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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    4001 6rdp:Z (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4002 6rdq:T (4.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4003 6rdq:U (4.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4004 6rdq:V (4.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4005 6rdq:Y (4.0) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4006 6rdq:Z (4.0) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4007 6rdr:T (4.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4008 6rdr:U (4.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4009 6rdr:V (4.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4010 6rdr:Y (4.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4011 6rdr:Z (4.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4012 6rds:T (3.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4013 6rds:U (3.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4014 6rds:V (3.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4015 6rds:Y (3.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4016 6rds:Z (3.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4017 6rdt:T (3.4) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4018 6rdt:U (3.4) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4019 6rdt:V (3.4) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4020 6rdu:T (3.5) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4021 6rdu:U (3.5) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4022 6rdu:V (3.5) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4023 6rdv:T (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4024 6rdv:U (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4025 6rdv:V (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4026 6rdw:T (3.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4027 6rdw:U (3.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4028 6rdw:V (3.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4029 6rdx:T (3.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4030 6rdx:U (3.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4031 6rdx:V (3.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4032 6rdy:T (3.6) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4033 6rdy:U (3.6) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4034 6rdy:V (3.6) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4035 6rdz:T (3.5) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4036 6rdz:U (3.5) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4037 6rdz:V (3.5) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4038 6rdz:Z (3.5) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4039 6re0:T (3.6) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4040 6re0:U (3.6) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4041 6re0:V (3.6) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4042 6re0:Z (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4043 6re1:T (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4044 6re1:U (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4045 6re1:V (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4046 6re1:Z (3.2) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4047 6re2:T (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4048 6re2:U (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4049 6re2:V (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4050 6re3:T (3.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4051 6re3:U (3.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4052 6re3:V (3.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4053 6re4:T (3.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4054 6re4:U (3.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4055 6re4:V (3.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4056 6re5:T (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4057 6re5:U (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4058 6re5:V (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4059 6re6:T (3.4) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4060 6re6:U (3.4) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4061 6re6:V (3.4) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4062 6re7:T (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4063 6re7:U (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4064 6re7:V (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4065 6re8:T (3.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4066 6re8:U (3.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4067 6re8:V (3.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4068 6re8:X (3.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4069 6re9:T (3.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4070 6re9:U (3.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4071 6re9:V (3.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4072 6re9:X (3.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4073 6rea:T (3.6) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4074 6rea:U (3.6) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4075 6rea:V (3.6) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4076 6rea:X (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4077 6reb:T (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4078 6reb:U (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4079 6reb:V (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4080 6rec:T (3.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4081 6rec:U (3.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4082 6rec:V (3.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4083 6red:T (3.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4084 6red:U (3.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4085 6red:V (3.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4086 6ree:T (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4087 6ree:U (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4088 6ree:V (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4089 6ree:Y (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4090 6ref:T (3.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4091 6ref:U (3.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4092 6ref:V (3.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4093 6ref:Y (3.3) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4094 6rep:T (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4095 6rep:U (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4096 6rep:V (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4097 6rer:T (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4098 6rer:U (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4099 6rer:V (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4100 6rer:Y (2.9) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4101 6res:T (4.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4102 6res:U (4.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4103 6res:V (4.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4104 6res:X (4.3) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4105 6ret:T (4.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4106 6ret:U (4.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4107 6ret:V (4.3) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4108 6ret:X (4.3) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4109 6reu:T (4.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4110 6reu:U (4.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4111 6reu:V (4.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4112 6reu:X (4.2) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    4113 6rfu:A (2.8) BS01 ATP 1.1.1.205 GO:0000166 ... P50098 32001697
