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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7401 8bm1:K (2.7) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7402 8bm1:L (2.7) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7403 8bm1:N (2.7) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7404 8bm1:O (2.7) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7405 8bm1:Q (2.7) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7406 8bm1:R (2.7) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7407 8bm1:T (2.7) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7408 8bmd:A (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7409 8bmd:B (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7410 8bmd:C (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7411 8bmd:D (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7412 8bmd:E (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7413 8bmd:F (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7414 8bmd:G (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7415 8bmd:H (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7416 8bmd:I (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7417 8bmd:J (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7418 8bmd:K (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7419 8bmd:L (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7420 8bmd:M (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7421 8bmd:N (2.8) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7422 8bmo:A (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7423 8bmo:B (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7424 8bmo:C (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7425 8bmo:E (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7426 8bmo:F (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7427 8bmo:H (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7428 8bmo:I (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7429 8bmo:J (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7430 8bmo:L (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7431 8bmo:M (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7432 8bmo:O (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7433 8bmo:P (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7434 8bmo:R (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7435 8bmo:S (3.4) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7436 8bmp:A (3.2) BS01 ATP 7.-.-.- GO:0005524 ... Q1GBJ0 37491368
    7437 8bms:A (2.6) BS01 ATP 7.-.-.- GO:0005524 ... Q1GBJ0 37491368
    7438 8bms:A (2.6) BS03 ATP 7.-.-.- GO:0005524 ... Q1GBJ0 37491368
    7439 8bms:B (2.6) BS01 ATP 3.6.3.- GO:0005524 ... Q1GBI9 37491368
    7440 8bms:B (2.6) BS02 ATP 3.6.3.- GO:0005524 ... Q1GBI9 37491368
    7441 8bmt:A (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7442 8bmt:BA (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7443 8bmt:C (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7444 8bmt:E (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7445 8bmt:G (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7446 8bmt:I (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7447 8bmt:J (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7448 8bmt:L (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7449 8bmt:N (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7450 8bmt:P (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7451 8bmt:R (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7452 8bmt:T (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7453 8bmt:X (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7454 8bmt:Z (2.5) BS01 ATP 5.6.1.7 GO:0000287 ... P0A6F5 37592181
    7455 8bo1:A (2.501) BS02 ATP 3.6.4.- GO:0000287 ... P68135 37747912
    7456 8bo1:C (2.501) BS02 ATP 3.6.4.- GO:0000287 ... P68135 37747912
    7457 8bq2:A (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    7458 8bq2:A (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    7459 8bq2:B (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    7460 8bq2:B (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    7461 8bq2:C (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    7462 8bq2:C (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    7463 8bq2:D (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    7464 8bq2:D (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    7465 8bq2:E (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    7466 8bq2:E (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    7467 8bq2:F (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    7468 8bq2:F (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    7469 8bq2:G (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    7470 8bq2:G (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    7471 8bq2:H (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    7472 8bq2:H (3.8) BS05 ATP ? GO:0000150 ... Q06609 37216117
