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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3801 6p8j:B (1.47) BS01 ATP 2.7.7.-
    2.7.7.85    		 GO:0005524 ... P0DTF7 31932165
    3802 6p8j:C (1.47) BS01 ATP 2.7.7.-
    2.7.7.85    		 GO:0005524 ... P0DTF7 31932165
    3803 6p8j:D (1.47) BS01 ATP 2.7.7.-
    2.7.7.85    		 GO:0005524 ... P0DTF7 31932165
    3804 6p8v:A (2.64) BS01 ATP ? GO:0005524 ... D7Y2H4 31932165
    3805 6p8v:B (2.64) BS01 ATP ? GO:0005524 ... D7Y2H4 31932165
    3806 6p8v:B (2.64) BS02 ATP ? GO:0005524 ... D7Y2H4 31932165
    3807 6p8v:C (2.64) BS01 ATP ? GO:0005524 ... D7Y2H4 31932165
    3808 6p8v:C (2.64) BS02 ATP ? GO:0005524 ... D7Y2H4 31932165
    3809 6p8v:D (2.64) BS01 ATP ? GO:0005524 ... D7Y2H4 31932165
    3810 6p8v:D (2.64) BS02 ATP ? GO:0005524 ... D7Y2H4 31932165
    3811 6p8v:G (2.64) BS01 ATP 2.7.7.-
    2.7.7.85    		 GO:0001730 ... D7Y2H2 31932165
    3812 6pan:A (3.4) BS01 ATP 7.-.-.- GO:0005524 ... Q2G506 32703810
    3813 6pan:A (3.4) BS02 ATP 7.-.-.- GO:0005524 ... Q2G506 32703810
    3814 6pan:B (3.4) BS01 ATP 7.-.-.- GO:0005524 ... Q2G506 32703810
    3815 6pan:B (3.4) BS02 ATP 7.-.-.- GO:0005524 ... Q2G506 32703810
    3816 6pao:A (3.65) BS01 ATP 7.-.-.- GO:0005524 ... Q2G506 32703810
    3817 6pao:A (3.65) BS02 ATP 7.-.-.- GO:0005524 ... Q2G506 32703810
    3818 6pao:B (3.65) BS01 ATP 7.-.-.- GO:0005524 ... Q2G506 32703810
    3819 6pao:B (3.65) BS02 ATP 7.-.-.- GO:0005524 ... Q2G506 32703810
    3820 6paq:A (3.301) BS01 ATP 7.-.-.- GO:0005524 ... Q2G506 32703810
    3821 6paq:A (3.301) BS02 ATP 7.-.-.- GO:0005524 ... Q2G506 32703810
    3822 6paq:B (3.301) BS01 ATP 7.-.-.- GO:0005524 ... Q2G506 32703810
    3823 6paq:B (3.301) BS02 ATP 7.-.-.- GO:0005524 ... Q2G506 32703810
    3824 6pdt:A (3.8) BS02 ATP 2.7.1.2 GO:0001678 ... P17709 32108112
    3825 6pdt:B (3.8) BS02 ATP 2.7.1.2 GO:0001678 ... P17709 32108112
    3826 6pdt:C (3.8) BS02 ATP 2.7.1.2 GO:0001678 ... P17709 32108112
    3827 6pdt:D (3.8) BS02 ATP 2.7.1.2 GO:0001678 ... P17709 32108112
    3828 6pe0:A (3.5) BS02 ATP ? GO:0005524 ... G0S654 31999255
    3829 6pe0:B (3.5) BS02 ATP ? GO:0005524 ... G0S654 31999255
    3830 6pe0:B (3.5) BS03 ATP ? GO:0005524 ... G0S654 31999255
    3831 6pe0:C (3.5) BS02 ATP ? GO:0005524 ... G0S654 31999255
    3832 6pe0:D (3.5) BS02 ATP ? GO:0005524 ... G0S654 31999255
    3833 6pe0:D (3.5) BS03 ATP ? GO:0005524 ... G0S654 31999255
    3834 6pe0:E (3.5) BS02 ATP ? GO:0005524 ... G0S654 31999255
    3835 6pe0:E (3.5) BS03 ATP ? GO:0005524 ... G0S654 31999255
    3836 6pe0:F (3.5) BS01 ATP ? GO:0005524 ... G0S654 31999255
    3837 6pe3:A (2.3) BS01 ATP ? N/A Q58494 31139720
    3838 6peu:A (1.95) BS03 ATP ? N/A Q58494 31139720
    3839 6peu:B (1.95) BS03 ATP ? N/A Q58494 31139720
    3840 6peu:C (1.95) BS03 ATP ? N/A Q58494 31139720
    3841 6peu:D (1.95) BS03 ATP ? N/A Q58494 31139720
    3842 6pk4:A (3.5) BS02 ATP 6.3.4.2 GO:0003883 ... Q9NRF8 31873303
    3843 6pk4:B (3.5) BS02 ATP 6.3.4.2 GO:0003883 ... Q9NRF8 31873303
    3844 6pk4:C (3.5) BS02 ATP 6.3.4.2 GO:0003883 ... Q9NRF8 31873303
    3845 6pk4:D (3.5) BS02 ATP 6.3.4.2 GO:0003883 ... Q9NRF8 31873303
    3846 6pqv:A (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3847 6pqv:B (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3848 6pqv:C (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3849 6pqv:E (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    3850 6ptn:2 (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    3851 6ptn:2 (5.8) BS02 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    3852 6ptn:3 (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P24279 31589141
