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I-TASSER I-TASSER-MTD C-I-TASSER CR-I-TASSER QUARK C-QUARK LOMETS MUSTER CEthreader SEGMER DeepFold DeepFoldRNA FoldDesign COFACTOR COACH MetaGO TripletGO IonCom FG-MD ModRefiner REMO DEMO DEMO-EM DMFold SPRING COTH Threpp PEPPI BSpred ANGLOR EDock BSP-SLIM SAXSTER FUpred ThreaDom ThreaDomEx EvoDesign BindProf BindProfX SSIPe GPCR-I-TASSER MAGELLAN ResQ STRUM DAMpred

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BioLiP E. coli GLASS GPCR-HGmod GPCR-RD GPCR-EXP Tara-3D TM-fold DECOYS POTENTIAL RW/RWplus EvoEF HPSF THE-DB ADDRESS Alpaca-Antibody CASP7 CASP8 CASP9 CASP10 CASP11 CASP12 CASP13 CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4401 6udo:D (3.21) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4402 6udo:E (3.21) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4403 6udo:F (3.21) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4404 6udo:G (3.21) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4405 6udo:H (3.21) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4406 6udq:A (3.27) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4407 6udq:B (3.27) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4408 6udq:B (3.27) BS06 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4409 6udq:C (3.27) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4410 6udq:D (3.27) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4411 6udq:E (3.27) BS01 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4412 6udq:F (3.27) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4413 6udq:G (3.27) BS01 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4414 6udq:H (3.27) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4415 6ugd:A (3.5) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4416 6ugd:B (3.5) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4417 6ugd:B (3.5) BS03 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4418 6ugd:C (3.5) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4419 6ugd:D (3.5) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4420 6ugd:E (3.5) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4421 6ugd:E (3.5) BS03 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4422 6ugd:F (3.5) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4423 6ugd:F (3.5) BS03 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4424 6uge:B (3.6) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4425 6uge:C (3.6) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4426 6uge:D (3.6) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4427 6uge:D (3.6) BS03 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4428 6uge:E (3.6) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4429 6uge:F (3.6) BS01 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4430 6uge:F (3.6) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4431 6ugf:B (4.2) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4432 6ugf:C (4.2) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4433 6ugf:D (4.2) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4434 6ugf:E (4.2) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4435 6ugf:F (4.2) BS01 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4436 6ugf:F (4.2) BS02 ATP 5.6.1.1 GO:0000212 ... P34808 31735665
    4437 6uhc:A (3.9) BS03 ATP ? GO:0003779 ... P61158 32548263
    4438 6uhc:B (3.9) BS02 ATP ? GO:0003779 ... P61160 32548263
    4439 6uhh:A (3.138) BS01 ATP ? GO:0005219 ... Q15413 N/A
    4440 6uhh:B (3.138) BS01 ATP ? GO:0005219 ... Q15413 N/A
    4441 6uk1:A (2.693) BS01 ATP 5.6.1.6 GO:0005524 ... P13569 N/A
    4442 6uk1:B (2.693) BS01 ATP 5.6.1.6 GO:0005524 ... P13569 N/A
    4443 6uk1:C (2.693) BS01 ATP 5.6.1.6 GO:0005524 ... P13569 N/A
    4444 6uk1:D (2.693) BS01 ATP 5.6.1.6 GO:0005524 ... P13569 N/A
    4445 6uuc:CCC (4.096) BS04 ATP 2.7.7.6 GO:0000345 ... P0A8V2 32829286
    4446 6uuc:DDD (4.096) BS06 ATP 2.7.7.6 GO:0000287 ... P0A8T7 32829286
    4447 6uy0:A (3.23) BS01 ATP 7.6.2.2
    7.6.2.3
    GO:0005524 ... Q8HXQ5 32458799
    4448 6v2l:A (1.7) BS01 ATP 4.1.1.49 GO:0000287 ... P22259 31911238
    4449 6v2m:A (1.66) BS01 ATP 4.1.1.49 GO:0000287 ... P22259 31911238
    4450 6vfs:B (3.3) BS02 ATP ? GO:0005524 ... Q9JYY3 31916936
    4451 6vfs:C (3.3) BS02 ATP ? GO:0005524 ... Q9JYY3 31916936
    4452 6vfs:C (3.3) BS04 ATP ? GO:0005524 ... Q9JYY3 31916936
    4453 6vfs:D (3.3) BS01 ATP ? GO:0005524 ... Q9JYY3 31916936
    4454 6vfs:D (3.3) BS02 ATP ? GO:0005524 ... Q9JYY3 31916936
    4455 6vfs:E (3.3) BS02 ATP ? GO:0005524 ... Q9JYY3 31916936
    4456 6vfs:E (3.3) BS04 ATP ? GO:0005524 ... Q9JYY3 31916936
    4457 6vfx:A (2.9) BS02 ATP ? GO:0005524 ... Q9JYY3 31916936
    4458 6vfx:B (2.9) BS02 ATP ? GO:0005524 ... Q9JYY3 31916936
    4459 6vfx:B (2.9) BS04 ATP ? GO:0005524 ... Q9JYY3 31916936
    4460 6vfx:C (2.9) BS02 ATP ? GO:0005524 ... Q9JYY3 31916936
    4461 6vfx:C (2.9) BS04 ATP ? GO:0005524 ... Q9JYY3 31916936
