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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9401 8vk4:D (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    9402 8vk4:D (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    9403 8vpn:A (2.7) BS02 ATP N/A N/A J3QSS1 39143061
    9404 8vpn:B (2.7) BS01 ATP N/A N/A J3QSS1 39143061
    9405 8vw2:A (1.95) BS04 ATP 6.3.2.9 GO:0005515 ... P14900 N/A
    9406 8vxy:B (3.19) BS03 ATP ? GO:0003676 ... A0A426EXV0 38464307
    9407 8w2h:A (2.6) BS02 ATP N/A N/A P17858 39183237
    9408 8w2h:A (2.6) BS03 ATP N/A N/A P17858 39183237
    9409 8w2h:A (2.6) BS04 ATP N/A N/A P17858 39183237
    9410 8w2h:B (2.6) BS03 ATP N/A N/A P17858 39183237
    9411 8w2h:B (2.6) BS04 ATP N/A N/A P17858 39183237
    9412 8w2h:B (2.6) BS05 ATP N/A N/A P17858 39183237
    9413 8w2h:C (2.6) BS02 ATP N/A N/A P17858 39183237
    9414 8w2h:C (2.6) BS03 ATP N/A N/A P17858 39183237
    9415 8w2h:C (2.6) BS04 ATP N/A N/A P17858 39183237
    9416 8w2h:D (2.6) BS03 ATP N/A N/A P17858 39183237
    9417 8w2h:D (2.6) BS04 ATP N/A N/A P17858 39183237
    9418 8w2h:D (2.6) BS05 ATP N/A N/A P17858 39183237
    9419 8w2j:A (3.1) BS02 ATP N/A N/A P17858 39183237
    9420 8w2j:A (3.1) BS03 ATP N/A N/A P17858 39183237
    9421 8w2j:A (3.1) BS04 ATP N/A N/A P17858 39183237
    9422 8w2j:B (3.1) BS03 ATP N/A N/A P17858 39183237
    9423 8w2j:B (3.1) BS04 ATP N/A N/A P17858 39183237
    9424 8w2j:B (3.1) BS05 ATP N/A N/A P17858 39183237
    9425 8w2j:C (3.1) BS02 ATP N/A N/A P17858 39183237
    9426 8w2j:C (3.1) BS03 ATP N/A N/A P17858 39183237
    9427 8w2j:C (3.1) BS04 ATP N/A N/A P17858 39183237
    9428 8w2j:D (3.1) BS03 ATP N/A N/A P17858 39183237
    9429 8w2j:D (3.1) BS04 ATP N/A N/A P17858 39183237
    9430 8w2j:D (3.1) BS05 ATP N/A N/A P17858 39183237
    9431 8w2j:E (3.1) BS02 ATP N/A N/A P17858 39183237
    9432 8w2j:E (3.1) BS03 ATP N/A N/A P17858 39183237
    9433 8w2j:E (3.1) BS04 ATP N/A N/A P17858 39183237
    9434 8w2j:F (3.1) BS03 ATP N/A N/A P17858 39183237
    9435 8w2j:F (3.1) BS04 ATP N/A N/A P17858 39183237
    9436 8w2j:F (3.1) BS05 ATP N/A N/A P17858 39183237
    9437 8w2j:G (3.1) BS02 ATP N/A N/A P17858 39183237
    9438 8w2j:G (3.1) BS03 ATP N/A N/A P17858 39183237
    9439 8w2j:G (3.1) BS04 ATP N/A N/A P17858 39183237
    9440 8w2j:H (3.1) BS03 ATP N/A N/A P17858 39183237
    9441 8w2j:H (3.1) BS04 ATP N/A N/A P17858 39183237
    9442 8w2j:H (3.1) BS05 ATP N/A N/A P17858 39183237
    9443 8w6j:B (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    9444 8w6j:B (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    9445 8w6j:D (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    9446 8w6j:D (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    9447 8w9m:C (3.1) BS01 ATP ? GO:0005524 ... Q8YZ76 38457518
    9448 8w9m:C (3.1) BS03 ATP ? GO:0005524 ... Q8YZ76 38457518
    9449 8w9m:D (3.1) BS01 ATP ? GO:0005524 ... Q8YZ75 38457518
    9450 8w9m:D (3.1) BS02 ATP ? GO:0005524 ... Q8YZ75 38457518
    9451 8wam:A (3.23) BS01 ATP ? GO:0005524 ... Q84TH5 38050355
    9452 8wam:A (3.23) BS03 ATP ? GO:0005524 ... Q84TH5 38050355
    9453 8wam:B (3.23) BS01 ATP ? GO:0005524 ... Q84TH5 38050355
    9454 8wam:B (3.23) BS02 ATP ? GO:0005524 ... Q84TH5 38050355
    9455 8wdb:D (2.86) BS01 ATP N/A N/A I6Y482 N/A
    9456 8wdb:D (2.86) BS02 ATP N/A N/A I6Y482 N/A
    9457 8wih:A (2.44) BS01 ATP N/A N/A N/A 39014102
    9458 8wih:B (2.44) BS01 ATP N/A N/A N/A 39014102
    9459 8wp0:A (3.4) BS01 ATP ? GO:0005515 ... Q9LJX0 38513023
    9460 8wp0:A (3.4) BS02 ATP ? GO:0005515 ... Q9LJX0 38513023
    9461 8wv8:A (2.93) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    9462 8wv8:A (2.93) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    9463 8wv8:B (2.93) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    9464 8wv8:B (2.93) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    9465 8wv8:B (2.93) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    9466 8wv8:B (2.93) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    9467 8wve:A (2.729) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    9468 8wve:A (2.729) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    9469 8wve:B (2.729) BS01 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    9470 8wve:B (2.729) BS02 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    9471 8wve:B (2.729) BS03 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    9472 8wve:B (2.729) BS04 ATP 2.7.11.1
