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BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5201 7ln0:C (2.98) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5202 7ln0:C (2.98) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5203 7ln0:C (2.98) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5204 7ln0:C (2.98) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5205 7ln0:D (2.98) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5206 7ln0:D (2.98) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5207 7ln0:D (2.98) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5208 7ln0:D (2.98) BS06 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5209 7ln0:E (2.98) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5210 7ln0:E (2.98) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5211 7ln0:F (2.98) BS01 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5212 7ln1:B (3.4) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5213 7ln1:B (3.4) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5214 7ln1:C (3.4) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5215 7ln1:C (3.4) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5216 7ln1:C (3.4) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5217 7ln1:D (3.4) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5218 7ln1:D (3.4) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5219 7ln1:D (3.4) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5220 7ln1:D (3.4) BS06 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5221 7ln1:E (3.4) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5222 7ln1:E (3.4) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5223 7ln1:F (3.4) BS01 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5224 7ln2:A (3.63) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5225 7ln2:B (3.63) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5226 7ln2:B (3.63) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5227 7ln2:B (3.63) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5228 7ln2:C (3.63) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5229 7ln2:C (3.63) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5230 7ln2:C (3.63) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5231 7ln2:D (3.63) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5232 7ln2:D (3.63) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5233 7ln2:D (3.63) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5234 7ln2:D (3.63) BS06 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5235 7ln2:E (3.63) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5236 7ln2:E (3.63) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5237 7ln3:A (3.45) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5238 7ln3:B (3.45) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5239 7ln3:B (3.45) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5240 7ln3:B (3.45) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5241 7ln3:C (3.45) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5242 7ln3:C (3.45) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5243 7ln3:C (3.45) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5244 7ln3:C (3.45) BS06 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5245 7ln3:D (3.45) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5246 7ln3:D (3.45) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5247 7ln3:D (3.45) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5248 7ln3:E (3.45) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5249 7ln3:E (3.45) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5250 7ln4:A (3.0) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5251 7ln4:B (3.0) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5252 7ln4:B (3.0) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5253 7ln4:B (3.0) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5254 7ln4:C (3.0) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5255 7ln4:C (3.0) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5256 7ln4:C (3.0) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5257 7ln4:C (3.0) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5258 7ln4:D (3.0) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5259 7ln4:D (3.0) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5260 7ln4:D (3.0) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5261 7ln4:D (3.0) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5262 7ln4:E (3.0) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5263 7ln4:E (3.0) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5264 7ln4:F (3.0) BS01 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5265 7ln5:A (3.09) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5266 