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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3601 6msk:D (3.2) BS01 ATP ? GO:0000502 ... P43686 30479383
    3602 6msk:F (3.2) BS01 ATP ? GO:0000502 ... P17980 30479383
    3603 6msm:A (3.2) BS04 ATP 5.6.1.6 GO:0005254 ... P13569 30459277
    3604 6msm:A (3.2) BS05 ATP 5.6.1.6 GO:0005254 ... P13569 30459277
    3605 6mt9:A (2.5) BS03 ATP 1.17.4.1 GO:0004748 ... P50620 31201319
    3606 6mve:A (2.55) BS03 ATP 1.17.4.1 GO:0004748 ... P50620 31201319
    3607 6mw7:A (2.194) BS01 ATP 3.6.1.- GO:0006302 ... A6NHR9 31312724
    3608 6mw7:B (2.194) BS01 ATP 3.6.1.- GO:0006302 ... A6NHR9 31312724
    3609 6mw7:C (2.194) BS01 ATP 3.6.1.- GO:0006302 ... A6NHR9 31312724
    3610 6mw7:D (2.194) BS01 ATP 3.6.1.- GO:0006302 ... A6NHR9 31312724
    3611 6n0t:A (2.511) BS02 ATP 6.5.1.3 N/A G0S6G2 30590734
    3612 6n2y:A (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    3613 6n2y:B (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    3614 6n2y:C (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    3615 6n2z:A (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    3616 6n2z:B (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    3617 6n2z:C (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    3618 6n30:A (3.2) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    3619 6n30:B (3.2) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    3620 6n30:C (3.2) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    3621 6n8t:A (7.7) BS01 ATP ? GO:0005515 ... P31539 30605683
    3622 6n8t:A (7.7) BS02 ATP ? GO:0005515 ... P31539 30605683
    3623 6n8t:B (7.7) BS01 ATP ? GO:0005515 ... P31539 30605683
    3624 6n8t:B (7.7) BS02 ATP ? GO:0005515 ... P31539 30605683
    3625 6n8t:C (7.7) BS01 ATP ? GO:0005515 ... P31539 30605683
    3626 6n8t:C (7.7) BS02 ATP ? GO:0005515 ... P31539 30605683
    3627 6n8t:D (7.7) BS01 ATP ? GO:0005515 ... P31539 30605683
    3628 6n8t:D (7.7) BS02 ATP ? GO:0005515 ... P31539 30605683
    3629 6n8t:E (7.7) BS01 ATP ? GO:0005515 ... P31539 30605683
    3630 6n8t:E (7.7) BS02 ATP ? GO:0005515 ... P31539 30605683
    3631 6n8t:F (7.7) BS01 ATP ? GO:0005515 ... P31539 30605683
    3632 6n8t:F (7.7) BS02 ATP ? GO:0005515 ... P31539 30605683
    3633 6n8v:A (9.3) BS01 ATP ? GO:0005515 ... P31539 30605683
    3634 6n8v:B (9.3) BS01 ATP ? GO:0005515 ... P31539 30605683
    3635 6n8v:B (9.3) BS02 ATP ? GO:0005515 ... P31539 30605683
    3636 6n8v:C (9.3) BS01 ATP ? GO:0005515 ... P31539 30605683
    3637 6n8v:C (9.3) BS02 ATP ? GO:0005515 ... P31539 30605683
    3638 6n8v:D (9.3) BS01 ATP ? GO:0005515 ... P31539 30605683
    3639 6n8v:D (9.3) BS02 ATP ? GO:0005515 ... P31539 30605683
    3640 6n8v:E (9.3) BS01 ATP ? GO:0005515 ... P31539 30605683
    3641 6n8v:E (9.3) BS02 ATP ? GO:0005515 ... P31539 30605683
    3642 6n8v:F (9.3) BS01 ATP ? GO:0005515 ... P31539 30605683
    3643 6n8v:F (9.3) BS02 ATP ? GO:0005515 ... P31539 30605683
    3644 6n8z:A (9.3) BS01 ATP ? GO:0005515 ... P31539 30605683
    3645 6n8z:A (9.3) BS02 ATP ? GO:0005515 ... P31539 30605683
    3646 6n8z:B (9.3) BS01 ATP ? GO:0005515 ... P31539 30605683
    3647 6n8z:B (9.3) BS02 ATP ? GO:0005515 ... P31539 30605683
    3648 6n8z:C (9.3) BS01 ATP ? GO:0005515 ... P31539 30605683
    3649 6n8z:C (9.3) BS02 ATP ? GO:0005515 ... P31539 30605683
    3650 6n8z:D (9.3) BS01 ATP ? GO:0005515 ... P31539 30605683
    3651 6n8z:D (9.3) BS02 ATP ? GO:0005515 ... P31539 30605683
    3652 6n8z:D (9.3) BS03 ATP ? GO:0005515 ... P31539 30605683
    3653 6n8z:E (9.3) BS01 ATP ? GO:0005515 ... P31539 30605683
    3654 6n8z:E (9.3) BS02 ATP ? GO:0005515 ... P31539 30605683
    3655 6n8z:E (9.3) BS03 ATP ? GO:0005515 ... P31539 30605683
    3656 6n8z:F (9.3) BS01 ATP ? GO:0005515 ... P31539 30605683
    3657 6n8z:F (9.3) BS02 ATP ? GO:0005515 ... P31539 30605683
    3658 6n9a:D (2.5) BS04 ATP 2.3.1.234 GO:0002949 ... Q9WXZ2 31114923
    3659 6n9a:E (2.5) BS01 ATP ? GO:0002949 ... Q9X1W7 31114923
    3660 6nas:A (2.9) BS01 ATP 3.6.4.- GO:0000287 ... P68135 32284999
    3661 6nbe:A (2.0) BS01 ATP 3.6.4.- GO:0000287 ... P68135 32284999
    3662 6nbj:B (2.94) BS02 ATP 2.3.1.234 GO:0000049 ... P43122 N/A
    3663 6nbw:A (2.5) BS01 ATP 3.6.4.- GO:0000079 ... P60709 32284999
    3664 6nhx:A (1.4) BS01 ATP N/A GO:0003910 ... N/A 30718283
    3665 6nhz:A (1.8) BS01 ATP N/A GO:0003910 ... N/A 30718283
    3666 6no7:E (3.55) BS01 ATP 2.7.11.11 GO:0000287 ... P17612 31363049
    3667 6no7:G (3.55) BS02 ATP 2.7.11.11 GO:0000287 ... P17612 31363049
    3668 6noo:B (2.5) BS01 ATP 3.6.4.- GO:0003677 ... B7KMS4 31106331
    3669 6nop:A (1.7) BS01 ATP 3.6.4.- GO:0003677 ... B7KMS4 31106331