    3.6.4.-    		 GO:0000287 ... Q79PF4 38803331
    9473 8wy4:A (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9474 8wy4:A (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9475 8wy4:B (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9476 8wy4:B (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9477 8wy4:C (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9478 8wy4:C (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9479 8wy4:D (2.81) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9480 8wy4:D (2.81) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9481 8x15:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    9482 8x15:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    9483 8x19:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    9484 8x19:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    9485 8x1c:K (3.2) BS01 ATP ? GO:0000786 ... Q9GZN1 38331872
    9486 8x1c:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    9487 8x1c:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    9488 8x3v:A (2.9) BS01 ATP N/A N/A P03304 N/A
    9489 8x3v:B (2.9) BS01 ATP N/A N/A P03304 N/A
    9490 8x5i:A (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9491 8x5i:A (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9492 8x5i:B (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9493 8x5i:B (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9494 8x5i:C (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9495 8x5i:D (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9496 8x5i:D (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9497 8x5n:A (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9498 8x5n:A (2.8) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9499 8x5n:B (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9500 8x5n:C (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9501 8x5n:D (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9502 8x5n:D (2.8) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    9503 8x61:A (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    9504 8x61:A (3.05) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    9505 8x61:B (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    9506 8x61:B (3.05) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    9507 8x7u:A (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    9508 8x7u:B (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    9509 8x7u:C (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    9510 8x7u:C (3.57) BS02 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    9511 8x7u:D (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    9512 8x7u:D (3.57) BS02 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    9513 8x7u:E (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    9514 8x7u:E (3.57) BS02 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    9515 8x7u:F (3.57) BS01 ATP 3.6.4.12 GO:0003677 ... Q5JIT1 N/A
    9516 8xfc:D (3.89) BS01 ATP N/A N/A I6Y482 N/A
    9517 8xfc:D (3.89) BS02 ATP N/A N/A I6Y482 N/A
    9518 8xku:A (3.2) BS02 ATP N/A N/A F4KF14 39197452
    9519 8xku:B (3.2) BS03 ATP N/A N/A Q9SAJ3 39197452
    9520 8xku:F (3.2) BS01 ATP N/A N/A A8MPR5 39197452
    9521 8xmh:A (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    9522 8xmh:B (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    9523 8xmh:C (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    9524 8xmh:D (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    9525 8xmh:E (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    9526 8xmh:F (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    9527 8xmh:G (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    9528 8xmh:H (2.85) BS01 ATP ? GO:0005515 ... O32080 38719864
    9529 8xmi:A (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    9530 8xmi:B (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    9531 8xmi:C (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    9532 8xmi:D (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    9533 8xmi:E (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    9534 8xmi:F (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    9535 8xmi:G (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    9536 8xmi:H (3.0) BS01 ATP ? GO:0005515 ... O32080 38719864
