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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9201 8u8o:E (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9202 8u8o:F (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9203 8u8o:F (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9204 8u8o:G (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9205 8u8o:G (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9206 8u8o:H (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9207 8u8o:H (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9208 8u96:A (1.5) BS01 ATP 2.7.1.24 GO:0004140 ... A0A0H3FR62 N/A
    9209 8u9r:A (3.34) BS06 ATP N/A N/A P04050 39190355
    9210 8u9r:B (3.34) BS03 ATP N/A N/A N/A 39190355
    9211 8u9x:A (3.05) BS07 ATP N/A N/A P04050 39190355
    9212 8u9x:B (3.05) BS03 ATP N/A N/A N/A 39190355
    9213 8ubr:A (2.7) BS02 ATP 5.6.1.6 GO:0005254 ... P13569 38422021
    9214 8ubr:A (2.7) BS03 ATP 5.6.1.6 GO:0005254 ... P13569 38422021
    9215 8uch:A (2.14) BS01 ATP 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    9216 8ukr:B (3.78) BS04 ATP 2.7.7.6 GO:0000428 ... P08518 38393762
    9217 8uq2:A (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9218 8uq2:A (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9219 8uq2:B (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9220 8uq2:B (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9221 8uq2:C (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9222 8uq2:C (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9223 8uq2:D (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9224 8uq2:D (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9225 8uq3:A (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9226 8uq3:A (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9227 8uq3:B (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9228 8uq3:B (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9229 8uq3:C (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9230 8uq3:C (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9231 8uq3:D (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9232 8uq3:D (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9233 8uq4:A (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9234 8uq4:A (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9235 8uq4:B (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9236 8uq4:B (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9237 8uq4:C (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9238 8uq4:C (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9239 8uq4:D (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9240 8uq4:D (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9241 8uq5:A (3.96) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9242 8uq5:A (3.96) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9243 8uq5:B (3.96) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9244 8uq5:B (3.96) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9245 8uq5:C (3.96) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9246 8uq5:C (3.96) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9247 8uq5:D (3.96) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9248 8uq5:D (3.96) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9249 8uxc:A (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9250 8uxc:A (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9251 8uxc:B (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9252 8uxc:B (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9253 8uxc:C (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9254 8uxc:C (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9255 8uxc:D (2.86) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9256 8uxc:D (2.86) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9257 8uxe:A (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9258 8uxe:A (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9259 8uxe:B (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9260 8uxe:B (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9261 8uxe:C (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9262 8uxe:C (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9263 8uxe:D (3.53) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9264 8uxe:D (3.53) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9265 8uxf:A (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9266 8uxf:A (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    9267 8uxf:B (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9268 8uxf:B (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    9269 8uxf:C (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9270 8uxf:C (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    9271 8uxf:D (3.13) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9272 8uxf:D (3.13) BS03 ATP ? GO:0001666 ... Q92736 N/A
    9273 8uxg:A (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9274 8uxg:A (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9275 8uxg:B (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9276 8uxg:B (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9277 8uxg:C (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9278 8uxg:C (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9279 8uxg:D (3.08) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9280 8uxg:D (3.08) BS03 ATP ? GO:0001666 ... Q92736 39278969
    9281 8uxh:A (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9282 8uxh:A (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    9283 8uxh:B (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9284 8uxh:B (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    9285 8uxh:C (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9286 8uxh:C (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    9287 8uxh:D (3.52) BS02 ATP ? GO:0001666 ... Q92736 39278969
    9288 8uxh:D (3.52) BS04 ATP ? GO:0001666 ... Q92736 39278969
    9289 8uxi:A (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9290 8uxi:A (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    9291 8uxi:B (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9292 8uxi:B (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    9293 8uxi:C (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9294 8uxi:C (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    9295 8uxi:D (3.29) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9296 8uxi:D (3.29) BS04 ATP ? GO:0001666 ... Q92736 N/A
    9297 8uxl:A (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9298 8uxl:A (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    9299 8uxl:B (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9300 8uxl:B (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    9301 8uxl:C (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9302 8uxl:C (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    9303 8uxl:D (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9304 8uxl:D (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    9305 8uxm:A (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9306 8uxm:B (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9307 8uxm:C (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9308 8uxm:D (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    9309 8uxw:B (2.7) BS01 ATP ? GO:0000147 ... Q9UUJ1 38448439
    9310 8uxx:B (3.2) BS01 ATP ? GO:0000147 ... Q9UUJ1 38448439
    9311 8v45:A (3.63) BS01 ATP N/A N/A N/A 39112702
    9312 8v45:A (3.63) BS02 ATP N/A N/A N/A 39112702
    9313 8v45:B (3.63) BS01 ATP N/A N/A N/A 39112702
    9314 8v45:B (3.63) BS02 ATP N/A N/A N/A 39112702
    9315 8v45:C (3.63) BS01 ATP N/A N/A N/A 39112702
    9316 8v45:C (3.63) BS02 ATP N/A N/A N/A 39112702
    9317 8v45:F (3.63) BS01 ATP N/A N/A N/A 39112702
    9318 8v45:F (3.63) BS02 ATP N/A N/A N/A 39112702
    9319 8v46:A (3.09) BS01 ATP N/A N/A N/A 39112702
    9320 8v46:B (3.09) BS01 ATP N/A N/A N/A 39112702
    9321 8v46:B (3.09) BS02 ATP N/A N/A N/A 39112702
    9322 8v47:A (4.08) BS01 ATP N/A N/A N/A 39112702
    9323 8v47:B (4.08) BS01 ATP N/A N/A N/A 39112702
    9324 8v47:B (4.08) BS02 ATP N/A N/A N/A 39112702
    9325 8v47:C (4.08) BS01 ATP N/A N/A N/A 39112702
    9326 8v47:H (4.08) BS01 ATP N/A N/A N/A 39112702
    9327 8v47:H (4.08) BS02 ATP N/A N/A N/A 39112702
    9328 8v48:A (3.68) BS01 ATP N/A N/A N/A 39112702
    9329 8v48:B (3.68) BS01 ATP N/A N/A N/A 39112702
    9330 8v48:B (3.68) BS02 ATP N/A N/A N/A 39112702
