2yaa:B (2.3) BS01 ATP 2.7.11.1 GO:0004672 ... Q8VDF3 21497605
    873 2ych:A (2.2) BS02 ATP ? GO:0005524 ... Q72IW8 21596754 PDBbind: -logKd/Ki=3.00, Kd<1mM
    874 2yj4:B (2.4) BS01 ATP 3.6.3.10 GO:0000166 ... Q97UU7 N/A
    875 2yj5:B (2.4) BS01 ATP 3.6.3.10 GO:0000166 ... Q97UU7 N/A
    876 2yje:A (3.1) BS02 ATP 3.6.4.- GO:0000287 ... P68135 21673315
    877 2yje:B (3.1) BS01 ATP 3.6.4.- GO:0000287 ... P68135 21673315
    878 2yje:C (3.1) BS02 ATP 3.6.4.- GO:0000287 ... P68135 21673315
    879 2yjf:A (3.5) BS02 ATP 3.6.4.- GO:0000287 ... P68135 21673315
    880 2yjf:B (3.5) BS01 ATP 3.6.4.- GO:0000287 ... P68135 21673315
    881 2yjf:C (3.5) BS02 ATP 3.6.4.- GO:0000287 ... P68135 21673315
    882 2yjf:D (3.5) BS01 ATP 3.6.4.- GO:0000287 ... P68135 21673315
    883 2yjf:E (3.5) BS01 ATP 3.6.4.- GO:0000287 ... P68135 21673315
    884 2yw2:A (1.8) BS02 ATP 6.3.4.13 GO:0003824 ... O66949 20716513
    885 2yw2:B (1.8) BS02 ATP 6.3.4.13 GO:0003824 ... O66949 20716513
    886 2yww:A (2.0) BS02 ATP ? GO:0006207 ... Q58801 N/A
    887 2yww:A (2.0) BS03 ATP ? GO:0006207 ... Q58801 N/A
    888 2yww:A (2.0) BS04 ATP ? GO:0006207 ... Q58801 N/A
    889 2yww:B (2.0) BS01 ATP ? GO:0006207 ... Q58801 N/A
    890 2yww:B (2.0) BS03 ATP ? GO:0006207 ... Q58801 N/A
    891 2yww:B (2.0) BS04 ATP ? GO:0006207 ... Q58801 N/A
    892 2yxu:A (2.2) BS01 ATP 2.7.1.35 GO:0000287 ... O00764 17766369
    893 2yxu:B (2.2) BS01 ATP 2.7.1.35 GO:0000287 ... O00764 17766369
    894 2z02:A (2.03) BS01 ATP 6.3.2.6 GO:0004639 ... Q58987 N/A
    895 2z02:B (2.03) BS01 ATP 6.3.2.6 GO:0004639 ... Q58987 N/A
    896 2z08:A (1.55) BS01 ATP ? GO:0005524 ... Q5SJV7 N/A
    897 2z1u:A (2.0) BS02 ATP ? GO:0005524 ... Q72F88 17706667
    898 2zan:A (3.0) BS02 ATP 3.6.4.6 GO:0000922 ... P46467 18796009
    899 2zdq:A (2.3) BS03 ATP 6.3.2.4 GO:0003824 ... Q5SHZ3 N/A
    900 2zdq:B (2.3) BS03 ATP 6.3.2.4 GO:0003824 ... Q5SHZ3 N/A
    901 2zh6:A (2.5) BS03 ATP 2.7.7.72 GO:0000049 ... O28126 18583961
    902 2zhz:A (1.8) BS02 ATP 2.5.1.- GO:0005524 ... Q2SZ09 18473361
    903 2zhz:B (1.8) BS01 ATP 2.5.1.- GO:0005524 ... Q2SZ09 18473361
    904 2zhz:B (1.8) BS02 ATP 2.5.1.- GO:0005524 ... Q2SZ09 18473361
    905 2zhz:C (1.8) BS01 ATP 2.5.1.- GO:0005524 ... Q2SZ09 18473361
    906 2zsf:A (2.8) BS01 ATP 2.7.1.33 GO:0004594 ... P9WPA7 19307712
    907 2zt7:A (2.7) BS02 ATP 2.7.7.-
    6.1.1.14
    GO:0000166 ... P41250 N/A
    908 3a5m:C (2.4) BS01 ATP 3.6.4.- GO:0000281 ... P07830 20946985
    909 3a5n:C (2.36) BS01 ATP 3.6.4.- GO:0000281 ... P07830 20946985
    910 3a5o:C (2.4) BS01 ATP 3.6.4.- GO:0000281 ... P07830 20946985
    911 3a7h:A (1.96) BS01 ATP 2.7.11.1 GO:0004672 ... Q9Y6E0 20124694
    912 3a7h:B (1.96) BS01 ATP 2.7.11.1 GO:0004672 ... Q9Y6E0 20124694
    913 3a8t:A (2.37) BS01 ATP 2.5.1.112
    2.5.1.27
    GO:0005524 ... Q5GHF7 20007608 MOAD: Ka=764000M^-1
    914 3a8w:A (2.1) BS01 ATP 2.7.11.13 GO:0004672 ... P41743 20445233
    915 3a8w:B (2.1) BS01 ATP 2.7.11.13 GO:0004672 ... P41743 20445233
    916 3ab8:A (1.7) BS01 ATP ? GO:0005524 ... Q5SLE3 N/A
