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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6601 7v3x:S (3.1) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6602 7v3x:S (3.1) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6603 7v3x:S (3.1) BS04 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6604 7v3x:T (3.1) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6605 7v3x:T (3.1) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6606 7v3x:T (3.1) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6607 7v3x:T (3.1) BS04 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6608 7v3x:U (3.1) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6609 7v3x:U (3.1) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6610 7v3x:U (3.1) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6611 7v3x:V (3.1) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6612 7v3x:V (3.1) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6613 7v3x:V (3.1) BS03 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6614 7v3x:W (3.1) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6615 7v3x:W (3.1) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6616 7v3x:W (3.1) BS04 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6617 7v3x:X (3.1) BS01 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6618 7v3x:X (3.1) BS02 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6619 7v3x:X (3.1) BS04 ATP 2.7.11.1
    3.6.4.-
    GO:0000287 ... Q79PF4 35427168
    6620 7val:B (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6621 7val:C (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6622 7val:E (3.1) BS01 ATP ? GO:0005515 ... Q56404 35260556
    6623 7vam:B (3.2) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6624 7vam:C (3.2) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6625 7van:B (3.0) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6626 7van:C (3.0) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6627 7van:E (3.0) BS01 ATP ? GO:0005515 ... Q56404 35260556
    6628 7vao:B (3.4) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6629 7vao:C (3.4) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6630 7vap:B (3.0) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6631 7vap:C (3.0) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6632 7vap:E (3.0) BS01 ATP ? GO:0005515 ... Q56404 35260556
    6633 7vaq:B (3.6) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6634 7vaq:C (3.6) BS02 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6635 7vaq:E (3.6) BS01 ATP ? GO:0005515 ... Q56404 35260556
    6636 7var:C (2.9) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6637 7var:E (2.9) BS01 ATP ? GO:0005515 ... Q56404 35260556
    6638 7vas:C (3.0) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6639 7vas:E (3.0) BS01 ATP ? GO:0005515 ... Q56404 35260556
    6640 7vat:C (3.2) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6641 7vat:E (3.2) BS01 ATP ? GO:0005515 ... Q56404 35260556
    6642 7vau:C (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6643 7vav:C (2.8) BS01 ATP 7.1.2.2 GO:0005515 ... Q56403 35260556
    6644 7vav:E (2.8) BS01 ATP ? GO:0005515 ... Q56404 35260556
    6645 7vfp:E (4.03) BS02 ATP 7.6.2.5 GO:0005515 ... P33931 36307425
    6646 7vhv:A (2.55) BS01 ATP 6.2.1.54 GO:0005524 ... P68876 35362466
    6647 7vhv:B (2.55) BS01 ATP 6.2.1.54 GO:0005524 ... P68876 35362466
    6648 7vhv:C (2.55) BS01 ATP 6.2.1.54 GO:0005524 ... P68876 35362466
    6649 7vhv:D (2.55) BS01 ATP 6.2.1.54 GO:0005524 ... P68876 35362466