    3853 6ptn:5 (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    3854 6ptn:5 (5.8) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    3855 6ptn:6 (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P53091 31589141
    3856 6ptn:i (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    3857 6ptn:i (5.8) BS02 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    3858 6ptn:j (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P24279 31589141
    3859 6ptn:l (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    3860 6ptn:l (5.8) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    3861 6ptn:m (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P53091 31589141
    3862 6pto:2 (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    3863 6pto:2 (7.0) BS02 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    3864 6pto:3 (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P24279 31589141
    3865 6pto:5 (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    3866 6pto:5 (7.0) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    3867 6pto:6 (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P53091 31589141
    3868 6pto:h (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    3869 6pto:h (7.0) BS02 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    3870 6pto:i (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P24279 31589141
    3871 6pto:k (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    3872 6pto:k (7.0) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    3873 6pto:l (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P53091 31589141
    3874 6pz9:C (3.65) BS03 ATP ? GO:0005267 ... Q09427 31343405
    3875 6pza:C (3.74) BS03 ATP ? GO:0005267 ... Q09427 31343405
    3876 6pzi:G (4.5) BS01 ATP ? GO:0005267 ... Q09427 31343405
    3877 6q45:A (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... Q8RGE0 31238823
    3878 6q45:B (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... Q8RGE0 31238823
    3879 6q45:C (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... Q8RGE0 31238823
    3880 6q45:I (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... Q8RGE0 31238823
    3881 6q45:J (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... Q8RGE0 31238823
    3882 6q45:K (3.6) BS01 ATP 7.1.2.2 GO:0005524 ... Q8RGE0 31238823
    3883 6qdv:7 (3.3) BS01 ATP 3.6.4.13 GO:0000184 ... P38919 30705154
    3884 6qri:A (2.4) BS02 ATP 3.6.4.- GO:0000287 ... P68135 31260301
    3885 6qri:B (2.4) BS01 ATP 3.6.4.- GO:0000287 ... P68135 31260301
    3886 6qv0:A (3.12) BS01 ATP ? GO:0005515 ... Q9WYC3 31113958
    3887 6qv0:A (3.12) BS03 ATP ? GO:0005515 ... Q9WYC3 31113958
    3888 6qv0:B (3.12) BS01 ATP ? GO:0005515 ... Q9WYC4 31113958
    3889 6qv0:B (3.12) BS02 ATP ? GO:0005515 ... Q9WYC4 31113958
    3890 6qv0:C (3.12) BS01 ATP ? GO:0005515 ... Q9WYC3 31113958
    3891 6qv0:C (3.12) BS03 ATP ? GO:0005515 ... Q9WYC3 31113958
    3892 6qv0:D (3.12) BS01 ATP ? GO:0005515 ... Q9WYC4 31113958
    3893 6qv0:D (3.12) BS02 ATP ? GO:0005515 ... Q9WYC4 31113958
    3894 6r4s:A (2.75) BS04 ATP 2.7.7.102 GO:0000287 ... P49642 31479243 PDBbind: -logKd/Ki=6.39, Kd=0.41uM
    3895 6r4s:E (2.75) BS04 ATP 2.7.7.102 GO:0000287 ... P49642 31479243
