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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 9664 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2601 5m7n:B (2.9) BS01 ATP N/A GO:0000160 ... N/A 28088479
    2602 5m7n:B (2.9) BS03 ATP N/A GO:0000160 ... N/A 28088479
    2603 5mb9:A (3.2) BS01 ATP ? GO:0005515 ... G0RZX9 28067917
    2604 5mb9:B (3.2) BS02 ATP ? GO:0005515 ... G0RZX9 28067917
    2605 5mbk:A (2.4) BS01 ATP N/A GO:0009190 ... N/A 28336405
    2606 5mcp:A (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2607 5mcp:A (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2608 5mcp:A (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2609 5mcp:B (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2610 5mcp:B (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2611 5mcp:B (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2612 5mcp:C (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2613 5mcp:C (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2614 5mcp:C (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2615 5mcp:D (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2616 5mcp:D (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2617 5mcp:D (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2618 5mcp:E (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2619 5mcp:E (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2620 5mcp:E (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2621 5mcp:F (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2622 5mcp:F (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2623 5mcp:F (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2624 5mcp:G (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2625 5mcp:G (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2626 5mcp:G (2.4) BS03 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2627 5mcp:H (2.4) BS01 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2628 5mcp:H (2.4) BS02 ATP 1.1.1.205 GO:0000166 ... Q756Z6 28572600
    2629 5mp9:H (4.1) BS01 ATP ? GO:0000502 ... P33299 28115689
    2630 5mp9:I (4.1) BS01 ATP ? GO:0000502 ... P40327 28115689
    2631 5mp9:K (4.1) BS01 ATP ? GO:0000502 ... P33298 28115689
    2632 5mp9:L (4.1) BS01 ATP ? GO:0000502 ... P53549 28115689
    2633 5mp9:M (4.1) BS01 ATP ? GO:0000502 ... P33297 28115689
    2634 5mp9:M (4.1) BS02 ATP ? GO:0000502 ... P33297 28115689
    2635 5mpa:H (4.5) BS01 ATP ? GO:0000502 ... P33299 28115689
    2636 5mpa:I (4.5) BS01 ATP ? GO:0000502 ... P40327 28115689
    2637 5mpa:K (4.5) BS01 ATP ? GO:0000502 ... P33298 28115689
    2638 5mpa:L (4.5) BS01 ATP ? GO:0000502 ... P53549 28115689
    2639 5mpa:M (4.5) BS01 ATP ? GO:0000502 ... P33297 28115689
    2640 5mpa:M (4.5) BS02 ATP ? GO:0000502 ... P33297 28115689
    2641 5mpc:H (7.7) BS01 ATP ? GO:0000502 ... P33299 28115689
    2642 5mpc:H (7.7) BS02 ATP ? GO:0000502 ... P33299 28115689
    2643 5mpc:I (7.7) BS01 ATP ? GO:0000502 ... P40327 28115689
    2644 5mpc:I (7.7) BS02 ATP ? GO:0000502 ... P40327 28115689
    2645 5mpc:J (7.7) BS01 ATP ? GO:0000502 ... Q01939 28115689
    2646 5mpc:J (7.7) BS02 ATP ? GO:0000502 ... Q01939 28115689
    2647 5mpc:M (7.7) BS01 ATP ? GO:0000502 ... P33297 28115689
    2648 5mqw:A (2.4) BS01 ATP ? GO:0005524 ... Q30C70 28628129
    2649 5mrd:A (1.41) BS02 ATP 2.7.11.1 GO:0004672 ... O15530 28045490
    2650 5mvv:A (1.4) BS01 ATP 3.6.4.- GO:0005200 ... Q8I4X0 28695858
    2651 5mw8:A (2.4) BS01 ATP 2.7.1.158 GO:0005524 ... Q6P1C1 28450399
    2652 5mwl:A (3.2) BS01 ATP 2.7.1.158 GO:0005524 ... Q6P1C1 28450399
    2653 5n9x:A (2.396) BS02 ATP ? GO:0003824 ... H6SG27 28704585
    2654 5nbl:A (2.8) BS01 ATP ? GO:0000785 ... P80428 30177756
    2655 5nbl:B (2.8) BS01 ATP ? GO:0000785 ... P80428 30177756
    2656 5nbm:A (3.4) BS01 ATP ? GO:0000785 ... P80428 30177756
    2657 5nbm:B (3.4) BS01 ATP ? GO:0000785 ... P80428 30177756
