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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    6201 7t3i:C (4.3) BS03 ATP ? GO:0003723 ... G0RZG1 36090660
    6202 7t3i:C (4.3) BS04 ATP ? GO:0003723 ... G0RZG1 36090660
    6203 7t3i:C (4.3) BS05 ATP ? GO:0003723 ... G0RZG1 36090660
    6204 7t3i:D (4.3) BS01 ATP ? GO:0003723 ... G0RZG1 36090660
    6205 7t3i:D (4.3) BS02 ATP ? GO:0003723 ... G0RZG1 36090660
    6206 7t3i:D (4.3) BS03 ATP ? GO:0003723 ... G0RZG1 36090660
    6207 7t3i:E (4.3) BS02 ATP ? GO:0003723 ... G0RZG1 36090660
    6208 7t3p:A (3.2) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6209 7t3p:B (3.2) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6210 7t3p:C (3.2) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6211 7t3p:D (3.2) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6212 7t3q:A (3.3) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6213 7t3q:B (3.3) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6214 7t3q:C (3.3) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6215 7t3q:D (3.3) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6216 7t3r:A (3.4) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6217 7t3r:B (3.4) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6218 7t3r:C (3.4) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6219 7t3r:D (3.4) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6220 7t3t:A (3.8) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6221 7t3t:B (3.8) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6222 7t3t:C (3.8) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6223 7t3t:D (3.8) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6224 7t3u:A (3.7) BS02 ATP ? GO:0000822 ... Q14573 35301323
    6225 7t3u:B (3.7) BS02 ATP ? GO:0000822 ... Q14573 35301323
    6226 7t3u:C (3.7) BS02 ATP ? GO:0000822 ... Q14573 35301323
    6227 7t3u:D (3.7) BS03 ATP ? GO:0000822 ... Q14573 35301323
    6228 7t4t:A (2.08) BS02 ATP 2.7.11.12 GO:0004672 ... Q13976 N/A
    6229 7t4t:B (2.08) BS02 ATP 2.7.11.12 GO:0004672 ... Q13976 N/A
    6230 7t54:A (4.5) BS01 ATP ? GO:0005515 ... A3DCU1 35074919
    6231 7t54:A (4.5) BS02 ATP ? GO:0005515 ... A3DCU1 35074919
    6232 7t54:B (4.5) BS01 ATP ? GO:0005515 ... A3DCU1 35074919
    6233 7t54:B (4.5) BS02 ATP ? GO:0005515 ... A3DCU1 35074919
    6234 7t55:A (4.1) BS02 ATP ? GO:0005515 ... A3DCU1 35074919
    6235 7t55:B (4.1) BS02 ATP ? GO:0005515 ... A3DCU1 35074919
    6236 7t56:A (3.7) BS02 ATP ? GO:0005515 ... A3DCU1 35074919
    6237 7t56:B (3.7) BS02 ATP ? GO:0005515 ... A3DCU1 35074919
    6238 7t57:A (3.7) BS02 ATP ? GO:0005515 ... A3DCU1 35074919
    6239 7t57:B (3.7) BS02 ATP ? GO:0005515 ... A3DCU1 35074919
    6240 7t5q:A (3.4) BS01 ATP ? GO:0003779 ... P61157 N/A
    6241 7t5q:B (3.4) BS01 ATP ? GO:0003779 ... A7MB62 N/A
    6242 7t65:A (4.05) BS01 ATP ? GO:0003151 ... P11716 35867837
    6243 7t65:B (4.05) BS01 ATP ? GO:0003151 ... P11716 35867837
    6244 7t65:C (4.05) BS01 ATP ? GO:0003151 ... P11716 35867837
    6245 7t65:D (4.05) BS01 ATP ? GO:0003151 ... P11716 35867837
    6246 7tbw:A (3.1) BS02 ATP 7.6.2.1 GO:0002790 ... O95477 37181814
    6247 7tbw:A (3.1) BS03 ATP 7.6.2.1 GO:0002790 ... O95477 37181814
    6248 7tch:B (3.7) BS01 ATP ? GO:0005524 ... O34697 35349335
    6249 7tch:B (3.7) BS02 ATP ? GO:0005524 ... O34697 35349335
