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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4201 6s7p:A (3.2) BS01 ATP 7.6.2.1 GO:0005515 ... P21439 31873305
    4202 6s7p:A (3.2) BS02 ATP 7.6.2.1 GO:0005515 ... P21439 31873305
    4203 6sc2:A (3.9) BS02 ATP ?
    2.1.1.63    		 GO:0003677 ... B0I1S0
    E5BBQ0    		 31451806
    4204 6sc2:B (3.9) BS02 ATP ?
    2.1.1.63    		 GO:0003677 ... B0I1S0
    E5BBQ0    		 31451806
    4205 6sr6:A (2.5) BS01 ATP ? GO:0005515 ... G0RZX9 32198371
    4206 6sr6:C (2.5) BS01 ATP ? GO:0005515 ... G0RZX9 32198371
    4207 6sv5:A (2.0) BS01 ATP 2.7.1.230 GO:0004413 ... A8FAR5 32637600 MOAD: Kd=50nM
    4208 6syt:C (3.45) BS01 ATP ? GO:0000184 ... Q9H0W8 31792449
    4209 6tax:A (3.2) BS01 ATP 2.3.2.-
    2.3.2.27
    3.6.4.-    		 GO:0004842 ... E9Q555 32573437
    4210 6tay:A (3.2) BS01 ATP 2.3.2.-
    2.3.2.27
    3.6.4.-    		 GO:0004842 ... E9Q555 32573437
    4211 6tdu:AA (4.32) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4212 6tdu:AB (4.32) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4213 6tdu:AB (4.32) BS04 ATP N/A GO:0005524 ... N/A 31738165
    4214 6tdu:AC (4.32) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4215 6tdu:AF (4.32) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4216 6tdu:BA (4.32) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4217 6tdu:BB (4.32) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4218 6tdu:BB (4.32) BS03 ATP N/A GO:0005524 ... N/A 31738165
    4219 6tdu:BC (4.32) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4220 6tdu:BF (4.32) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4221 6tdy:A (3.04) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4222 6tdy:B (3.04) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4223 6tdy:B (3.04) BS04 ATP N/A GO:0005524 ... N/A 31738165
    4224 6tdy:C (3.04) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4225 6tdy:F (3.04) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4226 6tdz:A (3.14) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4227 6tdz:B (3.14) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4228 6tdz:C (3.14) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4229 6tdz:C (3.14) BS03 ATP N/A GO:0005524 ... N/A 31738165
    4230 6tdz:D (3.14) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4231 6te0:A (3.92) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4232 6te0:B (3.92) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4233 6te0:C (3.92) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4234 6te0:E (3.92) BS01 ATP N/A GO:0005524 ... N/A 31738165
    4235 6tmh:A (3.1) BS01 ATP ? GO:0005524 ... S7UU80 33402698
    4236 6tmh:C (3.1) BS01 ATP ? GO:0005524 ... S7UU80 33402698
    4237 6tmh:E (3.1) BS01 ATP ? GO:0005524 ... S7UU80 33402698
    4238 6tmk:A1 (2.9) BS01 ATP ? GO:0005524 ... S7UU80 33402698
    4239 6tmk:A2 (2.9) BS01 ATP ? GO:0005524 ... S7UU80 33402698
    4240 6tmk:C1 (2.9) BS01 ATP ? GO:0005524 ... S7UU80 33402698
    4241 6tmk:C2 (2.9) BS01 ATP ? GO:0005524 ... S7UU80 33402698
    4242 6tmk:E1 (2.9) BS01 ATP ? GO:0005524 ... S7UU80 33402698
    4243 6tmk:E2 (2.9) BS01 ATP ? GO:0005524 ... S7UU80 33402698
    4244 6tmt:A (4.03) BS02 ATP ? GO:0005524 ... Q2Z0T5 32339190
    4245 6tmt:B (4.03) BS01 ATP ? GO:0005524 ... Q2Z0T5 32339190
    4246 6tmt:C (4.03) BS01 ATP ? GO:0005524 ... Q2Z0T5 32339190
    4247 6tmt:D (4.03) BS02 ATP ? GO:0005524 ... Q2Z0T5 32339190
    4248 6tmt:E (4.03) BS01 ATP ? GO:0005524 ... Q2Z0T5 32339190
    4249 6tmt:F (4.03) BS02 ATP ? GO:0005524 ... Q2Z0T5 32339190
    4250 6tmt:G (4.03) BS01 ATP ? GO:0005524 ... Q2Z0T5 32339190
    4251 6tmu:A (3.54) BS01 ATP ? GO:0005524 ... Q2Z0T5 32339190
    4252 6tmu:C (3.54) BS01 ATP ? GO:0005524 ... Q2Z0T5 32339190
    4253 6tmu:E (3.54) BS01 ATP ? GO:0005524 ... Q2Z0T5 32339190
    4254 6tmu:G (3.54) BS01 ATP ? GO:0005524 ... Q2Z0T5 32339190
    4255 6tnm:A (2.95) BS01 ATP 1.1.1.35
    4.2.1.17
    5.1.2.3
    5.3.3.8    		 GO:0003824 ... P21177 32171906
    4256 6tqe:A (4.3) BS01 ATP 7.6.2.- GO:0005524 ... P9WQI9 32296172
    4257 6tqe:A (4.3) BS03 ATP 7.6.2.- GO:0005524 ... P9WQI9 32296172
    4258 6tqe:B (4.3) BS01 ATP 7.6.2.- GO:0005524 ... P9WQI9 32296172
    4259 6tqe:B (4.3) BS02 ATP 7.6.2.- GO:0005524 ... P9WQI9 32296172
    4260 6tz2:A (3.5) BS04 ATP 2.7.7.48 GO:0001172 ... Q993A4 31695188
    4261 6u0m:2 (3.9) BS01 ATP 3.6.4.12 GO:0003677 ... P29469 N/A
    4262 6u0m:2 (3.9) BS02 ATP 3.6.4.12 GO:0003677 ... P29469 N/A
    4263 6u0m:3 (3.9) BS02 ATP 3.6.4.12 GO:0003677 ... P24279 N/A
    4264 6u0m:5 (3.9) BS02 ATP 3.6.4.12 GO:0003677 ... P29496 N/A
    4265 6u0m:5 (3.9) BS03 ATP 3.6.4.12 GO:0003677 ... P29496 N/A
    4266 6u0m:6 (3.9) BS02 ATP 3.6.4.12 GO:0003677 ... P53091 N/A