    6650 7vlr:A (3.4) BS04 ATP ? GO:0000165 ... Q63563 35562524
    6651 7vls:A (3.3) BS04 ATP ? GO:0000165 ... Q63563 35562524
    6652 7vlt:A (3.1) BS05 ATP ? GO:0000165 ... Q63563 35562524
    6653 7vlu:A (3.3) BS03 ATP ? GO:0000165 ... Q63563 35562524
    6654 7vvy:F (3.1) BS01 ATP ? GO:0000785 ... P80428 36198799
    6655 7vvy:G (3.1) BS01 ATP 3.6.4.- GO:0000011 ... P60010 36198799
    6656 7vvz:F (8.8) BS01 ATP ? GO:0000785 ... P80428 36198799
    6657 7vvz:G (8.8) BS01 ATP 3.6.4.- GO:0000011 ... P60010 36198799
    6658 7vx0:A (2.0) BS01 ATP ? GO:0003824 ... Q84G19 36329057
    6659 7vx0:B (2.0) BS01 ATP ? GO:0003824 ... Q84G19 36329057
    6660 7vx8:A (2.8) BS01 ATP 3.1.2.-
    7.6.2.-
    GO:0000038 ... O45730
    P33897
    35676282
    6661 7vx8:A (2.8) BS02 ATP 3.1.2.-
    7.6.2.-
    GO:0000038 ... O45730
    P33897
    35676282
    6662 7vx8:B (2.8) BS01 ATP 3.1.2.-
    7.6.2.-
    GO:0000038 ... O45730
    P33897
    35676282
    6663 7vx8:B (2.8) BS03 ATP 3.1.2.-
    7.6.2.-
    GO:0000038 ... O45730
    P33897
    35676282
    6664 7w02:A (3.3) BS01 ATP 7.6.2.1
    7.6.2.2
    GO:0005319 ... Q99758 35394827
    6665 7w02:A (3.3) BS02 ATP 7.6.2.1
    7.6.2.2
    GO:0005319 ... Q99758 35394827
    6666 7w1y:2 (2.59) BS03 ATP 3.6.4.12 GO:0000727 ... P49736 36608662
    6667 7w1y:3 (2.59) BS02 ATP 3.6.4.12 GO:0000727 ... P25205 36608662
    6668 7w1y:3 (2.59) BS03 ATP 3.6.4.12 GO:0000727 ... P25205 36608662
    6669 7w1y:4 (2.59) BS04 ATP 3.6.4.12 GO:0000727 ... P33991 36608662
    6670 7w1y:5 (2.59) BS02 ATP 3.6.4.12 GO:0000727 ... P33992 36608662
    6671 7w1y:6 (2.59) BS02 ATP 3.6.4.12 GO:0000727 ... Q14566 36608662
    6672 7w1y:7 (2.59) BS02 ATP 3.6.4.12 GO:0000727 ... P33993 36608662
    6673 7w1y:7 (2.59) BS04 ATP 3.6.4.12 GO:0000727 ... P33993 36608662
    6674 7w1y:A (2.59) BS03 ATP 3.6.4.12 GO:0000727 ... P49736 36608662
    6675 7w1y:B (2.59) BS02 ATP 3.6.4.12 GO:0000727 ... P25205 36608662
    6676 7w1y:B (2.59) BS03 ATP 3.6.4.12 GO:0000727 ... P25205 36608662
    6677 7w1y:C (2.59) BS04 ATP 3.6.4.12 GO:0000727 ... P33991 36608662
    6678 7w1y:D (2.59) BS02 ATP 3.6.4.12 GO:0000727 ... P33992 36608662
    6679 7w1y:E (2.59) BS01 ATP 3.6.4.12 GO:0000727 ... Q14566 36608662
    6680 7w1y:F (2.59) BS02 ATP 3.6.4.12 GO:0000727 ... P33993 36608662
    6681 7w1y:F (2.59) BS04 ATP 3.6.4.12 GO:0000727 ... P33993 36608662
    6682 7w37:A (3.0) BS01 ATP ? GO:0000502 ... P35998 35477760
    6683 7w37:B (3.0) BS01 ATP ? GO:0000502 ... P62191 35477760
    6684 7w37:B (3.0) BS02 ATP ? GO:0000502 ... P62191 35477760
    6685 7w37:D (3.0) BS01 ATP ? GO:0000502 ... P43686 35477760
    6686 7w37:E (3.0) BS01 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6687 7w37:E (3.0) BS02 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6688 7w37:F (3.0) BS01 ATP ? GO:0000502 ... P17980 35477760
    6689 7w38:A (3.1) BS01 ATP ? GO:0000502 ... P35998 35477760
    6690 7w38:B (3.1) BS01 ATP ? GO:0000502 ... P62191 35477760
    6691 7w38:B (3.1) BS02 ATP ? GO:0000502 ... P62191 35477760
    6692 7w38:D (3.1) BS01 ATP ? GO:0000502 ... P43686 35477760
    6693 7w38:E (3.1) BS01 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6694 7w38:E (3.1) BS02 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6695 7w38:F (3.1) BS01 ATP ? GO:0000502 ... P17980 35477760
    6696 7w39:A (3.2) BS01 ATP ? GO:0000502 ... P35998 35477760
    6697 7w39:B (3.2) BS01 ATP ? GO:0000502 ... P62191 35477760
    6698 7w39:B (3.2) BS02 ATP ? GO:0000502 ... P62191 35477760
