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BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    7001 7y5b:F (4.4) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 36445139
    7002 7y5c:A (4.7) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 36445139
    7003 7y5c:A (4.7) BS02 ATP 7.1.2.2 GO:0005524 ... A0R202 36445139
    7004 7y5c:B (4.7) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 36445139
    7005 7y5c:C (4.7) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 36445139
    7006 7y5c:D (4.7) BS02 ATP 7.1.2.2 GO:0005524 ... A0R200 36445139
    7007 7y5c:F (4.7) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 36445139
    7008 7y77:A (2.6) BS01 ATP ? N/A B4XT64 37349549
    7009 7y77:B (2.6) BS01 ATP ? N/A B4XT64 37349549
    7010 7y77:C (2.6) BS01 ATP ? N/A B4XT64 37349549
    7011 7y7t:B (2.5) BS03 ATP 2.7.7.48 GO:0003968 ... Q9Y7G6 36039765
    7012 7yfn:B (3.8) BS01 ATP ? GO:0000785 ... P80428 36417436
    7013 7yfp:B (4.0) BS01 ATP ? GO:0000785 ... P80428 36417436
    7014 7ykk:A (5.9) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7015 7ykk:B (5.9) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7016 7ykk:C (5.9) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7017 7ykk:D (5.9) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7018 7ykk:E (5.9) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7019 7ykk:F (5.9) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7020 7ykl:A (5.6) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7021 7ykl:B (5.6) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7022 7ykl:C (5.6) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7023 7ykl:D (5.6) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7024 7ykl:E (5.6) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7025 7ykl:F (5.6) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7026 7ykt:A (5.9) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7027 7ykt:B (5.9) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7028 7ykt:C (5.9) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7029 7ykt:D (5.9) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7030 7ykt:E (5.9) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7031 7ykt:F (5.9) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7032 7ykz:A (4.3) BS02 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7033 7ykz:B (4.3) BS02 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7034 7ykz:C (4.3) BS04 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7035 7ykz:D (4.3) BS02 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7036 7ykz:E (4.3) BS02 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7037 7ykz:F (4.3) BS02 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    7038 7yry:A (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A3M142 37318822
    7039 7yry:B (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A3M142 37318822
    7040 7yry:C (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A3M142 37318822
    7041 7ywm:A (1.624) BS01 ATP 2.7.7.3 GO:0003824 ... B1MDL6 35712348
    7042 7ywm:B (1.624) BS01 ATP 2.7.7.3 GO:0003824 ... B1MDL6 35712348
    7043 7ywm:C (1.624) BS01 ATP 2.7.7.3 GO:0003824 ... B1MDL6 35712348
    7044 7z13:2 (3.4) BS02 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    7045 7z13:2 (3.4) BS04 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    7046 7z13:3 (3.4) BS02 ATP 3.6.4.12 GO:0000727 ... P24279 35705812
