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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5801 7qxw:E (4.1) BS01 ATP ? GO:0000502 ... P62333 37595557
    5802 7qxw:F (4.1) BS02 ATP ? GO:0000502 ... P17980 37595557
    5803 7qxx:A (4.4) BS01 ATP ? GO:0000502 ... P35998 37595557
    5804 7qxx:B (4.4) BS01 ATP ? GO:0000502 ... P62191 37595557
    5805 7qxx:B (4.4) BS02 ATP ? GO:0000502 ... P62191 37595557
    5806 7qxx:D (4.4) BS01 ATP ? GO:0000502 ... P43686 37595557
    5807 7qxx:E (4.4) BS01 ATP ? GO:0000502 ... P62333 37595557
    5808 7qxx:E (4.4) BS02 ATP ? GO:0000502 ... P62333 37595557
    5809 7qxx:F (4.4) BS01 ATP ? GO:0000502 ... P17980 37595557
    5810 7qy7:A (4.7) BS01 ATP ? GO:0000502 ... P35998 37595557
    5811 7qy7:B (4.7) BS01 ATP ? GO:0000502 ... P62191 37595557
    5812 7qy7:C (4.7) BS01 ATP ? GO:0000502 ... P62195 37595557
    5813 7qy7:C (4.7) BS02 ATP ? GO:0000502 ... P62195 37595557
    5814 7qy7:D (4.7) BS01 ATP ? GO:0000502 ... P43686 37595557
    5815 7qy7:D (4.7) BS02 ATP ? GO:0000502 ... P43686 37595557
    5816 7qy7:E (4.7) BS01 ATP ? GO:0000502 ... P62333 37595557
    5817 7qya:A (4.8) BS01 ATP ? GO:0000502 ... P35998 37595557
    5818 7qya:D (4.8) BS01 ATP ? GO:0000502 ... P43686 37595557
    5819 7qya:E (4.8) BS01 ATP ? GO:0000502 ... P62333 37595557
    5820 7qya:E (4.8) BS02 ATP ? GO:0000502 ... P62333 37595557
    5821 7qya:F (4.8) BS01 ATP ? GO:0000502 ... P17980 37595557
    5822 7qya:F (4.8) BS02 ATP ? GO:0000502 ... P17980 37595557
    5823 7qyb:A (4.1) BS01 ATP ? GO:0000502 ... P35998 37595557
    5824 7qyb:B (4.1) BS01 ATP ? GO:0000502 ... P62191 37595557
    5825 7qyb:C (4.1) BS01 ATP ? GO:0000502 ... P62195 37595557
    5826 7qyb:C (4.1) BS02 ATP ? GO:0000502 ... P62195 37595557
    5827 7qyb:D (4.1) BS01 ATP ? GO:0000502 ... P43686 37595557
    5828 7qyb:F (4.1) BS01 ATP ? GO:0000502 ... P17980 37595557
    5829 7r2y:A (2.15) BS01 ATP ? GO:0005886 ... P73954 36800386
    5830 7r2y:A (2.15) BS02 ATP ? GO:0005886 ... P73954 36800386
    5831 7r2y:B (2.15) BS01 ATP ? GO:0005886 ... P73954 36800386
    5832 7r2y:B (2.15) BS02 ATP ? GO:0005886 ... P73954 36800386
    5833 7r2y:C (2.15) BS01 ATP ? GO:0005886 ... P73954 36800386
    5834 7r2y:C (2.15) BS02 ATP ? GO:0005886 ... P73954 36800386
    5835 7r2z:A (2.4) BS02 ATP ? GO:0005886 ... P73954 36800386
    5836 7r2z:C (2.4) BS02 ATP ? GO:0005886 ... P73954 36800386
    5837 7r31:A (1.52) BS01 ATP ? GO:0005886 ... P73954 36800386
    5838 7r31:A (1.52) BS02 ATP ? GO:0005886 ... P73954 36800386
    5839 7r31:B (1.52) BS01 ATP ? GO:0005886 ... P73954 36800386
    5840 7r31:B (1.52) BS02 ATP ? GO:0005886 ... P73954 36800386
    5841 7r31:C (1.52) BS01 ATP ? GO:0005886 ... P73954 36800386
    5842 7r31:C (1.52) BS02 ATP ? GO:0005886 ... P73954 36800386
    5843 7r8e:A (3.7) BS01 ATP 7.6.2.- GO:0000139 ... P45844 34404721
    5844 7r8e:A (3.7) BS04 ATP 7.6.2.- GO:0000139 ... P45844 34404721
    5845 7r8e:B (3.7) BS01 ATP 7.6.2.- GO:0000139 ... P45844 34404721
    5846 7r8e:B (3.7) BS02 ATP 7.6.2.- GO:0000139 ... P45844 34404721
    5847 7rak:A (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5848 7rak:B (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5849 7rak:C (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5850 7rak:D (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5851 7rak:E (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5852 7rak:F (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5853 7rak:G (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5854 7rak:H (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5855 7rak:I (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5856 7rak:J (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5857 7rak:K (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5858 7rak:L (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5859 7rak:M (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5860 7rak:N (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5861 7rak:O (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5862 7rak:U (3.9) BS01 ATP ? GO:0005524 ... Q877G8 34362932
    5863 7rav:A (3.3) BS01 ATP ? GO:0005515 ... Q9R016 36604500
    5864 7rax:A (1.41) BS01 ATP ? GO:0005524 ... P0A6Y8 34453889
    5865 7rci:A (2.12) BS01 ATP 3.1.-.- GO:0005524 ... P54278 35189042
    5866 7rci:B (2.12) BS01 ATP 3.1.-.- GO:0005524 ... P54278 35189042
    5867 7rck:A (2.04) BS01 ATP 3.1.-.- GO:0005524 ... P54278 35189042
    5868 7rck:B (2.04) BS01 ATP 3.1.-.- GO:0005524 ... P54278 35189042
    5869 7res:A (3.05) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5870 7res:A (3.05) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5871 7res:B (3.05) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5872 7res:B (3.05) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5873 7res:C (3.05) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5874 7res:C (3.05) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5875 7res:D (3.05) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5876 7res:D (3.05) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5877 7res:E (3.05) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5878 7res:E (3.05) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5879 7res:F (3.05) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5880 7res:F (3.05) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5881 7res:G (3.05) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5882 7res:G (3.05) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5883 7res:H (3.05) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5884 7res:H (3.05) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5885 7rfe:A (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5886 7rfe:B (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5887 7rfe:C (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5888 7rfe:D (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5889 7rfe:E (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5890 7rfe:F (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5891 7rfe:G (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5892 7rfe:H (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5893 7rfg:A (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5894 7rfg:B (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5895 7rfg:C (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5896 7rfg:D (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5897 7rfg:E (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5898 7rfg:F (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5899 7rfg:G (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5900 7rfg:H (2.6) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5901 7rfh:A (3.7) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5902 7rfh:A (3.7) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5903 7rfh:B (3.7) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5904 7rfh:B (3.7) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5905 7rfh:C (3.7) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5906 7rfh:C (3.7) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5907 7rfh:D (3.7) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5908 7rfh:D (3.7) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5909 7rfh:E (3.7) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5910 7rfh:E (3.7) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5911 7rfh:F (3.7) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5912 7rfh:F (3.7) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5913 7rfh:G (3.7) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5914 7rfh:G (3.7) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5915 7rfh:H (3.7) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5916 7rfh:H (3.7) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5917 7rgd:A (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... Q5H9Q6 35013599