    4462 6vfx:D (2.9) BS02 ATP ? GO:0005524 ... Q9JYY3 31916936
    4463 6vfx:D (2.9) BS03 ATP ? GO:0005524 ... Q9JYY3 31916936
    4464 6vfx:E (2.9) BS01 ATP ? GO:0005524 ... Q9JYY3 31916936
    4465 6vmb:A (5.23) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4466 6vmb:B (5.23) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4467 6vmb:C (5.23) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4468 6vmb:D (5.23) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4469 6vmb:E (5.23) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4470 6vmb:F (5.23) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4471 6vmd:A (4.53) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4472 6vmd:B (4.53) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4473 6vmd:C (4.53) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4474 6vmd:D (4.53) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4475 6vmd:E (4.53) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4476 6vof:A (4.51) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4477 6vof:A (4.51) BS02 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4478 6vof:B (4.51) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4479 6vof:C (4.51) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4480 6vof:E (4.51) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4481 6vof:F (4.51) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4482 6vog:A (4.35) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4483 6vog:A (4.35) BS02 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4484 6vog:B (4.35) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4485 6vog:C (4.35) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4486 6vog:E (4.35) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4487 6vog:F (4.35) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4488 6vog:F (4.35) BS02 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4489 6voh:A (4.16) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4490 6voh:B (4.16) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4491 6voh:C (4.16) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4492 6voh:D (4.16) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4493 6voh:D (4.16) BS02 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4494 6voi:A (4.03) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4495 6voi:B (4.03) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4496 6voi:C (4.03) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4497 6voi:D (4.03) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4498 6voi:D (4.03) BS02 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4499 6voi:E (4.03) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4500 6voj:A (4.34) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4501 6voj:B (4.34) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4502 6voj:C (4.34) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4503 6voj:D (4.34) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4504 6voj:E (4.34) BS02 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4505 6vok:A (3.85) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4506 6vok:B (3.85) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4507 6vok:C (3.85) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4508 6vok:E (3.85) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4509 6vol:A (4.06) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4510 6vol:A (4.06) BS03 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4511 6vol:B (4.06) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4512 6vol:C (4.06) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4513 6vol:F (4.06) BS02 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4514 6vom:A (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4515 6vom:A (3.6) BS03 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4516 6vom:B (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4517 6vom:C (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4518 6vom:F (3.6) BS02 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4519 6von:A (3.35) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4520 6von:B (3.35) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4521 6von:C (3.35) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4522 6von:D (3.35) BS02 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4523 6voo:A (3.05) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4524 6voo:B (3.05) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4525 6voo:C (3.05) BS01 ATP 7.1.2.2 GO:0005524 ... P06450 32879423
    4526 6voo:D (3.05) BS02 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4527 6voo:E (3.05) BS01 ATP 7.1.2.2 GO:0005524 ... P00825 32879423
    4528 6vt6:A (1.969) BS01 ATP ? GO:0005524 ... D2W2Z5 32315072
    4529 6vt9:A (2.49) BS01 ATP ? GO:0005524 ... D2W2Z5 32315072
    4530 6vtb:A (1.547) BS01 ATP ? GO:0005524 ... D2W2Z5 32315072