    917 3ab8:A (1.7) BS02 ATP ? GO:0005524 ... Q5SLE3 N/A
    918 3ab8:B (1.7) BS01 ATP ? GO:0005524 ... Q5SLE3 N/A
    919 3ab8:B (1.7) BS02 ATP ? GO:0005524 ... Q5SLE3 N/A
    920 3am1:A (2.4) BS02 ATP 2.7.1.164 GO:0001717 ... Q58933 20870747
    921 3amt:A (2.9) BS02 ATP 6.3.4.22 GO:0002101 ... O28025 22002223
    922 3aqn:A (3.3) BS01 ATP N/A GO:0003723 ... N/A 21300291
    923 3aqn:B (3.3) BS01 ATP N/A GO:0003723 ... N/A 21300291
    924 3ar4:A (2.15) BS01 ATP 7.2.2.10 GO:0000166 ... P04191 21239683 MOAD: Kd=156nM
    925 3att:A (2.0) BS05 ATP 2.7.1.- GO:0005524 ... P9WI99 21905120
    926 3b2q:A (2.1) BS01 ATP 3.6.3.14 GO:0005524 ... Q60187 19003877 PDBbind: -logKd/Ki=4.55, Kd=28uM
    927 3b2q:B (2.1) BS01 ATP 3.6.3.14 GO:0005524 ... Q60187 19003877 PDBbind: -logKd/Ki=4.55, Kd=28uM
    928 3bg5:A (2.8) BS03 ATP 6.4.1.1 GO:0003824 ... A0A0H3JRU9 18297087
    929 3bg5:C (2.8) BS03 ATP 6.4.1.1 GO:0003824 ... A0A0H3JRU9 18297087
    930 3bju:A (2.31) BS03 ATP 2.7.7.-
    6.1.1.6
    GO:0000166 ... Q15046 18272479
    931 3bju:B (2.31) BS03 ATP 2.7.7.-
    6.1.1.6
    GO:0000166 ... Q15046 18272479
    932 3bju:C (2.31) BS03 ATP 2.7.7.-
    6.1.1.6
    GO:0000166 ... Q15046 18272479
    933 3bju:D (2.31) BS03 ATP 2.7.7.-
    6.1.1.6
    GO:0000166 ... Q15046 18272479
    934 3blq:A (2.9) BS01 ATP 2.7.11.22
    2.7.11.23
    GO:0004672 ... P50750 18566585
    935 3bu5:A (2.1) BS03 ATP 2.7.10.1 GO:0004672 ... P06213 18278056
    936 3buz:B (2.81) BS01 ATP 3.6.4.- GO:0000287 ... P68135 18490658
    937 3c16:A (2.87) BS04 ATP 4.6.1.1 GO:0009190 ... P30803 19243146
    938 3c4w:A (2.7) BS01 ATP 2.7.11.14 GO:0001750 ... P28327 18339619
    939 3c4w:B (2.7) BS02 ATP 2.7.11.14 GO:0001750 ... P28327 18339619
    940 3c4x:A (2.9) BS01 ATP 2.7.11.14 GO:0001750 ... P28327 18339619
    941 3c4x:B (2.9) BS02 ATP 2.7.11.14 GO:0001750 ... P28327 18339619
    942 3c5e:A (1.6) BS02 ATP 6.2.1.2
    6.2.1.25
    GO:0004321 ... Q08AH3 19345228
    943 3c9r:A (2.3) BS03 ATP 2.7.4.16 GO:0000287 ... O67883 18311927
    944 3c9r:A (2.3) BS04 ATP 2.7.4.16 GO:0000287 ... O67883 18311927
    945 3c9r:B (2.3) BS01 ATP 2.7.4.16 GO:0000287 ... O67883 18311927
    946 3c9r:B (2.3) BS04 ATP 2.7.4.16 GO:0000287 ... O67883 18311927
    947 3chw:A (2.3) BS01 ATP 3.6.4.- GO:0000281 ... P07830 18689676
    948 3ci1:A (1.9) BS02 ATP 2.5.1.17 GO:0005515 ... Q50EJ2 18452306
    949 3ci4:A (2.0) BS01 ATP 2.5.1.17 GO:0005515 ... Q50EJ2 18452306
    950 3ci5:A (1.7) BS01 ATP 3.6.4.- GO:0000281 ... P07830 18689676
    951 3cip:A (1.6) BS01 ATP 3.6.4.- GO:0000281 ... P07830 18689676
    952 3cis:A (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    953 3cis:A (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    954 3cis:B (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    955 3cis:B (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    956 3cis:C (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    957 3cis:C (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    958 3cis:D (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    959 3cis:D (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    