    4267 6u1d:A (1.9) BS05 ATP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    4268 6u1d:B (1.9) BS05 ATP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    4269 6u1e:A (2.1) BS05 ATP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    4270 6u1e:B (2.1) BS05 ATP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    4271 6u1f:A (2.3) BS05 ATP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    4272 6u1f:B (2.3) BS05 ATP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    4273 6u1g:A (2.4) BS05 ATP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    4274 6u1g:B (2.4) BS05 ATP 6.3.2.4 GO:0003824 ... Q5SHZ3 32335509
    4275 6u8n:A (3.29) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4276 6u8n:A (3.29) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4277 6u8n:B (3.29) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4278 6u8n:B (3.29) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4279 6u8n:C (3.29) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4280 6u8n:C (3.29) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4281 6u8n:D (3.29) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4282 6u8n:D (3.29) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4283 6u8n:E (3.29) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4284 6u8n:E (3.29) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4285 6u8n:F (3.29) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4286 6u8n:F (3.29) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4287 6u8n:G (3.29) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4288 6u8n:G (3.29) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4289 6u8n:H (3.29) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4290 6u8n:H (3.29) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4291 6u8r:A (3.91) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4292 6u8r:A (3.91) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4293 6u8r:B (3.91) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4294 6u8r:B (3.91) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4295 6u8r:C (3.91) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4296 6u8r:C (3.91) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4297 6u8r:D (3.91) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4298 6u8r:D (3.91) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4299 6u8r:E (3.91) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4300 6u8r:E (3.91) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4301 6u8r:F (3.91) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4302 6u8r:F (3.91) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4303 6u8r:G (3.91) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4304 6u8r:G (3.91) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4305 6u8r:H (3.91) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4306 6u8r:H (3.91) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4307 6u9d:C (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    4308 6u9d:C (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    4309 6u9d:C (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    4310 6u9d:D (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    4311 6u9d:D (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    4312 6u9d:D (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    4313 6u9d:G (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    4314 6u9d:G (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    4315 6u9d:G (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    4316 6u9d:H (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    4317 6u9d:H (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    4318 6u9d:H (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    4319 6u9d:K (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    4320 6u9d:K (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    4321 6u9d:K (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    4322 6u9d:L (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    4323 6u9d:L (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    4324 6u9d:L (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    4325 6u9d:O (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    4326 6u9d:O (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    4327 6u9d:O (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    4328 6u9d:P (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    4329 6u9d:P (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    4330 6u9d:P (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    4331 6u9d:S (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    4332 6u9d:S (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    4333 6u9d:T (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    4334 6u9d:T (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    4335 6u9d:T (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    4336 6u9d:W (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    4337 6u9d:W (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    4338 6u9d:W (3.194) BS03 ATP ? GO:0009082 ... P25605 32640464