7ln5:B (3.09) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5267 7ln5:B (3.09) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5268 7ln5:C (3.09) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5269 7ln5:C (3.09) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5270 7ln5:C (3.09) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5271 7ln5:D (3.09) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5272 7ln5:D (3.09) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5273 7ln5:D (3.09) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5274 7ln5:D (3.09) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5275 7ln5:E (3.09) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5276 7ln5:E (3.09) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5277 7ln5:F (3.09) BS01 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5278 7ln6:A (3.58) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5279 7ln6:B (3.58) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5280 7ln6:B (3.58) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5281 7ln6:C (3.58) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5282 7ln6:C (3.58) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5283 7ln6:D (3.58) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5284 7ln6:D (3.58) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5285 7ln6:D (3.58) BS04 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5286 7ln6:D (3.58) BS05 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5287 7ln6:E (3.58) BS02 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5288 7ln6:E (3.58) BS03 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5289 7ln6:F (3.58) BS01 ATP 3.6.4.6 GO:0000502 ... P55072 34262183
    5290 7lnu:A (2.5) BS03 ATP 2.7.4.26 GO:0005524 ... M9SEQ1 34905349
    5291 7m1t:A (3.26) BS02 ATP ? N/A A0A1G8XA46 34188059
    5292 7m1t:B (3.26) BS01 ATP ? N/A A0A1G8XA46 34188059
    5293 7m1t:B (3.26) BS02 ATP ? N/A A0A1G8XA46 34188059
    5294 7m33:C (3.55) BS01 ATP 7.6.2.- GO:0005524 ... O07550 34931066
    5295 7m33:D (3.55) BS01 ATP 7.6.2.- GO:0005524 ... O07549 34931066
    5296 7m6a:A (3.36) BS01 ATP ? GO:0003151 ... P11716 34469755
    5297 7m6a:B (3.36) BS01 ATP ? GO:0003151 ... P11716 34469755
    5298 7m6a:G (3.36) BS01 ATP ? GO:0003151 ... P11716 34469755
    5299 7m6a:I (3.36) BS01 ATP ? GO:0003151 ... P11716 34469755
    5300 7m6l:A (3.98) BS01 ATP ? GO:0003151 ... P11716 34469755
    5301 7m6l:B (3.98) BS01 ATP ? GO:0003151 ... P11716 34469755
    5302 7m6l:G (3.98) BS01 ATP ? GO:0003151 ... P11716 34469755
    5303 7m6l:I (3.98) BS01 ATP ? GO:0003151 ... P11716 34469755
    5304 7m74:G (3.93) BS01 ATP ? GO:0004672 ... P54619 34437114
    5305 7md2:A (3.1) BS01 ATP ? GO:0005524 ... N/A N/A
    5306 7md2:B (3.1) BS01 ATP ? GO:0005524 ... N/A N/A
    5307 7md2:C (3.1) BS01 ATP ? GO:0005524 ... N/A N/A
    5308 7md3:A (3.3) BS01 ATP ? GO:0005524 ... N/A N/A
    5309 7md3:B (3.3) BS01 ATP ? GO:0005524 ... N/A N/A
    5310 7md3:C (3.3) BS01 ATP ? GO:0005524 ... N/A N/A
    5311 7mgm:A (3.1) BS01 ATP ? GO:0005524 ... P36022 34994688
    5312 7mgm:A (3.1) BS02 ATP ? GO:0005524 ... P36022 34994688
    5313 7mgm:A (3.1) BS03 ATP ? GO:0005524 ... P36022 34994688
    5314 7mi3:A (3.5) BS03 ATP ?
    3.2.1.17
    GO:0003796 ... P00720
    P36022
    34015309
    5315 7mi6:A (3.9) BS03 ATP ?
    3.2.1.17
    GO:0003796 ... P00720
    P36022
    34015309
    5316 7mir:A (2.5) BS04 ATP 6.-.-.- N/A Q5ZTK6 34407442
    5317 7mis:A (2.8) BS01 ATP 6.-.-.- N/A Q5ZTK6 34407442
    5318 7mit:A (3.4) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5319 7mit:A (3.4) BS03 ATP ? GO:0001508 ... Q63664 34711681
    5320 7mit:B (3.4) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5321 7mit:B (3.4) BS02 ATP ? GO:0001508 ... Q63664 34711681
    5322 7mit:C (3.4) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5323 7mit:C (3.4) BS02 ATP ? GO:0001508 ... Q63664 34711681
    5324 7mit:D (3.4) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5325 7mit:E (3.4) BS01 ATP ? GO:0000165 ... Q63563 34711681
    5326 7mjo:A (4.0) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5327 7mjo:B (4.0) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5328 7mjo:B (4.0) BS02 ATP ? GO:0001508 ... Q63664 34711681
    5329 7mjo:C (4.0) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5330 7mjo:D (4.0) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5331 7mjo:E (4.0) BS01 ATP ? GO:0000165 ... Q63563 34711681
    5332 7mjp:A (4.2) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5333 7mjp:A (4.2) BS02 ATP ? GO:0001508 ... Q63664 34711681