    7047 7z13:3 (3.4) BS03 ATP 3.6.4.12 GO:0000727 ... P24279 35705812
    7048 7z13:5 (3.4) BS02 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    7049 7z13:5 (3.4) BS03 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    7050 7z13:6 (3.4) BS02 ATP 3.6.4.12 GO:0000727 ... P53091 35705812
    7051 7z13:7 (3.4) BS01 ATP N/A GO:0003677 ... N/A 35705812
    7052 7z13:a (3.4) BS02 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    7053 7z13:a (3.4) BS04 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    7054 7z13:b (3.4) BS02 ATP 3.6.4.12 GO:0000727 ... P24279 35705812
    7055 7z13:b (3.4) BS03 ATP 3.6.4.12 GO:0000727 ... P24279 35705812
    7056 7z13:d (3.4) BS02 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    7057 7z13:d (3.4) BS03 ATP 3.6.4.12 GO:0003677 ... N/A 35705812
    7058 7z13:e (3.4) BS02 ATP 3.6.4.12 GO:0000727 ... P53091 35705812
    7059 7z13:f (3.4) BS01 ATP N/A GO:0003677 ... N/A 35705812
    7060 7z15:K (1.93) BS01 ATP 2.7.8.37 GO:0005524 ... P16679 36813778
    7061 7z15:L (1.93) BS01 ATP 2.7.8.37 GO:0005524 ... P16679 36813778
    7062 7z18:I (1.98) BS01 ATP ? GO:0000166 ... P16678 36813778
    7063 7z18:I (1.98) BS03 ATP ? GO:0000166 ... P16678 36813778
    7064 7z18:J (1.98) BS01 ATP ? GO:0000166 ... P16678 36813778
    7065 7z18:J (1.98) BS02 ATP ? GO:0000166 ... P16678 36813778
    7066 7z37:AP1 (3.67) BS01 ATP ? GO:0001890 ... P08238 36055235
    7067 7z37:BP1 (3.67) BS01 ATP ? GO:0001890 ... P08238 36055235
    7068 7z38:A (3.16) BS01 ATP ? GO:0001890 ... P08238 36055235
    7069 7z38:B (3.16) BS01 ATP ? GO:0001890 ... P08238 36055235
    7070 7z3n:D (3.2) BS01 ATP ? GO:0005515 ... G0RZX9 37081320
    7071 7z3o:D (3.3) BS01 ATP ? GO:0005515 ... G0RZX9 37081320
    7072 7z5j:A (2.58) BS02 ATP ? GO:0005737 ... P84308 35779405
    7073 7z5j:B (2.58) BS02 ATP ? GO:0005737 ... P84253 35779405
    7074 7z5j:C (2.58) BS02 ATP ? GO:0005737 ... P84308 35779405
    7075 7z5j:D (2.58) BS02 ATP ? GO:0005737 ... P84253 35779405
    7076 7z5j:E (2.58) BS03 ATP ? GO:0005737 ... P84308 35779405
    7077 7z5j:F (2.58) BS02 ATP ? GO:0005737 ... P84253 35779405
    7078 7z5j:G (2.58) BS03 ATP ? GO:0005737 ... P84308 35779405
    7079 7z5j:H (2.58) BS02 ATP ? GO:0005737 ... P84253 35779405
    7080 7z5j:I (2.58) BS02 ATP ? GO:0005737 ... P84308 35779405
    7081 7z5j:J (2.58) BS02 ATP ? GO:0005737 ... P84253 35779405
    7082 7z5j:K (2.58) BS03 ATP ? GO:0005737 ... P84308 35779405
    7083 7z5j:L (2.58) BS02 ATP ? GO:0005737 ... P84253 35779405
    7084 7z6r:C (2.55) BS01 ATP 2.4.2.17 GO:0000105 ... Q4FQF7 36494361
    7085 7z6r:D (2.55) BS02 ATP 2.4.2.17 GO:0000105 ... Q4FQF7 36494361
    7086 7z8f:J (20.0) BS01 ATP ? GO:0005737 ... I3LHK5 36071160
    7087 7z8f:e (20.0) BS02 ATP ? GO:0003723 ... Q14204 36071160
    7088 7z8f:f (20.0) BS02 ATP ? GO:0003723 ... Q14204 36071160
    7089 7z8f:m (20.0) BS02 ATP ? GO:0003723 ... Q14204 36071160
    7090 7z8f:n (20.0) BS02 ATP ? GO:0003723 ... Q14204 36071160
    7091 7z8g:A (3.52) BS02 ATP ? GO:0003723 ... Q14204 36071160
    7092 7z8h:A (3.41) BS02 ATP ? GO:0003723 ... Q14204 36071160
    7093 7z8l:f (4.9) BS02 ATP ? GO:0003723 ... Q14204 36071160
    7094 7z8m:J (3.37) BS01 ATP ? GO:0005737 ... I3LHK5 36071160
    7095 7z8u:A (2.0) BS02 ATP 2.4.2.17 GO:0000105 ... Q4FQF7 36494361
    7096 7z9t:BBB (2.6) BS02 ATP 2.7.11.24 GO:0000077 ... P47811 37308482
