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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    8601 8oof:J (2.9) BS01 ATP ? N/A G0S589 37384673
    8602 8ooi:A (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    8603 8ooi:B (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    8604 8ooi:C (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    8605 8ooi:D (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    8606 8ooi:E (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    8607 8ooi:F (2.61) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 38326645
    8608 8ooo:A (2.149) BS01 ATP N/A GO:0003824 ... N/A 38243071
    8609 8ooo:B (2.149) BS01 ATP N/A GO:0003824 ... N/A 38243071
    8610 8ooo:C (2.149) BS01 ATP N/A GO:0003824 ... N/A 38243071
    8611 8ooo:D (2.149) BS01 ATP N/A GO:0003824 ... N/A 38243071
    8612 8ooo:E (2.149) BS02 ATP N/A GO:0003824 ... N/A 38243071
    8613 8ooo:F (2.149) BS03 ATP N/A GO:0003824 ... N/A 38243071
    8614 8ooo:G (2.149) BS02 ATP N/A GO:0003824 ... N/A 38243071
    8615 8ooo:H (2.149) BS03 ATP N/A GO:0003824 ... N/A 38243071
    8616 8ooo:I (2.149) BS02 ATP N/A GO:0003824 ... N/A 38243071
    8617 8ooo:J (2.149) BS03 ATP N/A GO:0003824 ... N/A 38243071
    8618 8ooo:K (2.149) BS02 ATP N/A GO:0003824 ... N/A 38243071
    8619 8ooo:L (2.149) BS03 ATP N/A GO:0003824 ... N/A 38243071
    8620 8oop:J (2.7) BS02 ATP ? N/A G0S589 37384673
    8621 8oor:J (2.87) BS01 ATP ? N/A G0S589 37384673
    8622 8oot:J (2.85) BS01 ATP ? N/A G0S589 37384673
    8623 8ooz:A (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    8624 8ooz:B (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    8625 8ooz:C (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    8626 8ooz:D (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    8627 8ooz:E (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    8628 8ooz:F (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    8629 8ooz:G (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    8630 8ooz:H (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    8631 8ooz:I (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    8632 8ooz:J (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    8633 8ooz:K (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    8634 8ooz:K (2.7) BS02 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    8635 8ooz:L (2.7) BS01 ATP 6.3.1.2 GO:0003824 ... A0A832VZP6 38243071
    8636 8osf:A (4.0) BS01 ATP 6.6.1.1 GO:0005524 ... P58571 37737632
    8637 8osf:A (4.0) BS02 ATP 6.6.1.1 GO:0005524 ... P58571 37737632
    8638 8osf:B (4.0) BS01 ATP 6.6.1.1 GO:0005524 ... P58571 37737632
    8639 8osf:C (4.0) BS01 ATP 6.6.1.1 GO:0005524 ... P58571 37737632
    8640 8osf:D (4.0) BS01 ATP 6.6.1.1 GO:0005524 ... P58571 37737632
    8641 8osf:E (4.0) BS01 ATP 6.6.1.1 GO:0005524 ... P58571 37737632
    8642 8osg:B (3.8) BS01 ATP 6.6.1.1 GO:0005524 ... P58571 37737632
    8643 8osg:C (3.8) BS01 ATP 6.6.1.1 GO:0005524 ... P58571 37737632
    8644 8osg:D (3.8) BS01 ATP 6.6.1.1 GO:0005524 ... P58571 37737632
    8645 8osg:E (3.8) BS01 ATP 6.6.1.1 GO:0005524 ... P58571 37737632
    8646 8osx:A (1.83) BS01 ATP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    8647 8ouy:B (3.4) BS02 ATP ? GO:0000400 ... O43502 37344587
    8648 8ouy:C (3.4) BS01 ATP ? GO:0000400 ... O75771 37344587
    8649 8ouy:D (3.4) BS01 ATP ? GO:0000278 ... O43543 37344587
    8650 8ouz:B (2.2) BS02 ATP ? GO:0000400 ... O43502 37344587
    8651 8ouz:C (2.2) BS01 ATP ? GO:0000400 ... O75771 37344587
    8652 8ouz:C (2.2) BS02 ATP ? GO:0000400 ... O75771 37344587
    8653 8ouz:D (2.2) BS01 ATP ? GO:0000278 ... O43543 37344587
    8654 8p0a:A (3.67) BS01 ATP N/A N/A Q14683 N/A
    8655 8p0a:A (3.67) BS02 ATP N/A N/A Q14683 N/A
    8656 8p0a:B (3.67) BS01 ATP N/A N/A Q9UQE7 N/A
    8657 8p0a:B (3.67) BS02 ATP N/A N/A Q9UQE7 N/A
    8658 8p1m:A (3.23) BS02 ATP 2.7.7.48
    3.1.-.-    		 GO:0000166 ... P23456 N/A
    8659 8p23:A (3.17) BS01 ATP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    8660 8p23:A (3.17) BS02 ATP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    8661 8p23:B (3.17) BS02 ATP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    8662 8p23:B (3.17) BS03 ATP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    8663 8p39:B (2.58) BS03 ATP 1.17.4.2 GO:0004748 ... A0A3E4SF67 38968292
