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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4601 6w24:D (3.4) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4602 6w24:E (3.4) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4603 6w24:E (3.4) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4604 6w7v:A (1.7) BS01 ATP 3.6.4.- GO:0000287 ... P68135 33938740
    4605 6wa8:A (3.3) BS01 ATP 3.6.4.- GO:0003676 ... P0AG30 32880587
    4606 6wa8:B (3.3) BS01 ATP 3.6.4.- GO:0003676 ... P0AG30 32880587
    4607 6wa8:C (3.3) BS01 ATP 3.6.4.- GO:0003676 ... P0AG30 32880587
    4608 6wa8:C (3.3) BS02 ATP 3.6.4.- GO:0003676 ... P0AG30 32880587
    4609 6wa8:D (3.3) BS01 ATP 3.6.4.- GO:0003676 ... P0AG30 32880587
    4610 6wa8:E (3.3) BS01 ATP 3.6.4.- GO:0003676 ... P0AG30 32880587
    4611 6wa8:F (3.3) BS01 ATP 3.6.4.- GO:0003676 ... P0AG30 32880587
    4612 6wb4:A (2.593) BS02 ATP N/A GO:0016301 ... N/A 34819672
    4613 6wb4:B (2.593) BS03 ATP N/A GO:0016301 ... N/A 34819672
    4614 6wbs:A (1.857) BS01 ATP 5.6.1.6 GO:0005524 ... P13569 N/A
    4615 6wbs:B (1.857) BS01 ATP 5.6.1.6 GO:0005524 ... P13569 N/A
    4616 6wnq:A (3.4) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    4617 6wnq:B (3.4) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    4618 6wnq:C (3.4) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    4619 6wnq:E (3.4) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    4620 6wnr:A (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    4621 6wnr:B (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    4622 6wnr:C (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    4623 6wnr:E (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    4624 6x2n:A (3.9) BS03 ATP 3.6.4.- GO:0000716 ... P30958 33480355
    4625 6x43:A (3.6) BS03 ATP 3.6.4.- GO:0000716 ... P30958 33480355
    4626 6x50:A (3.3) BS03 ATP 3.6.4.- GO:0000716 ... P30958 33480355
    4627 6xhj:A (3.62) BS01 ATP ? GO:0005515 ... Q9V2T8 N/A
    4628 6xrc:A (2.45) BS01 ATP ? GO:0005524 ... Q9L069 32885650
    4629 6xrc:B (2.45) BS01 ATP ? GO:0005524 ... Q9L069 32885650
    4630 6xxq:A (3.0) BS02 ATP 2.7.7.47 GO:0005524 ... Q07448 32253216
    4631 6xxq:B (3.0) BS02 ATP 2.7.7.47 GO:0005524 ... Q07448 32253216
    4632 6y8c:A (1.76) BS03 ATP 2.7.11.11 GO:0000287 ... P25321 N/A
    4633 6yar:A (1.9) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    4634 6yar:A (1.9) BS03 ATP ? GO:0005524 ... P0DP92 33563593
    4635 6yar:B (1.9) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    4636 6yar:B (1.9) BS03 ATP ? GO:0005524 ... P0DP92 33563593
    4637 6yay:A (2.09) BS01 ATP ? GO:0005524 ... P0DP92 33563593
    4638 6yay:A (2.09) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    4639 6yay:B (2.09) BS01 ATP ? GO:0005524 ... P0DP92 33563593
    4640 6yay:B (2.09) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    4641 6yb3:A (1.59) BS01 ATP ? GO:0005524 ... P0DP92 33563593
    4642 6yb3:A (1.59) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    4643 6yb3:B (1.59) BS01 ATP ? GO:0005524 ... P0DP92 33563593
    4644 6yb3:B (1.59) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    4645 6yb5:A (1.59) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    4646 6yb5:A (1.59) BS03 ATP ? GO:0005524 ... P0DP92 33563593
    4647 6yb5:B (1.59) BS03 ATP ? GO:0005524 ... P0DP92 33563593
    4648 6yb5:B (1.59) BS04 ATP ? GO:0005524 ... P0DP92 33563593
    4649 6ybb:A (2.9) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    4650 6ybb:A (2.9) BS03 ATP ? GO:0005524 ... P0DP92 33563593