    4114 6rfu:A (2.8) BS03 ATP 1.1.1.205 GO:0000166 ... P50098 32001697
    4115 6rfu:B (2.8) BS01 ATP 1.1.1.205 GO:0000166 ... P50098 32001697
    4116 6rfu:B (2.8) BS02 ATP 1.1.1.205 GO:0000166 ... P50098 32001697
    4117 6riq:C (3.1) BS01 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4118 6riq:C (3.1) BS02 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4119 6riq:D (3.1) BS01 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4120 6riq:D (3.1) BS02 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4121 6riq:G (3.1) BS01 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4122 6riq:J (3.1) BS01 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4123 6riq:J (3.1) BS02 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4124 6riq:K (3.1) BS01 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4125 6riq:K (3.1) BS02 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4126 6riq:M (3.1) BS01 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4127 6riq:M (3.1) BS02 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4128 6riq:N (3.1) BS01 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4129 6riq:N (3.1) BS02 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4130 6riq:Q (3.1) BS01 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4131 6riq:Q (3.1) BS02 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4132 6riq:R (3.1) BS01 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4133 6riq:R (3.1) BS02 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4134 6riq:U (3.1) BS01 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4135 6riq:U (3.1) BS02 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4136 6riq:V (3.1) BS01 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4137 6riq:V (3.1) BS02 ATP ? GO:0005524 ... Q9HYZ6 31166018
    4138 6ris:A (2.1) BS01 ATP ? GO:0005737 ... P84308 31811022
    4139 6ris:B (2.1) BS01 ATP ? GO:0005737 ... P84253 31811022
    4140 6rj4:A (1.9) BS01 ATP ? GO:0005737 ... P84308 31811022
    4141 6rj4:C (1.9) BS01 ATP ? GO:0005737 ... P84308 31811022
    4142 6rj4:E (1.9) BS01 ATP ? GO:0005737 ... P84308 31811022
    4143 6rka:A (2.5) BS01 ATP N/A GO:0004478 ... N/A 31520601
    4144 6rka:A (2.5) BS03 ATP N/A GO:0004478 ... N/A 31520601
    4145 6rka:B (2.5) BS01 ATP N/A GO:0004478 ... N/A 31520601
    4146 6rka:B (2.5) BS03 ATP N/A GO:0004478 ... N/A 31520601
    4147 6rkd:A (3.2) BS01 ATP ? GO:0005737 ... P84308 31811022
    4148 6rkd:B (3.2) BS02 ATP ? GO:0005737 ... P84253 31811022
    4149 6rkd:C (3.2) BS01 ATP ? GO:0005737 ... P84308 31811022
    4150 6rkd:D (3.2) BS03 ATP ? GO:0005737 ... P84253 31811022
    4151 6rkd:E (3.2) BS02 ATP ? GO:0005737 ... P84308 31811022
    4152 6rkd:F (3.2) BS04 ATP ? GO:0005737 ... P84253 31811022
    4153 6rkd:G (3.2) BS01 ATP ? GO:0005737 ... P84308 31811022
    4154 6rkd:H (3.2) BS02 ATP ? GO:0005737 ... P84253 31811022
    4155 6rkd:I (3.2) BS02 ATP ? GO:0005737 ... P84308 31811022
    4156 6rkd:J (3.2) BS03 ATP ? GO:0005737 ... P84253 31811022
    4157 6rkd:K (3.2) BS02 ATP ? GO:0005737 ... P84308 31811022
    4158 6rkd:L (3.2) BS04 ATP ? GO:0005737 ... P84253 31811022
    4159 6rke:A (1.7) BS02 ATP ? GO:0005737 ... P84308 31811022
    4160 6rke:C (1.7) BS02 ATP ? GO:0005737 ... P84308 31811022
    4161 6rke:E (1.7) BS03 ATP ? GO:0005737 ... P84308 31811022
    4162 6rke:G (1.7) BS02 ATP ? GO:0005737 ... P84308 31811022
    4163 6rke:I (1.7) BS02 ATP ? GO:0005737 ... P84308 31811022
    4164 6rke:K (1.7) BS02 ATP ? GO:0005737 ... P84308 31811022
    4165 6rla:A (3.9) BS02 ATP ?
    2.1.1.63    		 GO:0003677 ... B0I1S0
    E5BBQ0    		 31451806
    4166 6rla:B (3.9) BS02 ATP ?
    2.1.1.63    		 GO:0003677 ... B0I1S0
    E5BBQ0    		 31451806
    4167 6rm2:A (2.5) BS01 ATP 6.3.4.25 GO:0000166 ... G3FFN6 N/A
    4168 6rm2:B (2.5) BS01 ATP 6.3.4.25 GO:0000166 ... G3FFN6 N/A
    4169 6rmd:D (2.8) BS01 ATP 3.1.3.99 GO:0000287 ... A0A144A134 32591529
    4170 6rqc:A (4.4) BS03 ATP ? GO:0003677 ... P54784 31748745
    4171 6rqc:D (4.4) BS03 ATP ? GO:0000808 ... P54791 31748745
    4172 6rqc:D (4.4) BS04 ATP ? GO:0000808 ... P54791 31748745
    4173 6rqc:E (4.4) BS03 ATP ? GO:0000808 ... P50874 31748745
    4174 6rw4:X (2.97) BS02 ATP ? GO:0003723 ... P51398 32522994
    4175 6rw5:X (3.14) BS02 ATP ? GO:0003723 ... P51398 32522994
    4176 6s2j:A (2.67) BS01 ATP ? GO:0005515 ... O32080 31868587
    4177 6s2j:B (2.67) BS01 ATP ? GO:0005515 ... O32080 31868587
    4178 6s47:Bi (3.28) BS03 ATP ? GO:0005524 ... Q08972 31299085
    4179 6s47:Bi (3.28) BS04 ATP ? GO:0005524 ... Q08972 31299085
    4180 6s5c:A (3.0) BS01 ATP ? GO:0005515 ... O32080 31868587
    4181 6s5c:A (3.0) BS03 ATP ? GO:0005515 ... O32080 31868587
    4182 6s5c:B (3.0) BS02 ATP ? GO:0005515 ... O32080 31868587
    4183 6s5d:A (3.393) BS01 ATP ? GO:0005515 ... O32080 31868587
    4184 6s5d:B (3.393) BS01 ATP ? GO:0005515 ... O32080 31868587
    4185 6s5e:A (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    4186 6s5e:B (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    4187 6s5e:C (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    4188 6s5e:D (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    4189 6s5e:E (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    4190 6s5e:F (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    4191 6s5e:G (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    4192 6s5e:H (3.893) BS01 ATP ? GO:0005515 ... O32080 31868587
    4193 6s5n:A (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    4194 6s5n:B (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    4195 6s5n:C (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    4196 6s5n:D (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    4197 6s5n:E (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    4198 6s5n:F (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    4199 6s5n:G (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    4200 6s5n:H (4.09) BS01 ATP ? GO:0005515 ... O32080 31868587
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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