    6699 7w39:C (3.2) BS01 ATP ? GO:0000502 ... P62195 35477760
    6700 7w39:D (3.2) BS01 ATP ? GO:0000502 ... P43686 35477760
    6701 7w39:E (3.2) BS01 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6702 7w39:E (3.2) BS02 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6703 7w39:F (3.2) BS01 ATP ? GO:0000502 ... P17980 35477760
    6704 7w3a:A (3.5) BS02 ATP ? GO:0000502 ... P35998 35477760
    6705 7w3a:C (3.5) BS01 ATP ? GO:0000502 ... P62195 35477760
    6706 7w3a:D (3.5) BS01 ATP ? GO:0000502 ... P43686 35477760
    6707 7w3a:D (3.5) BS02 ATP ? GO:0000502 ... P43686 35477760
    6708 7w3a:E (3.5) BS01 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6709 7w3a:E (3.5) BS02 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6710 7w3a:F (3.5) BS01 ATP ? GO:0000502 ... P17980 35477760
    6711 7w3a:F (3.5) BS02 ATP ? GO:0000502 ... P17980 35477760
    6712 7w3b:C (3.6) BS01 ATP ? GO:0000502 ... P62195 35477760
    6713 7w3b:D (3.6) BS02 ATP ? GO:0000502 ... P43686 35477760
    6714 7w3b:D (3.6) BS03 ATP ? GO:0000502 ... P43686 35477760
    6715 7w3b:E (3.6) BS02 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6716 7w3b:F (3.6) BS02 ATP ? GO:0000502 ... P17980 35477760
    6717 7w3c:B (3.4) BS01 ATP ? GO:0000502 ... P62191 35477760
    6718 7w3c:C (3.4) BS01 ATP ? GO:0000502 ... P62195 35477760
    6719 7w3c:D (3.4) BS01 ATP ? GO:0000502 ... P43686 35477760
    6720 7w3c:E (3.4) BS01 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6721 7w3f:A (3.3) BS01 ATP ? GO:0000502 ... P35998 35477760
    6722 7w3f:B (3.3) BS01 ATP ? GO:0000502 ... P62191 35477760
    6723 7w3f:C (3.3) BS01 ATP ? GO:0000502 ... P62195 35477760
    6724 7w3f:D (3.3) BS01 ATP ? GO:0000502 ... P43686 35477760
    6725 7w3g:A (3.2) BS01 ATP ? GO:0000502 ... P35998 35477760
    6726 7w3g:B (3.2) BS01 ATP ? GO:0000502 ... P62191 35477760
    6727 7w3g:B (3.2) BS02 ATP ? GO:0000502 ... P62191 35477760
    6728 7w3g:C (3.2) BS01 ATP ? GO:0000502 ... P62195 35477760
    6729 7w3g:F (3.2) BS01 ATP ? GO:0000502 ... P17980 35477760
    6730 7w3h:A (3.2) BS01 ATP ? GO:0000502 ... P35998 35477760
    6731 7w3h:A (3.2) BS02 ATP ? GO:0000502 ... P35998 35477760
    6732 7w3h:B (3.2) BS01 ATP ? GO:0000502 ... P62191 35477760
    6733 7w3h:B (3.2) BS02 ATP ? GO:0000502 ... P62191 35477760
    6734 7w3h:C (3.2) BS01 ATP ? GO:0000502 ... P62195 35477760
    6735 7w3h:F (3.2) BS01 ATP ? GO:0000502 ... P17980 35477760
    6736 7w3i:A (3.5) BS01 ATP ? GO:0000502 ... P35998 35477760
    6737 7w3i:A (3.5) BS02 ATP ? GO:0000502 ... P35998 35477760
    6738 7w3i:B (3.5) BS01 ATP ? GO:0000502 ... P62191 35477760
    6739 7w3i:D (3.5) BS01 ATP ? GO:0000502 ... P43686 35477760
    6740 7w3i:E (3.5) BS01 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6741 7w3i:E (3.5) BS02 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6742 7w3i:F (3.5) BS01 ATP ? GO:0000502 ... P17980 35477760
    6743 7w3i:F (3.5) BS02 ATP ? GO:0000502 ... P17980 35477760
    6744 7w3j:A (3.5) BS01 ATP ? GO:0000502 ... P35998 35477760
    6745 7w3j:A (3.5) BS02 ATP ? GO:0000502 ... P35998 35477760
    6746 7w3j:B (3.5) BS01 ATP ? GO:0000502 ... P62191 35477760
    6747 7w3j:D (3.5) BS01 ATP ? GO:0000502 ... P43686 35477760
    6748 7w3j:E (3.5) BS01 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6749 7w3j:E (3.5) BS02 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6750 7w3j:F (3.5) BS01 ATP ? GO:0000502 ... P17980 35477760
    6751 7w3j:F (3.5) BS02 ATP ? GO:0000502 ... P17980 35477760