    9331 8v48:C (3.68) BS01 ATP N/A N/A N/A 39112702
    9332 8v48:C (3.68) BS02 ATP N/A N/A N/A 39112702
    9333 8v48:F (3.68) BS01 ATP N/A N/A N/A 39112702
    9334 8v48:F (3.68) BS02 ATP N/A N/A N/A 39112702
    9335 8v48:H (3.68) BS01 ATP N/A N/A N/A 39112702
    9336 8v48:K (3.68) BS01 ATP N/A N/A N/A 39112702
    9337 8v49:A (3.62) BS01 ATP N/A N/A N/A 39112702
    9338 8v49:B (3.62) BS01 ATP N/A N/A N/A 39112702
    9339 8v7z:A (3.4) BS03 ATP N/A GO:0005254 ... P13569 39107303
    9340 8v7z:A (3.4) BS04 ATP N/A GO:0005254 ... P13569 39107303
    9341 8v81:A (3.6) BS01 ATP N/A GO:0005254 ... P13569 39107303
    9342 8v81:A (3.6) BS02 ATP N/A GO:0005254 ... P13569 39107303
    9343 8vhn:A (2.62) BS01 ATP N/A N/A P00452 39164005
    9344 8vhn:A (2.62) BS02 ATP N/A N/A P00452 39164005
    9345 8vhn:A (2.62) BS03 ATP N/A N/A P00452 39164005
    9346 8vhn:A (2.62) BS04 ATP N/A N/A P00452 39164005
    9347 8vhn:B (2.62) BS01 ATP N/A N/A P00452 39164005
    9348 8vhn:B (2.62) BS02 ATP N/A N/A P00452 39164005
    9349 8vhn:B (2.62) BS03 ATP N/A N/A P00452 39164005
    9350 8vhn:B (2.62) BS04 ATP N/A N/A P00452 39164005
    9351 8vhp:A (2.608) BS01 ATP N/A N/A P00452 39164005
    9352 8vhp:A (2.608) BS02 ATP N/A N/A P00452 39164005
    9353 8vhp:A (2.608) BS03 ATP N/A N/A P00452 39164005
    9354 8vhp:A (2.608) BS05 ATP N/A N/A P00452 39164005
    9355 8vhp:B (2.608) BS01 ATP N/A N/A P00452 39164005
    9356 8vhp:B (2.608) BS02 ATP N/A N/A P00452 39164005
    9357 8vhp:B (2.608) BS03 ATP N/A N/A P00452 39164005
    9358 8vhp:B (2.608) BS04 ATP N/A N/A P00452 39164005
    9359 8vhp:C (2.608) BS01 ATP N/A N/A P00452 39164005
    9360 8vhp:C (2.608) BS02 ATP N/A N/A P00452 39164005
    9361 8vhp:C (2.608) BS03 ATP N/A N/A P00452 39164005
    9362 8vhp:C (2.608) BS05 ATP N/A N/A P00452 39164005
    9363 8vhp:D (2.608) BS01 ATP N/A N/A P00452 39164005
    9364 8vhp:D (2.608) BS02 ATP N/A N/A P00452 39164005
    9365 8vhp:D (2.608) BS03 ATP N/A N/A P00452 39164005
    9366 8vhp:D (2.608) BS04 ATP N/A N/A P00452 39164005
    9367 8vhp:E (2.608) BS01 ATP N/A N/A P00452 39164005
    9368 8vhp:E (2.608) BS02 ATP N/A N/A P00452 39164005
    9369 8vhp:E (2.608) BS03 ATP N/A N/A P00452 39164005
    9370 8vhp:E (2.608) BS05 ATP N/A N/A P00452 39164005
    9371 8vhp:F (2.608) BS01 ATP N/A N/A P00452 39164005
    9372 8vhp:F (2.608) BS02 ATP N/A N/A P00452 39164005
    9373 8vhp:F (2.608) BS03 ATP N/A N/A P00452 39164005
    9374 8vhp:F (2.608) BS04 ATP N/A N/A P00452 39164005
    9375 8vhp:G (2.608) BS01 ATP N/A N/A P00452 39164005
    9376 8vhp:G (2.608) BS02 ATP N/A N/A P00452 39164005
    9377 8vhp:G (2.608) BS03 ATP N/A N/A P00452 39164005
    9378 8vhp:G (2.608) BS05 ATP N/A N/A P00452 39164005
    9379 8vhp:H (2.608) BS01 ATP N/A N/A P00452 39164005
    9380 8vhp:H (2.608) BS02 ATP N/A N/A P00452 39164005
    9381 8vhp:H (2.608) BS03 ATP N/A N/A P00452 39164005
    9382 8vhp:H (2.608) BS04 ATP N/A N/A P00452 39164005
    9383 8vhq:A (3.4) BS02 ATP N/A N/A P00452 39164005
    9384 8vhq:B (3.4) BS03 ATP N/A N/A P00452 39164005
    9385 8vhq:C (3.4) BS02 ATP N/A N/A P00452 39164005
    9386 8vhq:D (3.4) BS03 ATP N/A N/A P00452 39164005
    9387 8vjk:A (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    9388 8vjk:A (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    9389 8vjk:B (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    9390 8vjk:B (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    9391 8vjk:C (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    9392 8vjk:C (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    9393 8vjk:D (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    9394 8vjk:D (2.92) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    9395 8vk4:A (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    9396 8vk4:A (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    9397 8vk4:B (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    9398 8vk4:B (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    9399 8vk4:C (3.56) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    9400 8vk4:C (3.56) BS05 ATP ? GO:0002020 ... E9PZQ0 38917010
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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