    4651 6ybb:B (2.9) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    4652 6ybu:A (2.49) BS03 ATP ? GO:0005524 ... P0DP92 33563593
    4653 6ybu:A (2.49) BS04 ATP ? GO:0005524 ... P0DP92 33563593
    4654 6ybu:B (2.49) BS03 ATP ? GO:0005524 ... P0DP92 33563593
    4655 6ybu:B (2.49) BS04 ATP ? GO:0005524 ... P0DP92 33563593
    4656 6ybu:G (2.49) BS01 ATP ? GO:0005524 ... P0DP92 33563593
    4657 6ybu:G (2.49) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    4658 6ybu:H (2.49) BS01 ATP ? GO:0005524 ... P0DP92 33563593
    4659 6ybu:H (2.49) BS02 ATP ? GO:0005524 ... P0DP92 33563593
    4660 6yii:A (1.44) BS01 ATP 4.6.1.26 GO:0000166 ... P0DV40 32454240
    4661 6ynx:G (2.5) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    4662 6ynx:H (2.5) BS01 ATP ? N/A I7MCZ0 33093501
    4663 6ynx:K (2.5) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    4664 6ynx:g (2.5) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    4665 6ynx:h (2.5) BS01 ATP ? N/A I7MCZ0 33093501
    4666 6ynx:k (2.5) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    4667 6yny:A1 (2.7) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    4668 6yny:A2 (2.7) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    4669 6yny:B1 (2.7) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4670 6yny:B2 (2.7) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4671 6yny:C1 (2.7) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4672 6yny:C2 (2.7) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4673 6yny:G (2.7) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    4674 6yny:H (2.7) BS01 ATP ? N/A I7MCZ0 33093501
    4675 6yny:K (2.7) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    4676 6yny:g (2.7) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    4677 6yny:h (2.7) BS01 ATP ? N/A I7MCZ0 33093501
    4678 6yny:k (2.7) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    4679 6ynz:A1 (3.1) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    4680 6ynz:A2 (3.1) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    4681 6ynz:A4 (3.1) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    4682 6ynz:A5 (3.1) BS02 ATP ? GO:0005524 ... Q24HY8 33093501
    4683 6ynz:B1 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4684 6ynz:B2 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4685 6ynz:B4 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4686 6ynz:B5 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4687 6ynz:C1 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4688 6ynz:C2 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4689 6ynz:C4 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4690 6ynz:C5 (3.1) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4691 6ynz:E1 (3.1) BS02 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    4692 6ynz:E2 (3.1) BS02 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    4693 6ynz:E4 (3.1) BS02 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    4694 6ynz:F1 (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    4695 6ynz:F2 (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    4696 6ynz:F4 (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    4697 6ynz:F5 (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... I7LZV1 33093501
    4698 6ynz:G (3.1) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    4699 6ynz:G3 (3.1) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    4700 6ynz:H (3.1) BS01 ATP ? N/A I7MCZ0 33093501