    9537 8xon:O (1.96) BS03 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9538 8xon:P (1.96) BS03 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9539 8xon:Q (1.96) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9540 8xon:Q (1.96) BS04 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9541 8xon:R (1.96) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9542 8xon:R (1.96) BS03 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9543 8xon:R (1.96) BS04 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9544 8xon:S (1.96) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9545 8xon:S (1.96) BS03 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9546 8xon:T (1.96) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9547 8xoo:O (1.84) BS04 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9548 8xoo:P (1.84) BS03 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9549 8xoo:Q (1.84) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9550 8xoo:Q (1.84) BS04 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9551 8xoo:R (1.84) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9552 8xoo:R (1.84) BS03 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9553 8xoo:S (1.84) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9554 8xoo:T (1.84) BS02 ATP ? GO:0005524 ... A0A6G5RIJ6 38501868
    9555 8xvb:A (3.4) BS02 ATP N/A N/A P03763 39085263
    9556 8xvb:A (3.4) BS03 ATP N/A N/A P03763 39085263
    9557 8xvb:B (3.4) BS02 ATP N/A N/A P03763 39085263
    9558 8xvb:B (3.4) BS03 ATP N/A N/A P03763 39085263
    9559 8xvb:C (3.4) BS03 ATP N/A N/A P03763 39085263
    9560 8xvb:D (3.4) BS03 ATP N/A N/A P03763 39085263
    9561 8xvb:D (3.4) BS04 ATP N/A N/A P03763 39085263
    9562 8xvb:E (3.4) BS02 ATP N/A N/A P03763 39085263
    9563 8xvb:F (3.4) BS03 ATP N/A N/A P03763 39085263
    9564 8xvb:G (3.4) BS03 ATP N/A N/A P03763 39085263
    9565 8xvb:G (3.4) BS04 ATP N/A N/A P03763 39085263
    9566 8xvb:H (3.4) BS03 ATP N/A N/A P03763 39085263
    9567 8xw6:A (1.99) BS03 ATP N/A GO:0004743 ... Q8DQ84 39009072
    9568 8y2h:B (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    9569 8y2h:F (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    9570 8y2h:G (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    9571 8y2h:H (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    9572 8y3x:A (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    9573 8y3x:A (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    9574 8y3x:B (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    9575 8y3x:B (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    9576 8yik:A (1.3) BS01 ATP N/A N/A A0A0C5B080 39166497
    9577 8z0f:A (3.27) BS01 ATP N/A N/A P28288 N/A
    9578 8z0f:A (3.27) BS02 ATP N/A N/A P28288 N/A
    9579 8z0f:B (3.27) BS01 ATP N/A N/A P28288 N/A
    9580 8z0f:B (3.27) BS02 ATP N/A N/A P28288 N/A
    9581 9ash:A (2.58) BS04 ATP N/A N/A L0CEJ3 38989619
    9582 9asi:A (2.79) BS03 ATP N/A N/A L0CEJ3 38989619
    9583 9asi:A (2.79) BS05 ATP N/A N/A L0CEJ3 38989619
    9584 9azp:I (3.79) BS01 ATP 3.6.4.- GO:0000287 ... P68135 38843827
    9585 9b5c:A (2.5) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9586 9b5d:A (2.8) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9587 9b5e:A (2.81) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9588 9b5f:A (2.78) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9589 9b5g:A (2.67) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9590 9b5k:A (3.16) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9591 9b5m:A (2.79) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9592 9b5n:A (3.12) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9593 9b5o:A (3.19) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9594 9b5p:A (3.08) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9595 9b5q:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9596 9b5r:A (2.95) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9597 9b5s:A (2.96) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9598 9b5t:A (3.16) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9599 9b5u:A (3.67) BS01 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    9600 9b5v:A (3.94) BS02 ATP 6.2.1.45 GO:0000287 ... O94609 39143218
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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