960 3cis:E (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    961 3cis:E (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    962 3cis:F (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    963 3cis:F (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    964 3cis:G (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    965 3cis:G (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    966 3cis:H (2.9) BS01 ATP ? GO:0001666 ... P9WFD7 N/A
    967 3cis:H (2.9) BS02 ATP ? GO:0001666 ... P9WFD7 N/A
    968 3cjb:A (3.21) BS01 ATP 3.6.4.- GO:0000287 ... P68135 19015515
    969 3cjc:A (3.9) BS02 ATP 3.6.4.- GO:0000287 ... P68135 19015515
    970 3cqd:A (1.98) BS01 ATP 2.7.1.11 GO:0000287 ... P06999 18762190
    971 3cqd:A (1.98) BS02 ATP 2.7.1.11 GO:0000287 ... P06999 18762190
    972 3cqd:A (1.98) BS03 ATP 2.7.1.11 GO:0000287 ... P06999 18762190
    973 3cqd:B (1.98) BS01 ATP 2.7.1.11 GO:0000287 ... P06999 18762190
    974 3cqd:B (1.98) BS02 ATP 2.7.1.11 GO:0000287 ... P06999 18762190
    975 3cqd:B (1.98) BS03 ATP 2.7.1.11 GO:0000287 ... P06999 18762190
    976 3crc:A (3.0) BS01 ATP 3.6.1.8 GO:0005515 ... P0AEY3 18353782
    977 3crc:B (3.0) BS02 ATP 3.6.1.8 GO:0005515 ... P0AEY3 18353782
    978 3cyi:A (1.8) BS01 ATP 1.8.98.2 GO:0032542 ... Q9BYN0 18579529
    979 3d2e:A (2.35) BS01 ATP ? GO:0005524 ... P32589 18555782 PDBbind: -logKd/Ki=6.42, Kd=0.38uM
    980 3d2e:C (2.35) BS01 ATP ? GO:0005524 ... P32589 18555782
    981 3d2f:A (2.3) BS02 ATP ? GO:0005524 ... P32589 18555782
    982 3d2f:C (2.3) BS02 ATP ? GO:0005524 ... P32589 18555782
    983 3daw:A (2.55) BS01 ATP 3.6.4.- GO:0000287 ... P68135 18625842
    984 3dgl:A (1.8) BS02 ATP N/A N/A N/A 19522480 MOAD: Kd=250nM
    PDBbind: -logKd/Ki=6.60, Kd=250nM
    985 3dgo:A (2.5) BS02 ATP N/A N/A N/A 19522480 MOAD: Kd=180nM
    PDBbind: -logKd/Ki=6.74, Kd=180nM
    986 3dkc:A (1.52) BS02 ATP 2.7.10.1 GO:0004672 ... P08581 19934279
    987 3dnt:A (1.66) BS01 ATP 2.7.11.1 GO:0000287 ... P23874 19150849 MOAD: Kd=18uM
    PDBbind: -logKd/Ki=4.74, Kd=18uM
    988 3dnt:B (1.66) BS01 ATP 2.7.11.1 GO:0000287 ... P23874 19150849 MOAD: Kd=18uM
    989 3dv3:A (2.3) BS02 ATP 2.7.12.2 GO:0004672 ... Q02750 19019675
    990 3dvl:A (2.8) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    991 3dvl:A (2.8) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    992 3dvl:A (2.8) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    993 3dvl:A (2.8) BS04 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    994 3dvl:B (2.8) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    995 3dvl:B (2.8) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    996 3dvl:B (2.8) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    997 3dvl:B (2.8) BS04 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    998 3dvl:C (2.8) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    999 3dvl:C (2.8) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A
    1000 3dvl:C (2.8) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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