    7473 8bq2:I (3.8) BS02 ATP ? GO:0000150 ... Q06609 37216117
    7474 8bqs:DB (2.9) BS03 ATP 7.1.1.9 GO:0004129 ... Q950Y9 N/A
    7475 8bqs:DF (2.9) BS01 ATP ? N/A Q24I72 N/A
    7476 8bqs:Db (2.9) BS02 ATP 7.1.1.9 GO:0004129 ... Q950Y9 N/A
    7477 8bqs:ER (2.9) BS01 ATP ? N/A I7M9E7 N/A
    7478 8bqs:Er (2.9) BS01 ATP ? N/A I7M9E7 N/A
    7479 8br1:A (2.044) BS02 ATP 3.6.4.- GO:0000287 ... P68135 37747912
    7480 8br1:C (2.044) BS01 ATP 3.6.4.- GO:0000287 ... P68135 37747912
    7481 8br2:A (2.9) BS03 ATP ? GO:0000150 ... Q06609 37216117
    7482 8br2:A (2.9) BS05 ATP ? GO:0000150 ... Q06609 37216117
    7483 8br2:B (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    7484 8br2:B (2.9) BS06 ATP ? GO:0000150 ... Q06609 37216117
    7485 8br2:C (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    7486 8br2:C (2.9) BS06 ATP ? GO:0000150 ... Q06609 37216117
    7487 8br2:D (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    7488 8br2:D (2.9) BS06 ATP ? GO:0000150 ... Q06609 37216117
    7489 8br2:E (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    7490 8br2:E (2.9) BS06 ATP ? GO:0000150 ... Q06609 37216117
    7491 8br2:F (2.9) BS04 ATP ? GO:0000150 ... Q06609 37216117
    7492 8btg:A (3.2) BS03 ATP ? GO:0003677 ... P05648 38097584
    7493 8btg:A (3.2) BS04 ATP ? GO:0003677 ... P05648 38097584
    7494 8btg:B (3.2) BS04 ATP ? GO:0003677 ... P05648 38097584
    7495 8btg:C (3.2) BS03 ATP ? GO:0003677 ... P05648 38097584
    7496 8btg:D (3.2) BS03 ATP ? GO:0003677 ... P05648 38097584
    7497 8btg:E (3.2) BS02 ATP ? GO:0003677 ... P05648 38097584
    7498 8btg:E (3.2) BS03 ATP ? GO:0003677 ... P05648 38097584
    7499 8btg:F (3.2) BS02 ATP ? GO:0003677 ... P05648 38097584
    7500 8btg:G (3.2) BS02 ATP ? GO:0003677 ... P05648 38097584
    7501 8buu:9 (2.9) BS04 ATP ? GO:0005524 ... W1SM44 36951104
    7502 8buu:9 (2.9) BS05 ATP ? GO:0005524 ... W1SM44 36951104
    7503 8bwo:A (3.2) BS01 ATP 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 37683641
    7504 8bwo:A (3.2) BS02 ATP 7.6.2.-
    7.6.2.2
    7.6.2.3
    GO:0001409 ... O15439 37683641
    7505 8bwy:C (38.0) BS04 ATP ? GO:0005524 ... Q22A67 37051721
    7506 8bx8:A (30.3) BS02 ATP ? GO:0005524 ... Q22A67 37051721
    7507 8bx8:B (30.3) BS01 ATP ? GO:0005524 ... I7M9J2 37051721
    7508 8bx8:C (30.3) BS01 ATP ? GO:0005524 ... I7M6H4 37051721
    7509 8c08:A (2.2) BS01 ATP 2.7.10.2 GO:0004672 ... O60674 38457493
    7510 8c08:B (2.2) BS01 ATP 2.7.10.2 GO:0004672 ... O60674 38457493
    7511 8c0v:A (4.1) BS01 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    7512 8c0v:A (4.1) BS02 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    7513 8c0v:B (4.1) BS01 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    7514 8c0v:B (4.1) BS02 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    7515 8c0v:B (4.1) BS03 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    7516 8c0v:C (4.1) BS02 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    7517 8c0v:C (4.1) BS03 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    7518 8c0v:D (4.1) BS01 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    7519 8c0v:D (4.1) BS02 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    7520 8c0v:D (4.1) BS03 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    7521 8c0v:E (4.1) BS01 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    7522 8c0v:E (4.1) BS02 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    7523 8c0v:F (4.1) BS01 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    7524 8c0w:A (4.7) BS01 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    7525 8c0w:A (4.7) BS02 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    7526 8c0w:B (4.7) BS01 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    7527 8c0w:B (4.7) BS02 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    7528 8c0w:C (4.7) BS01 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    7529 8c0w:C (4.7) BS02 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    7530 8c0w:D (4.7) BS01 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    7531 8c0w:E (4.7) BS01 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    7532 8c0w:E (4.7) BS02 ATP 3.6.4.- GO:0005515 ... P33760 37741838
    7533 8c0w:F (4.7) BS01 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    7534 8c0w:F (4.7) BS02 ATP 3.6.4.- GO:0005524 ... P24004 37741838