    8664 8p4p:A (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8665 8p4p:B (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8666 8p4p:C (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8667 8p4p:D (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8668 8p4p:E (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8669 8p4p:F (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8670 8p4p:G (9.6) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8671 8p4r:A (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8672 8p4r:B (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8673 8p4r:C (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8674 8p4r:D (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8675 8p4r:E (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8676 8p4r:F (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8677 8p4r:G (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8678 8p4r:H (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8679 8p4r:I (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8680 8p4r:J (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8681 8p4r:K (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8682 8p4r:L (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8683 8p4r:M (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8684 8p4r:N (11.9) BS01 ATP N/A GO:0005524 ... A0A140NH65 39169181
    8685 8p5e:2 (3.9) BS02 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    8686 8p5e:2 (3.9) BS04 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    8687 8p5e:3 (3.9) BS01 ATP 3.6.4.12 GO:0000727 ... P24279 38760633
    8688 8p5e:3 (3.9) BS02 ATP 3.6.4.12 GO:0000727 ... P24279 38760633
    8689 8p5e:5 (3.9) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    8690 8p5e:5 (3.9) BS03 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    8691 8p5e:6 (3.9) BS02 ATP 3.6.4.12 GO:0000727 ... P53091 38760633
    8692 8p5e:7 (3.9) BS01 ATP 3.6.4.12 GO:0000727 ... P38132 38760633
    8693 8p62:2 (3.9) BS01 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    8694 8p62:2 (3.9) BS03 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    8695 8p62:3 (3.9) BS02 ATP 3.6.4.12 GO:0000727 ... P24279 38760633
    8696 8p62:3 (3.9) BS03 ATP 3.6.4.12 GO:0000727 ... P24279 38760633
    8697 8p62:5 (3.9) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    8698 8p62:5 (3.9) BS03 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    8699 8p62:6 (3.9) BS02 ATP 3.6.4.12 GO:0000727 ... P53091 38760633
    8700 8p62:7 (3.9) BS01 ATP 3.6.4.12 GO:0000727 ... P38132 38760633
    8701 8p63:2 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    8702 8p63:2 (3.7) BS04 ATP 3.6.4.12 GO:0000727 ... P29469 38760633
    8703 8p63:3 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P24279 38760633
    8704 8p63:5 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    8705 8p63:5 (3.7) BS03 ATP 3.6.4.12 GO:0000727 ... P29496 38760633
    8706 8p63:6 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P53091 38760633
    8707 8p63:7 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P38132 38760633
    8708 8pbc:A (2.61) BS03 ATP ? GO:0000150 ... Q06609 37919288
    8709 8pbc:A (2.61) BS06 ATP ? GO:0000150 ... Q06609 37919288
    8710 8pbc:B (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    8711 8pbc:B (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    8712 8pbc:C (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    8713 8pbc:C (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    8714 8pbc:D (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    8715 8pbc:D (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    8716 8pbc:E (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    8717 8pbc:E (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    8718 8pbc:F (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    8719 8pbc:F (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    8720 8pbc:G (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    8721 8pbc:G (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    8722 8pbc:H (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    8723 8pbc:H (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    8724 8pbc:I (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    8725 8pbc:I (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    8726 8pbc:J (2.61) BS04 ATP ? GO:0000150 ... Q06609 37919288
    8727 8pbc:J (2.61) BS07 ATP ? GO:0000150 ... Q06609 37919288
    8728 8pbc:K (2.61) BS02 ATP ? GO:0000150 ... Q06609 37919288
    8729 8pbd:A (2.83) BS04 ATP ? GO:0000150 ... Q06609 37919288
    8730 8pbd:A (2.83) BS07 ATP ? GO:0000150 ... Q06609 37919288