    3896 6r72:A (3.95) BS01 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    3897 6r72:A (3.95) BS03 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    3898 6r72:B (3.95) BS01 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    3899 6r72:B (3.95) BS02 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    3900 6r72:C (3.95) BS01 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    3901 6r72:C (3.95) BS03 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    3902 6r72:D (3.95) BS01 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    3903 6r72:D (3.95) BS02 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    3904 6r81:A (3.9) BS01 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    3905 6r81:A (3.9) BS02 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    3906 6r81:B (3.9) BS01 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    3907 6r81:B (3.9) BS02 ATP 7.6.2.- GO:0005524 ... O06967 35080979
    3908 6raf:A (3.8) BS01 ATP ? GO:0005515 ... Q72J05 31316210
    3909 6rag:B (4.2) BS02 ATP ? GO:0005515 ... Q72J04 31316210
    3910 6rah:A (2.8) BS01 ATP ? GO:0005515 ... Q72J05 31316210
    3911 6rah:A (2.8) BS03 ATP ? GO:0005515 ... Q72J05 31316210
    3912 6rah:B (2.8) BS01 ATP ? GO:0005515 ... Q72J04 31316210
    3913 6rah:B (2.8) BS02 ATP ? GO:0005515 ... Q72J04 31316210
    3914 6rai:A (2.9) BS01 ATP ? GO:0005515 ... Q72J05 31316210
    3915 6rai:A (2.9) BS03 ATP ? GO:0005515 ... Q72J05 31316210
    3916 6rai:B (2.9) BS01 ATP ? GO:0005515 ... Q72J04 31316210
    3917 6rai:B (2.9) BS02 ATP ? GO:0005515 ... Q72J04 31316210
    3918 6raj:B (3.5) BS02 ATP ? GO:0005515 ... Q72J04 31316210
    3919 6rak:A (3.3) BS03 ATP ? GO:0005515 ... Q72J05 31316210
    3920 6rak:B (3.3) BS02 ATP ? GO:0005515 ... Q72J04 31316210
    3921 6ral:A (3.5) BS03 ATP ? GO:0005515 ... Q72J05 31316210
    3922 6ral:B (3.5) BS02 ATP ? GO:0005515 ... Q72J04 31316210
    3923 6ram:B (3.8) BS01 ATP ? GO:0005515 ... Q72J04 31316210
    3924 6raw:2 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... P49735 31484077
    3925 6raw:2 (3.7) BS03 ATP 3.6.4.12 GO:0000727 ... P49735 31484077
    3926 6raw:3 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... Q9XYU1 31484077
    3927 6raw:5 (3.7) BS02 ATP 3.6.4.12 GO:0000712 ... Q9VGW6 31484077
    3928 6raw:5 (3.7) BS03 ATP 3.6.4.12 GO:0000712 ... Q9VGW6 31484077
    3929 6raw:6 (3.7) BS02 ATP 3.6.4.12 GO:0000727 ... Q9V461 31484077
    3930 6rax:2 (3.99) BS02 ATP 3.6.4.12 GO:0000727 ... P49735 31484077
    3931 6rax:2 (3.99) BS03 ATP 3.6.4.12 GO:0000727 ... P49735 31484077
    3932 6rax:3 (3.99) BS02 ATP 3.6.4.12 GO:0000727 ... Q9XYU1 31484077
    3933 6rax:5 (3.99) BS02 ATP 3.6.4.12 GO:0000712 ... Q9VGW6 31484077
    3934 6rax:5 (3.99) BS03 ATP 3.6.4.12 GO:0000712 ... Q9VGW6 31484077
    3935 6rax:6 (3.99) BS01 ATP 3.6.4.12 GO:0000727 ... Q9V461 31484077
    3936 6ray:2 (4.28) BS02 ATP 3.6.4.12 GO:0000727 ... P49735 31484077
    3937 6ray:3 (4.28) BS02 ATP 3.6.4.12 GO:0000727 ... Q9XYU1 31484077
    3938 6ray:4 (4.28) BS02 ATP 3.6.4.12 GO:0000727 ... Q26454 31484077
    3939 6ray:4 (4.28) BS03 ATP 3.6.4.12 GO:0000727 ... Q26454 31484077
    3940 6ray:6 (4.28) BS02 ATP 3.6.4.12 GO:0000727 ... Q9V461 31484077
    3941 6ray:6 (4.28) BS03 ATP 3.6.4.12 GO:0000727 ... Q9V461 31484077
    3942 6ray:7 (4.28) BS02 ATP 3.6.4.12 GO:0000727 ... Q9XYU0 31484077
    3943 6raz:3 (4.46) BS02 ATP 3.6.4.12 GO:0000727 ... Q9XYU1 31484077
    3944 6raz:3 (4.46) BS03 ATP 3.6.4.12 GO:0000727 ... Q9XYU1 31484077
    3945 6raz:4 (4.46) BS02 ATP 3.6.4.12 GO:0000727 ... Q26454 31484077
    3946 6raz:4 (4.46) BS03 ATP 3.6.4.12 GO:0000727 ... Q26454 31484077
    3947 6raz:6 (4.46) BS02 ATP 3.6.4.12 GO:0000727 ... Q9V461 31484077
    3948 6raz:7 (4.46) BS02 ATP 3.6.4.12 GO:0000727 ... Q9XYU0 31484077
    3949 6raz:7 (4.46) BS03 ATP 3.6.4.12 GO:0000727 ... Q9XYU0 31484077