    6250 7tch:C (3.7) BS01 ATP ? GO:0005524 ... O34697 35349335
    6251 7tch:C (3.7) BS02 ATP ? GO:0005524 ... O34697 35349335
    6252 7tgk:A (2.3) BS01 ATP N/A GO:0019290 ... N/A 35750210
    6253 7tgk:B (2.3) BS01 ATP N/A GO:0019290 ... N/A 35750210
    6254 7tgk:C (2.3) BS01 ATP N/A GO:0019290 ... N/A 35750210
    6255 7tgk:D (2.3) BS01 ATP N/A GO:0019290 ... N/A 35750210
    6256 7tgk:E (2.3) BS01 ATP N/A GO:0019290 ... N/A 35750210
    6257 7tjf:A (2.6) BS03 ATP ? GO:0003677 ... P54784 35217664
    6258 7tjf:D (2.6) BS02 ATP ? GO:0000808 ... P54791 35217664
    6259 7tjf:D (2.6) BS03 ATP ? GO:0000808 ... P54791 35217664
    6260 7tjf:E (2.6) BS03 ATP ? GO:0000808 ... P50874 35217664
    6261 7tjh:A (2.5) BS03 ATP ? GO:0003677 ... P54784 35217664
    6262 7tjh:D (2.5) BS02 ATP ? GO:0000808 ... P54791 35217664
    6263 7tjh:E (2.5) BS03 ATP ? GO:0000808 ... P50874 35217664
    6264 7tjh:I (2.5) BS03 ATP ? GO:0000082 ... P09119 35217664
    6265 7tji:A (2.7) BS03 ATP ? GO:0003677 ... P54784 35217664
    6266 7tji:D (2.7) BS02 ATP ? GO:0000808 ... P54791 35217664
    6267 7tji:D (2.7) BS03 ATP ? GO:0000808 ... P54791 35217664
    6268 7tji:E (2.7) BS03 ATP ? GO:0000808 ... P50874 35217664
    6269 7tji:I (2.7) BS01 ATP ? GO:0000082 ... P09119 35217664
    6270 7tjj:A (2.7) BS03 ATP ? GO:0003677 ... P54784 35217664
    6271 7tjj:D (2.7) BS02 ATP ? GO:0000808 ... P54791 35217664
    6272 7tjj:E (2.7) BS03 ATP ? GO:0000808 ... P50874 35217664
    6273 7tjj:I (2.7) BS02 ATP ? GO:0000082 ... P09119 35217664
    6274 7tjk:A (2.7) BS03 ATP ? GO:0003677 ... P54784 35217664
    6275 7tjk:D (2.7) BS02 ATP ? GO:0000808 ... P54791 35217664
    6276 7tjk:E (2.7) BS03 ATP ? GO:0000808 ... P50874 35217664
    6277 7tjk:I (2.7) BS01 ATP ? GO:0000082 ... P09119 35217664
    6278 7tjs:A (3.2) BS01 ATP ? GO:0005524 ... N/A 35468906
    6279 7tjs:B (3.2) BS01 ATP ? GO:0005524 ... N/A 35468906
    6280 7tjs:C (3.2) BS01 ATP ? GO:0005524 ... N/A 35468906
    6281 7tjt:A (3.2) BS01 ATP ? GO:0005524 ... P07251 35468906
    6282 7tjt:B (3.2) BS01 ATP ? GO:0005524 ... P07251 35468906
    6283 7tjt:C (3.2) BS01 ATP ? GO:0005524 ... P07251 35468906
    6284 7tju:A (3.3) BS01 ATP ? GO:0005524 ... P07251 35468906
    6285 7tju:B (3.3) BS01 ATP ? GO:0005524 ... P07251 35468906
    6286 7tju:C (3.3) BS01 ATP ? GO:0005524 ... P07251 35468906
    6287 7tju:D (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P00830 35468906
    6288 7tju:E (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P00830 35468906
    6289 7tjv:A (3.6) BS01 ATP ? GO:0005524 ... P07251 35468906
    6290 7tjv:B (3.6) BS01 ATP ? GO:0005524 ... P07251 35468906
    6291 7tjv:C (3.6) BS01 ATP ? GO:0005524 ... P07251 35468906
    6292 7tjv:F (3.6) BS01 ATP 7.1.2.2 GO:0005515 ... P00830 35468906
    6293 7tjw:A (4.0) BS01 ATP ? GO:0005524 ... P07251 35468906
    6294 7tjw:B (4.0) BS01 ATP ? GO:0005524 ... P07251 35468906
    6295 7tjw:B (4.0) BS03 ATP ? GO:0005524 ... P07251 35468906
    6296 7tjw:C (4.0) BS01 ATP ? GO:0005524 ... P07251 35468906
    6297 7tjw:D (4.0) BS01 ATP 7.1.2.2 GO:0005515 ... P00830 35468906
    6298 7tjw:F (4.0) BS01 ATP 7.1.2.2 GO:0005515 ... P00830 35468906
    6299 7tjx:A (4.0) BS01 ATP ? GO:0005524 ... P07251 35468906
    6300 7tjx:B (4.0) BS01 ATP ? GO:0005524 ... P07251 35468906
    6301 7tjx:B (4.0) BS02 ATP ? GO:0005524 ... P07251 35468906