    6752 7w3k:E (3.6) BS01 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6753 7w3k:F (3.6) BS01 ATP ? GO:0000502 ... P17980 35477760
    6754 7w3k:F (3.6) BS02 ATP ? GO:0000502 ... P17980 35477760
    6755 7w3m:C (3.5) BS01 ATP ? GO:0000502 ... P62195 35477760
    6756 7w3m:D (3.5) BS01 ATP ? GO:0000502 ... P43686 35477760
    6757 7w3m:D (3.5) BS02 ATP ? GO:0000502 ... P43686 35477760
    6758 7w3m:E (3.5) BS01 ATP ? GO:0000502 ... A0A087X2I1 35477760
    6759 7w4o:B (2.96) BS04 ATP ? GO:0001508 ... A0A1U7R319 35589716
    6760 7w4o:D (2.96) BS04 ATP ? GO:0001508 ... A0A1U7R319 35589716
    6761 7w4o:F (2.96) BS04 ATP ? GO:0001508 ... A0A1U7R319 35589716
    6762 7w4o:H (2.96) BS04 ATP ? GO:0001508 ... A0A1U7R319 35589716
    6763 7w4p:B (3.19) BS04 ATP ? GO:0001508 ... A0A1U7R319 35589716
    6764 7w4p:D (3.19) BS04 ATP ? GO:0001508 ... A0A1U7R319 35589716
    6765 7w4p:F (3.19) BS04 ATP ? GO:0001508 ... A0A1U7R319 35589716
    6766 7w4p:H (3.19) BS04 ATP ? GO:0001508 ... A0A1U7R319 35589716
    6767 7w52:A (2.001) BS01 ATP 3.6.4.- GO:0001725 ... P68139 36252034
    6768 7w52:C (2.001) BS01 ATP 3.6.4.- GO:0001725 ... P68139 36252034
    6769 7w52:E (2.001) BS01 ATP 3.6.4.- GO:0001725 ... P68139 36252034
    6770 7w52:G (2.001) BS01 ATP 3.6.4.- GO:0001725 ... P68139 36252034
    6771 7w59:Q (3.6) BS01 ATP 3.6.4.13 GO:0000398 ... O60306 35705093
    6772 7w5a:Q (3.6) BS01 ATP 3.6.4.13 GO:0000398 ... O60306 35705093
    6773 7w5b:Q (4.3) BS01 ATP 3.6.4.13 GO:0000398 ... O60306 35705093
    6774 7w79:A (3.1) BS01 ATP ? GO:0005524 ... Q6NEF2 35767641
    6775 7waj:A (2.254) BS01 ATP 6.1.1.17 GO:0000166 ... Q8IDK7 36370911
    6776 7wbb:A (3.6) BS02 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6777 7wbb:A (3.6) BS03 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6778 7wbb:B (3.6) BS02 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6779 7wbb:B (3.6) BS03 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6780 7wbb:C (3.6) BS02 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6781 7wbb:C (3.6) BS03 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6782 7wbb:C (3.6) BS04 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6783 7wbb:C (3.6) BS05 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6784 7wbb:D (3.6) BS02 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6785 7wbb:D (3.6) BS03 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6786 7wbb:D (3.6) BS04 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6787 7wbb:D (3.6) BS05 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6788 7wbb:E (3.6) BS02 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6789 7wbb:E (3.6) BS03 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6790 7wbb:E (3.6) BS04 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6791 7wbb:E (3.6) BS05 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6792 7wbb:F (3.6) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6793 7wd3:A (3.8) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6794 7wd3:A (3.8) BS03 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6795 7wd3:B (3.8) BS02 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6796 7wd3:B (3.8) BS04 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6797 7wd3:C (3.8) BS01 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6798 7wd3:C (3.8) BS03 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6799 7wd3:D (3.8) BS02 ATP 3.6.4.10 GO:0005515 ... P32794 36351914
    6800 7wd3:D (3.8) BS04 ATP 3.6.4.10 GO:0005515 ... P32794 36351914

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218