    4701 6ynz:H3 (3.1) BS01 ATP ? N/A I7MCZ0 33093501
    4702 6ynz:K (3.1) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    4703 6ynz:K3 (3.1) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    4704 6ynz:g (3.1) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    4705 6ynz:g3 (3.1) BS01 ATP ? GO:0016020 ... I7M8Q3 33093501
    4706 6ynz:h (3.1) BS01 ATP ? N/A I7MCZ0 33093501
    4707 6ynz:h3 (3.1) BS01 ATP ? N/A I7MCZ0 33093501
    4708 6ynz:k (3.1) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    4709 6ynz:k3 (3.1) BS01 ATP ? GO:0016020 ... I7LSX6 33093501
    4710 6yo0:A1 (2.9) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4711 6yo0:B1 (2.9) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4712 6yo0:C1 (2.9) BS01 ATP ? GO:0005524 ... Q24HY8 33093501
    4713 6yp9:A (2.564) BS01 ATP 3.6.4.- GO:0000287 ... P68135 33483497
    4714 6yt3:A (2.85) BS01 ATP ? GO:0005737 ... P84308 34587504
    4715 6yt3:B (2.85) BS01 ATP ? GO:0005737 ... P84253 34587504
    4716 6yw5:XX (2.85) BS02 ATP ? GO:0003735 ... Q7SD06 33056988
    4717 6yw6:A (4.2) BS01 ATP ? GO:0003779 ... P61158 32661131
    4718 6yw6:B (4.2) BS01 ATP ? GO:0003779 ... P61160 32661131
    4719 6yw7:A (4.5) BS01 ATP ? GO:0003779 ... P61158 32661131
    4720 6yw7:B (4.5) BS01 ATP ? GO:0003779 ... P61160 32661131
    4721 6ywe:XX (2.99) BS04 ATP ? GO:0003735 ... Q7SD06 33056988
    4722 6ywx:XX (3.1) BS02 ATP ? GO:0003735 ... Q7SD06 33056988
    4723 6ywy:XX (3.05) BS02 ATP ? GO:0003735 ... Q7SD06 33056988
    4724 6yx3:A (1.22) BS02 ATP 6.3.2.6 GO:0004639 ... B1MHW4 35037462
    4725 6yxx:EB (3.9) BS02 ATP ? GO:0003676 ... D0A9G9 32679035
    4726 6yxy:EB (3.1) BS02 ATP ? GO:0003676 ... D0A9G9 32679035
    4727 6yy0:A (3.23) BS01 ATP ? GO:0005515 ... P19483 32900941
    4728 6yy0:B (3.23) BS01 ATP ? GO:0005515 ... P19483 32900941
    4729 6yy0:C (3.23) BS01 ATP ? GO:0005515 ... P19483 32900941
    4730 6z1p:Bw (3.7) BS02 ATP ? GO:0003735 ... Q22RT0 32553108
    4731 6z1r:A (3.29) BS01 ATP ? GO:0005515 ... P19483 32900941
    4732 6z1r:B (3.29) BS01 ATP ? GO:0005515 ... P19483 32900941
    4733 6z1r:C (3.29) BS01 ATP ? GO:0005515 ... P19483 32900941
    4734 6z1r:E (3.29) BS01 ATP 7.1.2.2 GO:0005515 ... P00829 32900941
    4735 6z1u:A (3.47) BS02 ATP ? GO:0005515 ... P19483 32900941
    4736 6z1u:B (3.47) BS01 ATP ? GO:0005515 ... P19483 32900941
    4737 6z1u:C (3.47) BS01 ATP ? GO:0005515 ... P19483 32900941
    4738 6z1u:E (3.47) BS01 ATP 7.1.2.2 GO:0005515 ... P00829 32900941
    4739 6z3r:C (2.97) BS01 ATP ? GO:0000184 ... Q9H0W8 32469312
    4740 6zce:k (5.3) BS03 ATP ? GO:0000054 ... Q03195 33289941
    4741 6ze1:A (2.705) BS01 ATP 5.6.1.6 GO:0005524 ... P13569 34341587
    4742 6zhu:A (3.18) BS01 ATP 6.2.1.45 GO:0004839 ... P22515 N/A
    4743 6zhu:C (3.18) BS01 ATP 6.2.1.45 GO:0004839 ... P22515 N/A
    4744 6zhu:E (3.18) BS01 ATP 6.2.1.45 GO:0004839 ... P22515 N/A
    4745 6zhu:G (3.18) BS01 ATP 6.2.1.45 GO:0004839 ... P22515 N/A
    4746 6zjd:A (1.75) BS01 ATP 2.7.4.10 GO:0004017 ... Q9UIJ7 32822537 MOAD: Kd=13uM
    4747 6zm5:AX (2.89) BS02 ATP ? GO:0003723 ... P51398 33602856
    4748 6zm6:AX (2.59) BS02 ATP ? GO:0003723 ... P51398 33602856
    4749 6znl:H (3.8) BS01 ATP 3.6.4.- GO:0005515 ... Q6QAQ1 33734450
    4750 6znm:H (4.1) BS01 ATP 3.6.4.- GO:0005515 ... Q6QAQ1 33734450
    4751 6znn:H (4.5) BS01 ATP 3.6.4.- GO:0005515 ... Q6QAQ1 33734450
    4752 6zno:H (6.8) BS01 ATP 3.6.4.- GO:0005515 ... Q6QAQ1 33734450