    3950 6rd4:T (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3951 6rd4:U (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3952 6rd4:V (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3953 6rd9:T (3.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3954 6rd9:U (3.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3955 6rd9:V (3.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3956 6rdb:T (2.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3957 6rdb:U (2.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3958 6rdb:V (2.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3959 6rdb:Z (2.8) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    3960 6rdc:T (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3961 6rdc:U (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3962 6rdc:V (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3963 6rde:T (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3964 6rde:U (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3965 6rde:V (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3966 6rdg:T (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3967 6rdg:U (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3968 6rdg:V (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3969 6rdh:T (3.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3970 6rdh:U (3.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3971 6rdh:V (3.0) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3972 6rdi:T (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3973 6rdi:U (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3974 6rdi:V (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3975 6rdj:T (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3976 6rdj:U (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3977 6rdj:V (2.9) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3978 6rdk:T (3.7) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3979 6rdk:U (3.7) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3980 6rdk:V (3.7) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3981 6rdk:X (3.7) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    3982 6rdl:T (3.7) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3983 6rdl:U (3.7) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3984 6rdl:V (3.7) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3985 6rdl:X (3.7) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    3986 6rdm:T (3.44) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3987 6rdm:U (3.44) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3988 6rdm:V (3.44) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3989 6rdm:X (3.44) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    3990 6rdn:T (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3991 6rdn:U (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3992 6rdn:V (3.2) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3993 6rdn:Z (3.2) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    3994 6rdo:T (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3995 6rdo:U (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3996 6rdo:V (3.1) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3997 6rdo:Z (3.1) BS01 ATP 7.1.2.2 GO:0005524 ... A0ZW41 31221832
    3998 6rdp:T (2.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    3999 6rdp:U (2.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    4000 6rdp:V (2.8) BS01 ATP ? GO:0005524 ... A0ZW40 31221832
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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