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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    9001 8rku:K (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    9002 8rku:K (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    9003 8rku:L (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    9004 8rku:L (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    9005 8rku:M (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    9006 8rku:M (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    9007 8rku:N (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    9008 8rku:N (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    9009 8rku:O (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    9010 8rku:O (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    9011 8rku:P (2.3) BS02 ATP N/A N/A A0A8J0PCL3 38834066
    9012 8rku:P (2.3) BS03 ATP N/A N/A A0A8J0PCL3 38834066
    9013 8rku:Q (2.3) BS01 ATP N/A N/A A0A8J0PCL3 38834066
    9014 8ru0:D (3.08) BS01 ATP 3.6.4.- GO:0000287 ... P68135 38603491
    9015 8rv2:D (3.41) BS01 ATP 3.6.4.- GO:0000287 ... P68135 38603491
    9016 8sam:A (2.15) BS01 ATP ? GO:0004672 ... A0A6H0TJ16
    A0A7U1BAR4    		 37901177
    9017 8sam:B (2.15) BS01 ATP ? GO:0004672 ... A0A6H0TJ16
    A0A7U1BAR4    		 37901177
    9018 8shk:C (1.71) BS01 ATP 2.7.7.86 N/A Q8C6L5 38740774
    9019 8shy:C (1.77) BS02 ATP 2.7.7.86 N/A Q8C6L5 38740774
    9020 8sj2:A (2.23) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    9021 8sj2:C (2.23) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    9022 8skt:A (2.69) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    9023 8skt:C (2.69) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    9024 8soa:A (3.32) BS01 ATP 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154    		 GO:0001525 ... O02697 38565696
    9025 8spw:A (3.5) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 38237595
    9026 8spw:B (3.5) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 38237595
    9027 8spw:C (3.5) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 38237595
    9028 8spw:D (3.5) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 38237595
    9029 8spx:A (2.95) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 38237595
    9030 8spx:B (2.95) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 38237595
    9031 8spx:C (2.95) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 38237595
    9032 8spx:D (2.95) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 38237595
    9033 8spx:E (2.95) BS01 ATP 7.1.2.2 GO:0005515 ... P07677 38237595
    9034 8sux:A (2.93) BS01 ATP N/A GO:0006302 ... N/A 38177683
    9035 8sux:A (2.93) BS02 ATP N/A GO:0006302 ... N/A 38177683
    9036 8sux:B (2.93) BS01 ATP N/A GO:0006302 ... N/A 38177683
    9037 8sux:B (2.93) BS02 ATP N/A GO:0006302 ... N/A 38177683
    9038 8sux:C (2.93) BS01 ATP N/A GO:0006302 ... N/A 38177683
    9039 8sux:D (2.93) BS01 ATP N/A GO:0006302 ... N/A 38177683
    9040 8sux:E (2.93) BS01 ATP N/A GO:0006302 ... N/A 38177683
    9041 8sux:F (2.93) BS01 ATP N/A GO:0006302 ... N/A 38177683
    9042 8swk:A (4.32) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    9043 8swk:B (4.32) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    9044 8swk:C (4.32) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    9045 8swk:D (4.32) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    9046 8swk:E (4.32) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    9047 8swk:F (4.32) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    9048 8swn:A (3.1) BS03 ATP ? GO:0005524 ... F1MUC1 38216659
    9049 8swn:A (3.1) BS04 ATP ? GO:0005524 ... F1MUC1 38216659
    9050 8sxn:C (4.04) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    9051 8sxn:D (4.04) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    9052 8szc:C (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    9053 8szc:D (3.06) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    9054 8t1p:C (2.96) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    9055 8t1p:D (2.96) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    9056 8t3k:C (3.33) BS01 ATP 7.6.2.- GO:0005524 ... O07550 37938578
    9057 8t3k:D (3.33) BS01 ATP 7.6.2.- GO:0005524 ... O07549 37938578
    9058 8t5u:A (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9059 8t5u:A (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9060 8t5u:B (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9061 8t5u:B (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9062 8t5u:C (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9063 8t5u:C (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9064 8t5u:D (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9065 8t5u:D (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9066 8t5u:E (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9067 8t5u:E (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9068 8t5u:F (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9069 8t5u:F (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9070 8t5u:G (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9071 8t5u:G (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9072 8t8w:A (2.0) BS01 ATP ? GO:0000828 ... A0A3G4ZNY6 38216735
    9073 8tah:A (2.89) BS02 ATP ? GO:0003779 ... P61157 37898612
    9074 8tah:B (2.89) BS01 ATP ? GO:0003779 ... A7MB62 37898612
    9075 8ti0:A (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9076 8ti0:B (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9077 8ti0:C (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9078 8ti0:D (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9079 8ti0:E (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9080 8ti0:F (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9081 8ti0:G (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9082 8tk8:A (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9083 8tk8:B (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9084 8tk8:C (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9085 8tk8:D (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9086 8tkd:A (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9087 8tkd:B (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9088 8tkd:C (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9089 8tkd:D (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9090 8tke:A (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9091 8tke:B (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9092 8tke:C (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9093 8tke:D (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9094 8tkf:A (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    9095 8tkf:B (3.2) BS05 ATP ? GO:0000822 ... Q14573 37898605
    9096 8tkf:C (3.2) BS05 ATP ? GO:0000822 ... Q14573 37898605
    9097 8tkf:D (3.2) BS06 ATP ? GO:0000822 ... Q14573 37898605