    7097 7zda:D (3.17) BS02 ATP 7.4.2.- GO:0005524 ... P29018 37095238
    7098 7zdb:D (3.35) BS02 ATP 7.4.2.- GO:0005524 ... P29018 37095238
    7099 7zdt:C (2.71) BS02 ATP 7.4.2.- GO:0005524 ... P23886 37095238
    7100 7zdt:D (2.71) BS01 ATP 7.4.2.- GO:0005524 ... P29018 37095238
    7101 7zdu:C (2.98) BS02 ATP 7.4.2.- GO:0005524 ... P23886 37095238
    7102 7zdu:C (2.98) BS03 ATP 7.4.2.- GO:0005524 ... P23886 37095238
    7103 7zdu:D (2.98) BS01 ATP 7.4.2.- GO:0005524 ... P29018 37095238
    7104 7zdu:D (2.98) BS03 ATP 7.4.2.- GO:0005524 ... P29018 37095238
    7105 7ze5:C (2.94) BS02 ATP 7.4.2.- GO:0005524 ... P23886 37095238
    7106 7ze5:D (2.94) BS01 ATP 7.4.2.- GO:0005524 ... P29018 37095238
    7107 7zec:D (3.05) BS03 ATP 7.4.2.- GO:0005524 ... P29018 37095238
    7108 7zh9:A (1.72) BS01 ATP 6.2.1.45 GO:0004839 ... P22515 35970836
    7109 7zk4:A (2.6) BS01 ATP 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    7110 7zk4:A (2.6) BS03 ATP 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    7111 7zk5:A (2.6) BS01 ATP 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    7112 7zk5:A (2.6) BS03 ATP 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    7113 7zk6:A (3.1) BS01 ATP 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    7114 7zk6:A (3.1) BS03 ATP 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    7115 7zk8:A (3.0) BS01 ATP 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    7116 7zk8:A (3.0) BS03 ATP 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    7117 7zka:A (2.9) BS02 ATP 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    7118 7zka:A (2.9) BS04 ATP 7.6.2.1
    7.6.2.2
    GO:0001666 ... P21447 38259172
    7119 7zpu:M (1.96) BS01 ATP ? GO:0000902 ... A0A150MJ77 37818717
    7120 7zqq:A (1.75) BS01 ATP ? GO:0005737 ... P84308 35779405
    7121 7zqq:B (1.75) BS01 ATP ? GO:0005737 ... P84253 35779405
    7122 7zr0:A (3.4) BS01 ATP ? GO:0001890 ... P08238 36446791
    7123 7zr0:B (3.4) BS01 ATP ? GO:0001890 ... P08238 36446791
    7124 7zr4:A (1.701) BS02 ATP ? GO:0005737 ... P84308 35779405
    7125 7zr4:B (1.701) BS01 ATP ? GO:0005737 ... P84253 35779405
    7126 7zr5:A (3.9) BS01 ATP ? GO:0001890 ... P08238 36446791
    7127 7zr5:B (3.9) BS01 ATP ? GO:0001890 ... P08238 36446791
    7128 7zr6:A (4.2) BS01 ATP ? GO:0001890 ... P08238 36446791
    7129 7zr6:B (4.2) BS01 ATP ? GO:0001890 ... P08238 36446791
    7130 7zrg:B (3.5) BS02 ATP 7.2.2.6 GO:0000166 ... P03960 36255052
    7131 7zse:A (1.4) BS02 ATP ? GO:0005737 ... P84308 35779405
    7132 7zse:B (1.4) BS01 ATP ? GO:0005737 ... P84253 35779405
    7133 7zvw:B (3.4) BS01 ATP 3.6.4.- GO:0005524 ... Q9P4D1 37550452
    7134 7zvw:G (3.4) BS01 ATP ? GO:0000785 ... C4QXM9 37550452
    7135 7zy2:A (1.51) BS01 ATP 2.7.11.1 GO:0004672 ... P68400 36426237
    7136 7zyd:A (1.404) BS01 ATP 2.7.11.1 GO:0004672 ... P68400 36426237
    7137 7zyo:A (1.58) BS01 ATP 2.7.11.1 GO:0004672 ... P68400 36426237
    7138 7zyr:A (1.85) BS01 ATP 2.7.11.1 GO:0004672 ... P68400 36426237
    7139 7zz3:A (2.41) BS04 ATP N/A GO:0003824 ... N/A 36261450
    7140 7zz4:A (2.63) BS01 ATP N/A GO:0003824 ... N/A 36261450
    7141 8a22:Bw (2.91) BS02 ATP N/A N/A N/A 36253367
    7142 8a3u:A (2.33) BS01 ATP 2.7.13.3 GO:0000155 ... P23222
    Q88JB0
    N/A
    7143 8a52:A (2.461) BS01 ATP ?
    2.7.13.3
    GO:0000155 ... P23222
    Q88JB0
    N/A
    7144 8a52:B (2.461) BS01 ATP ?