    4753 6zo4:H (8.2) BS01 ATP 3.6.4.- GO:0005515 ... Q6QAQ1 33734450
    4754 6zpo:A (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    4755 6zpo:B (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    4756 6zpo:C (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    4757 6zqm:A (3.29) BS01 ATP ? GO:0005515 ... P19483 32900941
    4758 6zqm:B (3.29) BS01 ATP ? GO:0005515 ... P19483 32900941
    4759 6zqm:C (3.29) BS01 ATP ? GO:0005515 ... P19483 32900941
    4760 6zqm:E (3.29) BS01 ATP 7.1.2.2 GO:0005515 ... P00829 32900941
    4761 6zqn:A (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    4762 6zqn:B (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    4763 6zqn:C (4.0) BS01 ATP ? GO:0005515 ... P19483 32900941
    4764 6zqn:E (4.0) BS01 ATP 7.1.2.2 GO:0005515 ... P00829 32900941
    4765 6zr2:O (3.1) BS01 ATP ? GO:0005739 ... Q99LC3 33067417
    4766 6zsp:AAA (1.6) BS03 ATP 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    4767 6zsp:AAA (1.6) BS04 ATP 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    4768 6zsp:BBB (1.6) BS03 ATP 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    4769 6zsp:BBB (1.6) BS04 ATP 4.3.1.17
    4.3.1.18
    5.1.1.18    		 GO:0000287 ... Q9GZT4 35410329
    4770 6ztq:O (3.0) BS01 ATP ? GO:0005739 ... Q99LC3 33067417
    4771 6zu9:k (6.2) BS03 ATP ? GO:0000054 ... Q03195 33289941
    4772 6zvj:1 (3.8) BS05 ATP 3.6.5.- GO:0000054 ... P61221 33289941
    4773 6zxf:z (3.7) BS04 ATP 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    4774 6zxg:z (2.6) BS03 ATP 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    4775 6zxh:z (2.7) BS03 ATP 2.7.11.1
    3.6.3.-    		 GO:0004674 ... Q9BRS2 33208940
    4776 6zyw:C (8.78) BS02 ATP ? GO:0005524 ... Q22A67 33632841
    4777 6zyy:C (4.4) BS02 ATP ? GO:0005524 ... Q22A67 33632841
    4778 6zz6:A (3.4) BS02 ATP ? GO:0005524 ... P32908 32930661
    4779 6zz6:A (3.4) BS04 ATP ? GO:0005524 ... P32908 32930661
    4780 6zz6:B (3.4) BS02 ATP ? GO:0005524 ... P47037 32930661
    4781 6zz6:B (3.4) BS03 ATP ? GO:0005524 ... P47037 32930661
    4782 7a09:J (3.5) BS05 ATP 3.6.5.- GO:0000054 ... P61221 33289941
    4783 7abr:A (3.7) BS04 ATP ? GO:0005515 ... P37571 35662409
    4784 7abr:B (3.7) BS02 ATP ? GO:0005515 ... P37571 35662409
    4785 7abr:C (3.7) BS02 ATP ? GO:0005515 ... P37571 35662409
    4786 7abr:C (3.7) BS03 ATP ? GO:0005515 ... P37571 35662409
    4787 7abr:D (3.7) BS02 ATP ? GO:0005515 ... P37571 35662409
    4788 7abr:D (3.7) BS03 ATP ? GO:0005515 ... P37571 35662409
    4789 7abr:D (3.7) BS04 ATP ? GO:0005515 ... P37571 35662409
    4790 7abr:E (3.7) BS02 ATP ? GO:0005515 ... P37571 35662409
    4791 7abr:E (3.7) BS03 ATP ? GO:0005515 ... P37571 35662409
    4792 7agj:A (2.7) BS01 ATP 1.17.4.1 GO:0004748 ... O66503 34941255
    4793 7agj:A (2.7) BS02 ATP 1.17.4.1 GO:0004748 ... O66503 34941255
    4794 7agj:B (2.7) BS01 ATP 1.17.4.1 GO:0004748 ... O66503 34941255
    4795 7agj:B (2.7) BS02 ATP 1.17.4.1 GO:0004748 ... O66503 34941255
    4796 7ahd:C (3.4) BS01 ATP 7.6.2.9 GO:0005524 ... Q9KIF7 33208376
    4797 7ahd:C (3.4) BS02 ATP 7.6.2.9 GO:0005524 ... Q9KIF7 33208376
    4798 7ahd:D (3.4) BS01 ATP 7.6.2.9 GO:0005524 ... Q9KIF7 33208376
    4799 7ahd:D (3.4) BS02 ATP 7.6.2.9 GO:0005524 ... Q9KIF7 33208376
    4800 7ai5:A (4.4) BS02 ATP ? GO:0000018 ... P23909 33820992
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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