    5334 7mjp:B (4.2) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5335 7mjp:D (4.2) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5336 7mjp:E (4.2) BS01 ATP ? GO:0000165 ... Q63563 34711681
    5337 7mjq:A (4.2) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5338 7mjq:B (4.2) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5339 7mjq:C (4.2) BS01 ATP ? GO:0001508 ... Q63664 34711681
    5340 7mjq:E (4.2) BS01 ATP ? GO:0000165 ... Q63563 34711681
    5341 7moq:C (8.0) BS02 ATP ? GO:0005524 ... Q22A67 34338432
    5342 7mq8:NH (3.6) BS02 ATP ? GO:0000794 ... Q9H6R4 34516797
    5343 7mq8:NK (3.6) BS01 ATP 2.3.1.- GO:0000049 ... Q9H0A0 34516797
    5344 7mq9:NK (3.87) BS01 ATP 2.3.1.- GO:0000049 ... Q9H0A0 34516797
    5345 7mqa:NH (2.7) BS02 ATP ? GO:0000794 ... Q9H6R4 34516797
    5346 7msu:A (2.07) BS01 ATP ? N/A A0A1G8XA46 34188059
    5347 7n6i:D (3.9) BS01 ATP N/A N/A N/A 34385391
    5348 7n6i:E (3.9) BS01 ATP N/A N/A N/A 34385391
    5349 7n6i:F (3.9) BS01 ATP N/A N/A N/A 34385391
    5350 7n6i:G (3.9) BS01 ATP N/A N/A N/A 34385391
    5351 7n6i:H (3.9) BS01 ATP N/A N/A N/A 34385391
    5352 7n6i:I (3.9) BS01 ATP N/A N/A N/A 34385391
    5353 7n6i:J (3.9) BS01 ATP N/A N/A N/A 34385391
    5354 7n74:A (2.8) BS01 ATP 7.6.2.- GO:0000166 ... Q9NQ11 34715013
    5355 7ng4:A (4.4) BS01 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5356 7ng4:B (4.4) BS02 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5357 7ng4:C (4.4) BS02 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5358 7ng4:D (4.4) BS02 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5359 7ng4:F (4.4) BS01 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5360 7ng5:A (3.8) BS02 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5361 7ng5:B (3.8) BS01 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5362 7ng5:C (3.8) BS01 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5363 7ng5:D (3.8) BS02 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5364 7ng5:E (3.8) BS01 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5365 7ng5:F (3.8) BS01 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5366 7ngf:A (5.6) BS02 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5367 7ngf:B (5.6) BS01 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5368 7ngf:D (5.6) BS01 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5369 7ngf:E (5.6) BS01 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5370 7ngf:F (5.6) BS02 ATP 3.4.21.53 GO:0004176 ... P36776 35870450
    5371 7nhk:0 (2.9) BS04 ATP N/A GO:0005524 ... N/A 34117249
    5372 7nhk:0 (2.9) BS05 ATP N/A GO:0005524 ... N/A 34117249
    5373 7nhl:0 (3.1) BS06 ATP ? GO:0005524 ... A0SNL9 34117249
    5374 7nhl:0 (3.1) BS07 ATP ? GO:0005524 ... A0SNL9 34117249
    5375 7nhn:0 (2.9) BS04 ATP ? GO:0005524 ... Q8Y8I3 34117249
    5376 7nhn:0 (2.9) BS05 ATP ? GO:0005524 ... Q8Y8I3 34117249
    5377 7njk:A (2.52) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5378 7njk:B (2.52) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5379 7njk:B (2.52) BS02 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5380 7njk:C (2.52) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5381 7njk:F (2.52) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 34782468
    5382 7njl:A (2.71) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5383 7njl:B (2.71) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5384 7njl:B (2.71) BS02 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5385 7njl:C (2.71) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5386 7njl:F (2.71) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 34782468
    5387 7njm:A (2.84) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5388 7njm:B (2.84) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5389 7njm:B (2.84) BS02 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5390 7njm:C (2.84) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5391 7njm:F (2.84) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 34782468
    5392 7njn:A (2.64) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5393 7njn:B (2.64) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5394 7njn:B (2.64) BS02 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5395 7njn:C (2.64) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5396 7njn:F (2.64) BS01 ATP 7.1.2.2 GO:0005524 ... A0R200 34782468
    5397 7njo:A (2.92) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5398 7njo:B (2.92) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5399 7njo:B (2.92) BS02 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468
    5400 7njo:C (2.92) BS01 ATP 7.1.2.2 GO:0005524 ... A0R202 34782468

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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