    7535 8c1e:A (2.798) BS03 ATP 2.7.11.1 GO:0000212 ... O14965 39190548
    7536 8c47:A (2.2) BS01 ATP 3.6.4.- GO:0005524 ... P45520 38340794
    7537 8c4o:A (1.97) BS01 ATP 2.7.7.85 GO:0004016 ... Q8Y5E4 37223749
    7538 8c4o:B (1.97) BS01 ATP 2.7.7.85 GO:0004016 ... Q8Y5E4 37223749
    7539 8c51:A (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... P50098 38402242
    7540 8c51:B (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... P50098 38402242
    7541 8c53:A (2.3) BS02 ATP 1.1.1.205 GO:0000166 ... P50098 38402242
    7542 8c53:B (2.3) BS01 ATP 1.1.1.205 GO:0000166 ... P50098 38402242
    7543 8c53:B (2.3) BS03 ATP 1.1.1.205 GO:0000166 ... P50098 38402242
    7544 8c6j:7 (2.8) BS03 ATP 3.6.4.13 GO:0000184 ... P38919 36867703
    7545 8cas:k (3.3) BS03 ATP ? GO:0000054 ... Q03195 37169754
    7546 8ce5:A (3.62) BS02 ATP 7.6.2.5 GO:0005515 ... P33931 37626034
    7547 8ce5:A (3.62) BS03 ATP 7.6.2.5 GO:0005515 ... P33931 37626034
    7548 8ce5:a (3.62) BS01 ATP 7.6.2.5 GO:0005515 ... P33931 37626034
    7549 8ce5:a (3.62) BS02 ATP 7.6.2.5 GO:0005515 ... P33931 37626034
    7550 8cgy:A (3.0) BS01 ATP 1.1.1.205 GO:0000166 ... P50098 38402242
    7551 8cgy:B (3.0) BS01 ATP 1.1.1.205 GO:0000166 ... P50098 38402242
    7552 8csp:X (2.66) BS02 ATP ? GO:0003723 ... P51398 36482135
    7553 8csq:X (2.54) BS02 ATP ? GO:0003723 ... P51398 36482135
    7554 8csr:X (2.54) BS02 ATP ? GO:0003723 ... P51398 36482135
    7555 8css:X (2.36) BS02 ATP ? GO:0003723 ... P51398 36482135
    7556 8cst:X (2.85) BS02 ATP ? GO:0003723 ... P51398 36482135
    7557 8csu:X (3.03) BS02 ATP ? GO:0003723 ... P51398 36482135
    7558 8cvt:A (3.0) BS01 ATP ? GO:0000502 ... P35998 35858375
    7559 8cvt:B (3.0) BS01 ATP ? GO:0000502 ... P62191 35858375
    7560 8cvt:C (3.0) BS01 ATP ? GO:0000502 ... P62195 35858375
    7561 8cvt:D (3.0) BS01 ATP ? GO:0000502 ... P43686 35858375
    7562 8cvt:F (3.0) BS01 ATP ? GO:0000502 ... P17980 35858375
    7563 8d8k:W (3.13) BS02 ATP ? GO:0003735 ... Q01163 36482135
    7564 8d8l:W (2.6) BS02 ATP ? GO:0003735 ... Q01163 36482135
    7565 8dar:A (3.0) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7566 8dar:B (3.0) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7567 8dar:C (3.0) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7568 8dar:D (3.0) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7569 8dar:E (3.0) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7570 8dar:F (3.0) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7571 8das:A (3.5) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7572 8das:B (3.5) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7573 8das:D (3.5) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7574 8das:E (3.5) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7575 8das:F (3.5) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7576 8dat:A (3.8) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7577 8dat:B (3.8) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7578 8dat:D (3.8) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7579 8dat:E (3.8) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7580 8dat:F (3.8) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7581 8dau:A (3.7) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7582 8dau:B (3.7) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7583 8dau:C (3.7) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7584 8dau:D (3.7) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7585 8dau:F (3.7) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7586 8dav:A (3.5) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7587 8dav:B (3.5) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7588 8dav:C (3.5) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7589 8dav:D (3.5) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7590 8dav:F (3.5) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7591 8daw:A (3.6) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7592 8daw:B (3.6) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7593 8daw:C (3.6) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7594 8daw:D (3.6) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7595 8daw:F (3.6) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 36574706
    7596 8dbg:A (2.2) BS01 ATP 2.7.6.1 GO:0000287 ... P60891 36747094
    7597 8dbg:A (2.2) BS04 ATP 2.7.6.1 GO:0000287 ... P60891 36747094
    7598 8dbg:B (2.2) BS01 ATP 2.7.6.1 GO:0000287 ... P60891 36747094
    7599 8dbg:B (2.2) BS03 ATP 2.7.6.1 GO:0000287 ... P60891 36747094
    7600 8dbg:C (2.2) BS02 ATP 2.7.6.1 GO:0000287 ... P60891 36747094

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218