    5918 7rgd:B (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... Q5H9Q6 35013599
    5919 7rgd:C (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... Q5H9Q6 35013599
    5920 7rgd:C (3.0) BS06 ATP 1.1.1.205 GO:0000166 ... Q5H9Q6 35013599
    5921 7rgd:D (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... Q5H9Q6 35013599
    5922 7rgd:E (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... Q5H9Q6 35013599
    5923 7rgd:F (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... Q5H9Q6 35013599
    5924 7rgd:G (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... Q5H9Q6 35013599
    5925 7rgd:H (3.0) BS03 ATP 1.1.1.205 GO:0000166 ... Q5H9Q6 35013599
    5926 7rgm:A (2.8) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5927 7rgm:A (2.8) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5928 7rgm:A (2.8) BS05 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5929 7rgm:B (2.8) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5930 7rgm:B (2.8) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5931 7rgm:B (2.8) BS05 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5932 7rgm:C (2.8) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5933 7rgm:C (2.8) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5934 7rgm:D (2.8) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5935 7rgm:D (2.8) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5936 7rgm:E (2.8) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5937 7rgm:E (2.8) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5938 7rgm:F (2.8) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5939 7rgm:F (2.8) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5940 7rgm:G (2.8) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5941 7rgm:G (2.8) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5942 7rgm:H (2.8) BS01 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5943 7rgm:H (2.8) BS02 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5944 7rgq:A (3.9) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5945 7rgq:B (3.9) BS05 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5946 7rgq:C (3.9) BS05 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5947 7rgq:C (3.9) BS07 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5948 7rgq:D (3.9) BS05 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5949 7rgq:E (3.9) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5950 7rgq:F (3.9) BS05 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5951 7rgq:G (3.9) BS05 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5952 7rgq:H (3.9) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 35013599
    5953 7rkh:A (2.8) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5954 7rkh:B (2.8) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5955 7rkh:C (2.8) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5956 7rkh:D (2.8) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5957 7rl0:A (2.8) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5958 7rl0:B (2.8) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5959 7rl0:C (2.8) BS04 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5960 7rl0:D (2.8) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5961 7rl0:E (2.8) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5962 7rl0:F (2.8) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5963 7rl0:G (2.8) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5964 7rl0:H (2.8) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5965 7rl0:W (2.8) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5966 7rl0:X (2.8) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5967 7rl0:Y (2.8) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5968 7rl0:Z (2.8) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5969 7rmk:A (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5970 7rmk:B (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5971 7rmk:C (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5972 7rmk:D (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5973 7rmk:E (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5974 7rmk:F (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5975 7rmk:G (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5976 7rmk:H (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5977 7rmk:I (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5978 7rmk:J (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5979 7rmk:K (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5980 7rmk:L (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5981 7rmk:M (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5982 7rmk:N (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5983 7rmk:O (6.6) BS03 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5984 7rmk:P (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5985 7rmk:Q (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5986 7rmk:R (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5987 7rmk:S (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5988 7rmk:T (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5989 7rmk:U (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5990 7rmk:V (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5991 7rmk:W (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5992 7rmk:X (6.6) BS02 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5993 7rmk:Y (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5994 7rmk:Z (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5995 7rmk:a (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5996 7rmk:b (6.6) BS01 ATP 6.3.4.2 GO:0003883 ... N/A 34734801
    5997 7rmv:A (6.7) BS02 ATP 6.3.4.2 GO:0000324 ... P28274 34734801
    5998 7rmv:B (6.7) BS01 ATP 6.3.4.2 GO:0000324 ... P28274 34734801
    5999 7rmv:C (6.7) BS02 ATP 6.3.4.2 GO:0000324 ... P28274 34734801
    6000 7rmv:D (6.7) BS01 ATP 6.3.4.2 GO:0000324 ... P28274 34734801

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218