    3670 6nop:A (1.7) BS02 ATP 3.6.4.- GO:0003677 ... B7KMS4 31106331
    3671 6nop:B (1.7) BS01 ATP 3.6.4.- GO:0003677 ... B7KMS4 31106331
    3672 6nop:B (1.7) BS02 ATP 3.6.4.- GO:0003677 ... B7KMS4 31106331
    3673 6ntb:A (1.9) BS01 ATP ? GO:0005524 ... B5II98 N/A PDBbind: -logKd/Ki=5.15, Kd=7.07uM
    3674 6ntb:A (1.9) BS02 ATP ? GO:0005524 ... B5II98 N/A PDBbind: -logKd/Ki=5.15, Kd=7.07uM
    3675 6ntb:B (1.9) BS01 ATP ? GO:0005524 ... B5II98 N/A
    3676 6ntb:B (1.9) BS02 ATP ? GO:0005524 ... B5II98 N/A
    3677 6ntb:C (1.9) BS01 ATP ? GO:0005524 ... B5II98 N/A PDBbind: -logKd/Ki=5.15, Kd=7.07uM
    3678 6ntb:C (1.9) BS02 ATP ? GO:0005524 ... B5II98 N/A PDBbind: -logKd/Ki=5.15, Kd=7.07uM
    3679 6nud:J (3.5) BS02 ATP 2.7.7.-
    3.1.-.-    		 GO:0003723 ... A0A0A7HFE1 30814678
    3680 6nue:I (3.3) BS02 ATP ? GO:0003723 ... A0A0A7HGA1 30814678
    3681 6nue:J (3.3) BS01 ATP 2.7.7.-
    3.1.-.-    		 GO:0003723 ... A0A0A7HFE1 30814678
    3682 6nya:A (2.065) BS01 ATP 6.2.1.45 GO:0004839 ... P22515 31341161
    3683 6nya:D (2.065) BS01 ATP 6.2.1.45 GO:0004839 ... P22515 31341161
    3684 6o1v:A (3.2) BS05 ATP 5.6.1.6 GO:0005254 ... P13569 31221859
    3685 6o1v:A (3.2) BS06 ATP 5.6.1.6 GO:0005254 ... P13569 31221859
    3686 6o1y:A (2.7) BS01 ATP ? GO:0000166 ... Q1PLI0 N/A
    3687 6o2p:A (3.3) BS04 ATP 5.6.1.6 GO:0005254 ... P13569 31221859
    3688 6o2p:A (3.3) BS05 ATP 5.6.1.6 GO:0005254 ... P13569 31221859
    3689 6o7d:A (2.81) BS01 ATP 2.7.7.-
    3.1.-.-    		 GO:0004519 ... B6YWB8 31326272
    3690 6oa9:A (3.9) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    3691 6oa9:B (3.9) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    3692 6oa9:B (3.9) BS02 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    3693 6oa9:C (3.9) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    3694 6oa9:C (3.9) BS02 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    3695 6oa9:D (3.9) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    3696 6oa9:D (3.9) BS02 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    3697 6oa9:D (3.9) BS03 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    3698 6oa9:E (3.9) BS02 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    3699 6oa9:F (3.9) BS01 ATP 3.6.4.6 GO:0000837 ... P25694 31249135
    3700 6oif:A (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3701 6oif:A (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3702 6oif:B (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3703 6oif:B (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3704 6oif:C (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3705 6oif:C (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3706 6oif:D (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3707 6oif:D (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3708 6oif:E (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3709 6oif:E (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3710 6oif:F (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3711 6oif:F (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3712 6oif:G (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3713 6oif:G (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3714 6oif:H (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3715 6oif:H (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3716 6oif:I (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3717 6oif:I (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3718 6oif:J (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3719 6oif:J (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3720 6oif:K (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3721 6oif:K (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3722 6oif:L (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3723 6oif:L (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3724 6oif:M (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3725 6oif:M (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3726 6oif:N (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3727 6oif:N (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3728 6oif:O (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3729 6oif:O (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3730 6oif:P (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3731 6oif:P (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3732 6oif:Q (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3733 6oif:Q (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3734 6oif:R (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3735 6oif:R (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3736 6oif:S (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3737 6oif:S (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3738 6oif:T (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3739 6oif:T (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3740 6oif:U (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3741 6oif:U (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3742 6oif:V (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3743 6oif:V (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3744 6oif:W (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3745 6oif:W (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3746 6oif:X (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3747 6oif:X (4.4) BS02 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3748 6oif:Y (4.4) BS01 ATP 3.6.4.- GO:0000338 ... O14656 31332180
    3749 6ojx:A (1.892) BS01 ATP ? GO:0005524 ... Q39VU6 31729381
    3750 6ojx:B (1.892) BS01 ATP ? GO:0005524 ... Q39VU6 31729381
    3751 6ojx:C (1.892) BS01 ATP ? GO:0005524 ... Q39VU6 31729381
    3752 6olm:A (4.4) BS01 ATP ? GO:0005524 ... Q39VU6 31729381
    3753 6olm:B (4.4) BS01 ATP ? GO:0005524 ... Q39VU6 31729381
    3754 6olm:C (4.4) BS01 ATP ? GO:0005524 ... Q39VU6 31729381
    3755 6olm:D (4.4) BS01 ATP ? GO:0005524 ... Q39VU6 31729381
    3756 6olm:E (4.4) BS01 ATP ? GO:0005524 ... Q39VU6 31729381
    3757 6olm:F (4.4) BS01 ATP ? GO:0005524 ... Q39VU6 31729381
    3758 6on2:A (3.0) BS01 ATP 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    3759 6on2:B (3.0) BS02 ATP 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    3760 6on2:C (3.0) BS02 ATP 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    3761 6on2:C (3.0) BS03 ATP 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    3762 6on2:D (3.0) BS01 ATP 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    3763 6on2:D (3.0) BS02 ATP 3.4.21.53 GO:0004176 ... A0A5P8YJ65 32490208
    3764 6oqr:A (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3765 6oqr:B (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3766 6oqr:C (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3767 6oqr:E (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    3768 6oqs:A (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3769 6oqs:B (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3770 6oqs:C (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3771 6oqs:E (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    3772 6oqt:A (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3773 6oqt:B (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3774 6oqt:C (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3775 6oqt:E (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    3776 6oqu:A (3.2) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3777 6oqu:B (3.2) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3778 6oqu:C (3.2) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3779 6oqu:E (3.2) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    3780 6oqv:A (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3781 6oqv:B (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3782 6oqv:C (3.3) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3783 6oqw:A (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3784 6oqw:B (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3785 6oqw:C (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 32457314
    3786 6oqw:E (3.1) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB4 32457314
    3787 6p07:A (3.2) BS02 ATP 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    3788 6p07:B (3.2) BS02 ATP 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    3789 6p07:B (3.2) BS03 ATP 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    3790 6p07:C (3.2) BS02 ATP 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    3791 6p07:D (3.2) BS02 ATP 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    3792 6p07:D (3.2) BS03 ATP 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    3793 6p07:E (3.2) BS02 ATP 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    3794 6p07:E (3.2) BS03 ATP 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    3795 6p07:F (3.2) BS02 ATP 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    3796 6p07:F (3.2) BS03 ATP 5.6.1.1 GO:0005524 ... A0A0B4LHJ5 31285604
    3797 6p1o:A (1.65) BS06 ATP 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    3798 6p1s:A (1.75) BS04 ATP 2.7.7.7 GO:0003677 ... Q9NP87 31435651
    3799 6p80:A (1.5) BS01 ATP 2.7.7.-
    2.7.7.85    		 GO:0001730 ... D7Y2H2 31932165
    3800 6p8j:A (1.47) BS01 ATP 2.7.7.-
    2.7.7.85    		 GO:0005524 ... P0DTF7 31932165
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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