    6302 7tjx:C (4.0) BS01 ATP ? GO:0005524 ... P07251 35468906
    6303 7tjx:F (4.0) BS01 ATP 7.1.2.2 GO:0005515 ... P00830 35468906
    6304 7tmo:A (3.3) BS01 ATP 3.1.-.-
    7.1.2.2    		 GO:0005524 ... P17255 35469063
    6305 7tmo:B (3.3) BS01 ATP ? GO:0000139 ... P16140 35469063
    6306 7to3:C (2.74) BS02 ATP 2.7.7.- GO:0005524 ... P0DSP4 36755092
    6307 7to3:D (2.74) BS02 ATP 2.7.7.- GO:0005524 ... P0DSP4 36755092
    6308 7tqd:C (2.9) BS03 ATP 2.7.7.- GO:0005524 ... P0DSP4 36755092
    6309 7tve:D (3.8) BS02 ATP ? GO:0000724 ... Q12749 35648833
    6310 7tve:E (3.8) BS01 ATP ? GO:0000724 ... Q08204 35648833
    6311 7txu:A (2.6) BS05 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6312 7txu:A (2.6) BS06 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6313 7txu:B (2.6) BS05 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6314 7txu:B (2.6) BS06 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6315 7txu:C (2.6) BS05 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6316 7txu:C (2.6) BS06 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6317 7txu:D (2.6) BS05 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6318 7txu:D (2.6) BS06 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6319 7txv:A (2.7) BS05 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6320 7txv:A (2.7) BS06 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6321 7txv:B (2.7) BS05 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6322 7txv:B (2.7) BS06 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6323 7txv:C (2.7) BS05 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6324 7txv:C (2.7) BS06 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6325 7txv:D (2.7) BS05 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6326 7txv:D (2.7) BS06 ATP 6.3.2.29
    6.3.2.30    		 GO:0005524 ... A0A068N621 N/A
    6327 7tys:A (3.41) BS01 ATP ? GO:0001508 ... P70673 35964676
    6328 7tys:B (3.41) BS01 ATP ? GO:0001508 ... P70673 35964676
    6329 7tys:C (3.41) BS01 ATP ? GO:0001508 ... P70673 35964676
    6330 7tys:D (3.41) BS01 ATP ? GO:0001508 ... P70673 35964676
    6331 7tys:D (3.41) BS03 ATP ? GO:0001508 ... P70673 35964676
    6332 7tys:E (3.41) BS04 ATP ? GO:0005267 ... Q09427 35964676
    6333 7tyt:A (3.6) BS01 ATP ? GO:0001508 ... P70673 35964676
    6334 7tyt:A (3.6) BS02 ATP ? GO:0001508 ... P70673 35964676
    6335 7tyt:B (3.6) BS01 ATP ? GO:0001508 ... P70673 35964676
    6336 7tyt:B (3.6) BS03 ATP ? GO:0001508 ... P70673 35964676
    6337 7tyt:C (3.6) BS01 ATP ? GO:0001508 ... P70673 35964676
    6338 7tyt:C (3.6) BS02 ATP ? GO:0001508 ... P70673 35964676
    6339 7tyt:D (3.6) BS01 ATP ? GO:0001508 ... P70673 35964676
    6340 7tyt:D (3.6) BS02 ATP ? GO:0001508 ... P70673 35964676
    6341 7tyt:E (3.6) BS02 ATP ? GO:0005267 ... Q09427 35964676
    6342 7tzc:A (2.45) BS01 ATP ? GO:0003151 ... P11716 35580609
    6343 7tzc:A (2.45) BS05 ATP ? GO:0003151 ... P11716 35580609
    6344 7tzc:B (2.45) BS01 ATP ? GO:0003151 ... P11716 35580609
    6345 7tzc:B (2.45) BS05 ATP ? GO:0003151 ... P11716 35580609
    6346 7tzc:G (2.45) BS02 ATP ? GO:0003151 ... P11716 35580609
    6347 7tzc:G (2.45) BS06 ATP ? GO:0003151 ... P11716 35580609
    6348 7tzc:I (2.45) BS02 ATP ? GO:0003151 ... P11716 35580609
    6349 7tzc:I (2.45) BS06 ATP ? GO:0003151 ... P11716 35580609
    6350 7u1e:A (4.52) BS01 ATP ? GO:0001508 ... P70673 35964676