    4339 6u9d:X (3.194) BS01 ATP ? GO:0009082 ... P25605 32640464
    4340 6u9d:X (3.194) BS02 ATP ? GO:0009082 ... P25605 32640464
    4341 6u9o:A (3.36) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4342 6u9o:B (3.36) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4343 6u9o:C (3.36) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4344 6u9o:D (3.36) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4345 6u9o:E (3.36) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4346 6u9o:F (3.36) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4347 6u9o:G (3.36) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4348 6u9o:H (3.36) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4349 6u9w:A (3.3) BS05 ATP ? GO:0000165 ... Q64663 31587896
    4350 6u9w:A (3.3) BS06 ATP ? GO:0000165 ... Q64663 31587896
    4351 6u9w:B (3.3) BS01 ATP ? GO:0000165 ... Q64663 31587896
    4352 6u9w:B (3.3) BS06 ATP ? GO:0000165 ... Q64663 31587896
    4353 6u9w:C (3.3) BS01 ATP ? GO:0000165 ... Q64663 31587896
    4354 6u9w:C (3.3) BS02 ATP ? GO:0000165 ... Q64663 31587896
    4355 6ua2:A (4.2) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4356 6ua2:A (4.2) BS07 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4357 6ua2:B (4.2) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4358 6ua2:C (4.2) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4359 6ua2:C (4.2) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4360 6ua2:C (4.2) BS06 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4361 6ua2:D (4.2) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4362 6ua2:D (4.2) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4363 6ua2:E (4.2) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4364 6ua2:E (4.2) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4365 6ua2:F (4.2) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4366 6ua2:G (4.2) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4367 6ua2:G (4.2) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4368 6ua2:G (4.2) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4369 6ua2:H (4.2) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4370 6ua2:H (4.2) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4371 6ua4:A (3.65) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4372 6ua4:B (3.65) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4373 6ua4:C (3.65) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4374 6ua4:C (3.65) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4375 6ua4:D (3.65) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4376 6ua4:E (3.65) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4377 6ua4:F (3.65) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4378 6ua4:G (3.65) BS02 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4379 6ua4:G (3.65) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4380 6ua4:G (3.65) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4381 6ua4:H (3.65) BS04 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4382 6uaj:A (3.84) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4383 6uaj:B (3.84) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4384 6uaj:C (3.84) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4385 6uaj:D (3.84) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4386 6uaj:E (3.84) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4387 6uaj:F (3.84) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4388 6uaj:G (3.84) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4389 6uaj:H (3.84) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4390 6uc2:A (4.48) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4391 6uc2:B (4.48) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4392 6uc2:C (4.48) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4393 6uc2:D (4.48) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4394 6uc2:E (4.48) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4395 6uc2:F (4.48) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4396 6uc2:G (4.48) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4397 6uc2:H (4.48) BS03 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4398 6udo:A (3.21) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4399 6udo:B (3.21) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    4400 6udo:C (3.21) BS05 ATP 1.1.1.205 GO:0000166 ... P12268 31999252
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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