    4531 6vtd:A (2.4) BS01 ATP ? GO:0005524 ... D2W2Z5 32315072
    4532 6vz4:L (3.9) BS01 ATP ? GO:0000785 ... Q12406 33288924
    4533 6vzg:L (4.2) BS01 ATP ? GO:0000785 ... Q12406 33288924
    4534 6vzt:A (2.18) BS01 ATP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    4535 6vzt:B (2.18) BS01 ATP 6.3.2.- GO:0036211 ... A4Q9E8 32747782
    4536 6w17:A (3.9) BS01 ATP ? GO:0003779 ... P32390 32839613
    4537 6w17:B (3.9) BS01 ATP ? GO:0000147 ... Q9UUJ1 32839613
    4538 6w18:A (4.2) BS01 ATP ? GO:0003779 ... P32390 32839613
    4539 6w18:B (4.2) BS01 ATP ? GO:0000147 ... Q9UUJ1 32839613
    4540 6w1z:A (2.7) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4541 6w1z:A (2.7) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4542 6w1z:B (2.7) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4543 6w1z:B (2.7) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4544 6w1z:B (2.7) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4545 6w1z:C (2.7) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4546 6w1z:C (2.7) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4547 6w1z:C (2.7) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4548 6w1z:D (2.7) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4549 6w1z:D (2.7) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4550 6w1z:E (2.7) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4551 6w20:B (3.0) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4552 6w20:B (3.0) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4553 6w20:B (3.0) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4554 6w20:C (3.0) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4555 6w20:C (3.0) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4556 6w20:C (3.0) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4557 6w20:D (3.0) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4558 6w20:D (3.0) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4559 6w20:E (3.0) BS01 ATP ? GO:0004176 ... P0ABH9 32313240
    4560 6w20:E (3.0) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4561 6w21:A (3.3) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4562 6w21:B (3.3) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4563 6w21:B (3.3) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4564 6w21:C (3.3) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4565 6w21:C (3.3) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4566 6w21:C (3.3) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4567 6w21:C (3.3) BS05 ATP ? GO:0004176 ... P0ABH9 32313240
    4568 6w21:D (3.3) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4569 6w21:D (3.3) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4570 6w21:E (3.3) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4571 6w21:E (3.3) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4572 6w22:A (3.0) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4573 6w22:A (3.0) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4574 6w22:B (3.0) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4575 6w22:B (3.0) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4576 6w22:B (3.0) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4577 6w22:C (3.0) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4578 6w22:C (3.0) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4579 6w22:C (3.0) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4580 6w22:D (3.0) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4581 6w22:D (3.0) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4582 6w22:E (3.0) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4583 6w23:B (3.1) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4584 6w23:B (3.1) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4585 6w23:B (3.1) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4586 6w23:C (3.1) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4587 6w23:C (3.1) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4588 6w23:C (3.1) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4589 6w23:D (3.1) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4590 6w23:D (3.1) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4591 6w23:E (3.1) BS01 ATP ? GO:0004176 ... P0ABH9 32313240
    4592 6w23:E (3.1) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4593 6w24:A (3.4) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4594 6w24:B (3.4) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4595 6w24:B (3.4) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4596 6w24:C (3.4) BS02 ATP ? GO:0004176 ... P0ABH9 32313240
    4597 6w24:C (3.4) BS03 ATP ? GO:0004176 ... P0ABH9 32313240
    4598 6w24:C (3.4) BS04 ATP ? GO:0004176 ... P0ABH9 32313240
    4599 6w24:C (3.4) BS05 ATP ? GO:0004176 ... P0ABH9 32313240
    4600 6w24:D (3.4) BS02 ATP ? GO:0004176 ... P0ABH9 32313240

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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