    6351 7u1e:B (4.52) BS01 ATP ? GO:0001508 ... P70673 35964676
    6352 7u1e:C (4.52) BS01 ATP ? GO:0001508 ... P70673 35964676
    6353 7u1e:C (4.52) BS02 ATP ? GO:0001508 ... P70673 35964676
    6354 7u1e:D (4.52) BS01 ATP ? GO:0001508 ... P70673 35964676
    6355 7u1e:D (4.52) BS02 ATP ? GO:0001508 ... P70673 35964676
    6356 7u1e:E (4.52) BS01 ATP ? GO:0005267 ... Q09427 35964676
    6357 7u1q:A (3.9) BS01 ATP ? GO:0001508 ... P70673 35964676
    6358 7u1q:A (3.9) BS03 ATP ? GO:0001508 ... P70673 35964676
    6359 7u1q:B (3.9) BS01 ATP ? GO:0001508 ... P70673 35964676
    6360 7u1q:B (3.9) BS03 ATP ? GO:0001508 ... P70673 35964676
    6361 7u1q:C (3.9) BS01 ATP ? GO:0001508 ... P70673 35964676
    6362 7u1q:C (3.9) BS03 ATP ? GO:0001508 ... P70673 35964676
    6363 7u1q:D (3.9) BS01 ATP ? GO:0001508 ... P70673 35964676
    6364 7u1q:E (3.9) BS03 ATP ? GO:0005267 ... Q09427 35964676
    6365 7u1s:A (3.8) BS01 ATP ? GO:0001508 ... P70673 35964676
    6366 7u1s:B (3.8) BS01 ATP ? GO:0001508 ... P70673 35964676
    6367 7u1s:C (3.8) BS01 ATP ? GO:0001508 ... P70673 35964676
    6368 7u1s:C (3.8) BS03 ATP ? GO:0001508 ... P70673 35964676
    6369 7u1s:D (3.8) BS01 ATP ? GO:0001508 ... P70673 35964676
    6370 7u1s:D (3.8) BS03 ATP ? GO:0001508 ... P70673 35964676
    6371 7u1s:E (3.8) BS04 ATP ? GO:0005267 ... Q09427 35964676
    6372 7u24:A (3.58) BS01 ATP ? GO:0001508 ... P70673 35964676
    6373 7u24:A (3.58) BS03 ATP ? GO:0001508 ... P70673 35964676
    6374 7u24:B (3.58) BS01 ATP ? GO:0001508 ... P70673 35964676
    6375 7u24:C (3.58) BS01 ATP ? GO:0001508 ... P70673 35964676
    6376 7u24:D (3.58) BS03 ATP ? GO:0001508 ... P70673 35964676
    6377 7u24:E (3.58) BS03 ATP ? GO:0005267 ... Q09427 35964676
    6378 7u2x:E (4.1) BS02 ATP ? GO:0005267 ... Q09427 35964676
    6379 7u6y:A (7.4) BS01 ATP ? GO:0001508 ... P70673 35964676
    6380 7u6y:B (7.4) BS01 ATP ? GO:0001508 ... P70673 35964676
    6381 7u6y:B (7.4) BS02 ATP ? GO:0001508 ... P70673 35964676
    6382 7u6y:C (7.4) BS01 ATP ? GO:0001508 ... P70673 35964676
    6383 7u6y:C (7.4) BS02 ATP ? GO:0001508 ... P70673 35964676
    6384 7u6y:D (7.4) BS01 ATP ? GO:0001508 ... P70673 35964676
    6385 7u6y:E (7.4) BS01 ATP ? GO:0005267 ... Q09427 35964676
    6386 7u7m:E (5.2) BS01 ATP ? GO:0005267 ... Q09427 35964676
    6387 7u9k:B (2.0) BS03 ATP 6.3.2.4 GO:0003824 ... Q2FWH3 37948922
    6388 7u9q:A (3.11) BS02 ATP ? GO:0001666 ... Q92736 35857850
    6389 7u9q:B (3.11) BS02 ATP ? GO:0001666 ... Q92736 35857850
    6390 7u9q:C (3.11) BS02 ATP ? GO:0001666 ... Q92736 35857850
    6391 7u9q:D (3.11) BS02 ATP ? GO:0001666 ... Q92736 35857850
    6392 7u9r:A (3.69) BS02 ATP ? GO:0001666 ... Q92736 35857850
    6393 7u9r:A (3.69) BS04 ATP ? GO:0001666 ... Q92736 35857850
    6394 7u9r:B (3.69) BS02 ATP ? GO:0001666 ... Q92736 35857850
    6395 7u9r:B (3.69) BS04 ATP ? GO:0001666 ... Q92736 35857850
    6396 7u9r:C (3.69) BS02 ATP ? GO:0001666 ... Q92736 35857850
    6397 7u9r:C (3.69) BS04 ATP ? GO:0001666 ... Q92736 35857850
    6398 7u9r:D (3.69) BS02 ATP ? GO:0001666 ... Q92736 35857850
    6399 7u9r:D (3.69) BS04 ATP ? GO:0001666 ... Q92736 35857850
    6400 7u9t:A (2.68) BS02 ATP ? GO:0001666 ... Q92736 35857850
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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