    8731 8pbd:B (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    8732 8pbd:B (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    8733 8pbd:C (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    8734 8pbd:C (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    8735 8pbd:D (2.83) BS04 ATP ? GO:0000150 ... Q06609 37919288
    8736 8pbd:D (2.83) BS07 ATP ? GO:0000150 ... Q06609 37919288
    8737 8pbd:E (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    8738 8pbd:E (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    8739 8pbd:F (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    8740 8pbd:F (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    8741 8pbd:G (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    8742 8pbd:G (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    8743 8pbd:H (2.83) BS05 ATP ? GO:0000150 ... Q06609 37919288
    8744 8pbd:H (2.83) BS08 ATP ? GO:0000150 ... Q06609 37919288
    8745 8pbd:I (2.83) BS04 ATP ? GO:0000150 ... Q06609 37919288
    8746 8pbd:I (2.83) BS07 ATP ? GO:0000150 ... Q06609 37919288
    8747 8pbd:J (2.83) BS02 ATP ? GO:0000150 ... Q06609 37919288
    8748 8phd:A (2.08) BS01 ATP ? GO:0000287 ... O75794 37507029
    8749 8phd:C (2.08) BS01 ATP ? GO:0000287 ... O75794 37507029
    8750 8phv:A (1.97) BS01 ATP ? GO:0000287 ... O75794 37507029
    8751 8phv:C (1.97) BS01 ATP ? GO:0000287 ... O75794 37507029
    8752 8pmd:A (2.95) BS01 ATP 7.6.2.- GO:0000139 ... O95342 37949847
    8753 8pmd:A (2.95) BS02 ATP 7.6.2.- GO:0000139 ... O95342 37949847
    8754 8pme:A (2.15) BS01 ATP ? N/A A0A8K1DE77 38600265
    8755 8pme:B (2.15) BS01 ATP ? N/A A0A8K1DE77 38600265
    8756 8pme:C (2.15) BS01 ATP ? N/A A0A8K1DE77 38600265
    8757 8pmg:A (3.29) BS01 ATP ? N/A B4XT64 38600265
    8758 8pmg:B (3.29) BS01 ATP ? N/A B4XT64 38600265
    8759 8pmg:C (3.29) BS01 ATP ? N/A B4XT64 38600265
    8760 8pmg:D (3.29) BS01 ATP ? N/A B4XT64 38600265
    8761 8pmg:E (3.29) BS01 ATP ? N/A B4XT64 38600265
    8762 8pmg:F (3.29) BS01 ATP ? N/A B4XT64 38600265
    8763 8pmi:A (2.83) BS01 ATP ? N/A B4XT64 38600265
    8764 8pmi:B (2.83) BS01 ATP ? N/A B4XT64 38600265
    8765 8pmi:C (2.83) BS01 ATP ? N/A B4XT64 38600265
    8766 8pmi:D (2.83) BS01 ATP ? N/A B4XT64 38600265
    8767 8pmi:E (2.83) BS01 ATP ? N/A B4XT64 38600265
    8768 8pmi:F (2.83) BS01 ATP ? N/A B4XT64 38600265
    8769 8pmj:A (2.81) BS01 ATP 7.6.2.- GO:0000139 ... O95342 37949847
    8770 8pml:A (2.95) BS01 ATP ? N/A B4XT64 38600265
    8771 8pml:B (2.95) BS01 ATP ? N/A B4XT64 38600265
    8772 8pml:C (2.95) BS01 ATP ? N/A B4XT64 38600265
    8773 8pml:D (2.95) BS01 ATP ? N/A B4XT64 38600265
    8774 8pml:E (2.95) BS01 ATP ? N/A B4XT64 38600265
    8775 8pml:F (2.95) BS01 ATP ? N/A B4XT64 38600265
    8776 8pmm:A (1.75) BS01 ATP ? N/A B4XT64 38600265
    8777 8pmm:B (1.75) BS01 ATP ? N/A B4XT64 38600265
    8778 8pmm:C (1.75) BS01 ATP ? N/A B4XT64 38600265
    8779 8pn1:A (2.4) BS01 ATP ? N/A B4XT64 38600265
    8780 8pn1:B (2.4) BS01 ATP ? N/A B4XT64 38600265
    8781 8pn1:C (2.4) BS01 ATP ? N/A B4XT64 38600265
    8782 8pn1:D (2.4) BS01 ATP ? N/A B4XT64 38600265
    8783 8pn1:E (2.4) BS01 ATP ? N/A B4XT64 38600265
    8784 8pn1:F (2.4) BS01 ATP ? N/A B4XT64 38600265
    8785 8pn2:A (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    8786 8pn2:B (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    8787 8pn2:C (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    8788 8pn2:D (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    8789 8pn2:E (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    8790 8pn2:F (2.63) BS01 ATP ? GO:0005634 ... B4XT64 38600265
    8791 8po4:B (1.621) BS01 ATP 2.7.10.1 N/A P00533 38770784
    8792 8ppb:A (1.8) BS02 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    8793 8ppb:B (1.8) BS02 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    8794 8ppc:A (1.92) BS02 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    8795 8ppc:B (1.92) BS02 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    8796 8ppd:A (1.77) BS01 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    8797 8ppd:B (1.77) BS02 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    8798 8pph:A (1.7) BS01 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    8799 8pph:B (1.7) BS01 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    8800 8ppi:A (1.65) BS02 ATP 2.7.1.127 GO:0016301 ... P23677 38374076
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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