    9098 8tkg:A (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    9099 8tkg:B (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    9100 8tkg:C (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    9101 8tkg:D (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    9102 8tkh:A (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9103 8tkh:B (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9104 8tkh:C (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9105 8tkh:D (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9106 8tki:A (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9107 8tki:B (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9108 8tki:C (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9109 8tki:D (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    9110 8tl9:A (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    9111 8tl9:B (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    9112 8tl9:C (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    9113 8tl9:D (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    9114 8tla:A (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    9115 8tla:B (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    9116 8tla:C (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    9117 8tla:D (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    9118 8tp1:A (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9119 8tp1:A (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9120 8tp1:B (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9121 8tp1:B (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9122 8tp1:C (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9123 8tp1:C (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9124 8tp1:D (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9125 8tp1:D (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9126 8tp1:E (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9127 8tp1:E (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9128 8tp1:F (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9129 8tp1:F (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9130 8tp1:G (3.02) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9131 8tp1:G (3.02) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9132 8tpl:A (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9133 8tpl:A (3.46) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9134 8tpl:B (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9135 8tpl:C (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9136 8tpl:C (3.46) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9137 8tpl:D (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9138 8tpl:E (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9139 8tpl:E (3.46) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    9140 8tpl:F (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9141 8tpl:G (3.46) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    9142 8tre:A () BS01 ATP 2.3.2.26 N/A N/A N/A
    9143 8tsh:A (3.1) BS01 ATP ? GO:0005524 ... A0A2S5T4B3 38570679
    9144 8tsh:A (3.1) BS02 ATP ? GO:0005524 ... A0A2S5T4B3 38570679
    9145 8tsh:B (3.1) BS01 ATP ? GO:0005524 ... A0A2S5T4B3 38570679
    9146 8tsh:B (3.1) BS02 ATP ? GO:0005524 ... A0A2S5T4B3 38570679
    9147 8u0m:B (2.54) BS01 ATP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    9148 8u0v:A (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    9149 8u0v:A (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    9150 8u0v:B (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    9151 8u0v:B (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    9152 8u0v:C (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    9153 8u0v:C (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    9154 8u0v:C (3.89) BS03 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    9155 8u0v:D (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    9156 8u0v:D (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    9157 8u0v:D (3.89) BS03 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    9158 8u0v:E (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    9159 8u0v:E (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    9160 8u0v:F (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    9161 8u1l:A (3.7) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    9162 8u1l:B (3.7) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    9163 8u1m:A (3.5) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    9164 8u1m:B (3.5) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    9165 8u1n:A (3.9) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    9166 8u1n:B (3.9) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    9167 8u3z:N (3.6) BS01 ATP 6.3.2.- GO:0001578 ... A4Q9E8 38658656
    9168 8u7m:A (3.1) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9169 8u7m:B (3.1) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9170 8u7m:C (3.1) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9171 8u7m:D (3.1) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9172 8u7m:E (3.1) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9173 8u7m:F (3.1) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9174 8u7m:G (3.1) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9175 8u7m:H (3.1) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9176 8u7q:A (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9177 8u7q:B (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9178 8u7q:C (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9179 8u7q:D (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9180 8u7q:E (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9181 8u7q:F (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9182 8u7q:G (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9183 8u7q:H (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9184 8u7v:A (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9185 8u7v:B (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9186 8u7v:C (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9187 8u7v:D (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9188 8u7v:E (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9189 8u7v:F (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9190 8u7v:G (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9191 8u7v:H (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9192 8u8o:A (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9193 8u8o:A (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9194 8u8o:B (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9195 8u8o:B (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9196 8u8o:C (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9197 8u8o:C (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9198 8u8o:D (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9199 8u8o:D (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    9200 8u8o:E (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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