    2.7.13.3
    GO:0000155 ... P23222
    Q88JB0
    N/A
    7145 8a5a:U (3.3) BS01 ATP ? GO:0003729 ... Q12386 36490333
    7146 8a5a:V (3.3) BS01 ATP 3.6.4.- GO:0000011 ... P60010 36490333
    7147 8a5a:W (3.3) BS01 ATP ? GO:0000785 ... P80428 36490333
    7148 8a5p:U (3.4) BS02 ATP ? GO:0005524 ... G0S519 36490333
    7149 8a5p:V (3.4) BS01 ATP ? GO:0005856 ... G0SE15 36490333
    7150 8a5p:W (3.4) BS01 ATP ? GO:0003682 ... G0SBW4 36490333
    7151 8a5q:U (3.3) BS02 ATP ? GO:0005524 ... G0S519 36490333
    7152 8a5q:V (3.3) BS01 ATP ? GO:0005856 ... G0SE15 36490333
    7153 8a5q:W (3.3) BS01 ATP ? GO:0003682 ... G0SBW4 36490333
    7154 8a6x:A (2.45) BS01 ATP 2.7.13.3 GO:0000155 ... P23222
    Q88JB0
    N/A
    7155 8a6x:B (2.45) BS01 ATP 2.7.13.3 GO:0000155 ... P23222
    Q88JB0
    N/A
    7156 8a7f:A (2.71) BS01 ATP 2.7.13.3 GO:0000155 ... P23222
    Q88JB0
    N/A
    7157 8a7f:B (2.71) BS01 ATP 2.7.13.3 GO:0000155 ... P23222
    Q88JB0
    N/A
    7158 8a7h:A (3.145) BS01 ATP 2.7.13.3 GO:0000155 ... P23222
    Q88JB0
    N/A
    7159 8a7h:B (3.145) BS01 ATP 2.7.13.3 GO:0000155 ... P23222
    Q88JB0
    N/A
    7160 8aaz:A (1.27) BS01 ATP 3.2.1.17 GO:0003796 ... P00698 36608272
    7161 8aaz:A (1.27) BS02 ATP 3.2.1.17 GO:0003796 ... P00698 36608272
    7162 8aaz:A (1.27) BS03 ATP 3.2.1.17 GO:0003796 ... P00698 36608272
    7163 8aec:A (1.09) BS01 ATP 2.7.11.1 GO:0004672 ... P68400 36426237
    7164 8aek:A (1.65) BS02 ATP 2.7.11.1 GO:0004672 ... P68400 36426237
    7165 8aem:A (1.6) BS02 ATP 2.7.11.1 GO:0004672 ... P68400 36426237
    7166 8amz:H (3.3) BS01 ATP ? GO:0000502 ... Q41365 N/A
    7167 8any:AX (2.85) BS02 ATP ? GO:0003723 ... P51398 39134711
    7168 8ap6:A1 (3.2) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7169 8ap6:A2 (3.2) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7170 8ap6:B1 (3.2) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7171 8ap6:B1 (3.2) BS02 ATP ? GO:0005524 ... Q9GS23 36220811
    7172 8ap6:B2 (3.2) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7173 8ap6:B2 (3.2) BS02 ATP ? GO:0005524 ... Q9GS23 36220811
    7174 8ap6:C1 (3.2) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7175 8ap6:C2 (3.2) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7176 8ap6:F1 (3.2) BS01 ATP 7.1.2.2 GO:0005524 ... Q9GPE9 36220811
    7177 8ap6:F2 (3.2) BS01 ATP 7.1.2.2 GO:0005524 ... Q9GPE9 36220811
    7178 8apa:A1 (3.7) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7179 8apa:B1 (3.7) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7180 8apa:B1 (3.7) BS02 ATP ? GO:0005524 ... Q9GS23 36220811
    7181 8apa:C1 (3.7) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7182 8apa:F1 (3.7) BS01 ATP 7.1.2.2 GO:0005524 ... Q9GPE9 36220811
    7183 8apb:A1 (3.8) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7184 8apb:B1 (3.8) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7185 8apb:B1 (3.8) BS02 ATP ? GO:0005524 ... Q9GS23 36220811
    7186 8apb:C1 (3.8) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7187 8apb:F1 (3.8) BS01 ATP 7.1.2.2 GO:0005524 ... Q9GPE9 36220811
    7188 8apc:A1 (3.5) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7189 8apc:B1 (3.5) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7190 8apc:B1 (3.5) BS02 ATP ? GO:0005524 ... Q9GS23 36220811
    7191 8apc:C1 (3.5) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7192 8apc:F1 (3.5) BS01 ATP 7.1.2.2 GO:0005524 ... Q9GPE9 36220811
    7193 8apd:A1 (3.7) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7194 8apd:B1 (3.7) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7195 8apd:B1 (3.7) BS02 ATP ? GO:0005524 ... Q9GS23 36220811
    7196 8apd:C1 (3.7) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7197 8apd:F1 (3.7) BS01 ATP 7.1.2.2 GO:0005524 ... Q9GPE9 36220811
    7198 8ape:A1 (3.7) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7199 8ape:B1 (3.7) BS01 ATP ? GO:0005524 ... Q9GS23 36220811
    7200 8ape:B1 (3.7) BS02 ATP ? GO:0005524 ... Q9GS23 36220811

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218