    2658 5nbm:C (3.4) BS01 ATP 3.6.4.- GO:0000011 ... P60010 30177756
    2659 5nbm:D (3.4) BS01 ATP 3.6.4.- GO:0000011 ... P60010 30177756
    2660 5nbn:A (4.0) BS01 ATP ? GO:0000785 ... P80428 30177756
    2661 5nbn:B (4.0) BS01 ATP ? GO:0000785 ... P80428 30177756
    2662 5nbn:C (4.0) BS01 ATP 3.6.4.- GO:0000011 ... P60010 30177756
    2663 5nbn:D (4.0) BS01 ATP 3.6.4.- GO:0000011 ... P60010 30177756
    2664 5nro:A (3.25) BS01 ATP ? GO:0005515 ... P0A6Y8 29290615
    2665 5nug:A (3.8) BS02 ATP ? GO:0003723 ... Q14204 28602352
    2666 5nug:B (3.8) BS02 ATP ? GO:0003723 ... Q14204 28602352
    2667 5nwl:A (3.93) BS01 ATP ? GO:0000150 ... Q06609 29507080
    2668 5nwl:A (3.93) BS02 ATP ? GO:0000150 ... Q06609 29507080
    2669 5nwl:B (3.93) BS02 ATP ? GO:0000150 ... Q06609 29507080
    2670 5nwl:B (3.93) BS03 ATP ? GO:0000150 ... Q06609 29507080
    2671 5nwl:C (3.93) BS02 ATP ? GO:0000150 ... Q06609 29507080
    2672 5nwl:C (3.93) BS03 ATP ? GO:0000150 ... Q06609 29507080
    2673 5nwl:D (3.93) BS02 ATP ? GO:0000150 ... Q06609 29507080
    2674 5nwl:D (3.93) BS03 ATP ? GO:0000150 ... Q06609 29507080
    2675 5nwl:E (3.93) BS02 ATP ? GO:0000150 ... Q06609 29507080
    2676 5nwl:E (3.93) BS03 ATP ? GO:0000150 ... Q06609 29507080
    2677 5nwl:F (3.93) BS01 ATP ? GO:0000150 ... Q06609 29507080
    2678 5nwl:F (3.93) BS02 ATP ? GO:0000150 ... Q06609 29507080
    2679 5nwl:G (3.93) BS01 ATP ? GO:0000150 ... Q06609 29507080
    2680 5nwl:H (3.93) BS01 ATP ? GO:0000150 ... Q06609 29507080
    2681 5nwl:H (3.93) BS02 ATP ? GO:0000150 ... Q06609 29507080
    2682 5nwl:I (3.93) BS02 ATP ? GO:0000150 ... Q06609 29507080
    2683 5nwl:I (3.93) BS03 ATP ? GO:0000150 ... Q06609 29507080
    2684 5nwl:J (3.93) BS02 ATP ? GO:0000150 ... Q06609 29507080
    2685 5nwl:J (3.93) BS03 ATP ? GO:0000150 ... Q06609 29507080
    2686 5nwl:K (3.93) BS01 ATP ? GO:0000150 ... Q06609 29507080
    2687 5nwl:K (3.93) BS02 ATP ? GO:0000150 ... Q06609 29507080
    2688 5nwl:L (3.93) BS02 ATP ? GO:0000150 ... Q06609 29507080
    2689 5nwl:L (3.93) BS03 ATP ? GO:0000150 ... Q06609 29507080
    2690 5nwl:M (3.93) BS01 ATP ? GO:0000150 ... Q06609 29507080
    2691 5nwl:M (3.93) BS02 ATP ? GO:0000150 ... Q06609 29507080
    2692 5nwl:N (3.93) BS01 ATP ? GO:0000150 ... Q06609 29507080
    2693 5o5w:A (1.7) BS01 ATP ? GO:0005737 ... P84308 28912485
    2694 5o6m:A (2.3) BS01 ATP 2.7.4.- GO:0006797 ... M9XB82 29531036
    2695 5o6m:B (2.3) BS01 ATP 2.7.4.- GO:0006797 ... M9XB82 29531036
    2696 5o6m:C (2.3) BS01 ATP 2.7.4.- GO:0006797 ... M9XB82 29531036
    2697 5o6m:D (2.3) BS01 ATP 2.7.4.- GO:0006797 ... M9XB82 29531036
    2698 5obj:A (2.901) BS01 ATP 2.7.11.1 GO:0000212 ... O14965 28787041
    2699 5ofb:A (2.02) BS02 ATP 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    2700 5ofb:B (2.02) BS02 ATP 3.6.1.- GO:0008270 ... Q9Y6X9 29440755
    2701 5oiu:A (2.44) BS01 ATP ? N/A Q5SLC9 30232337
    2702 5oiu:B (2.44) BS01 ATP ? N/A Q5SLC9 30232337
    2703 5oiu:C (2.44) BS01 ATP ? N/A Q5SLC9 30232337
    2704 5oiu:D (2.44) BS01 ATP ? N/A Q5SLC9 30232337
    2705 5oiu:E (2.44) BS01 ATP ? N/A Q5SLC9 30232337
    2706 5oiu:F (2.44) BS01 ATP ? N/A Q5SLC9 30232337
    2707 5os7:A (1.66) BS03 ATP 2.7.11.1 GO:0004672 ... P68400 29732088
    2708 5os7:B (1.66) BS02 ATP 2.7.11.1 GO:0004672 ... P68400 29732088
    2709 5os8:A (1.55) BS04 ATP 2.7.11.1 GO:0004672 ... P68400 29732088
    2710 5osp:A (1.91) BS01 ATP 2.7.11.1 GO:0004672 ... P68400 29732088
    2711 5osr:A (1.57) BS01 ATP 2.7.11.1 GO:0004672 ... P68400 29732088
    2712 5otr:A (1.52) BS03 ATP 2.7.11.1 GO:0004672 ... P68400 29732088
    2713 5svk:A (2.773) BS02 ATP ? GO:0001614 ... P56373 27626375 PDBbind: -logKd/Ki=8.48, Kd=3.3nM
    BindingDB: EC50=340nM
    2714 5svk:B (2.773) BS02 ATP ? GO:0001614 ... P56373 27626375 BindingDB: EC50=340nM
    2715 5svl:A (2.9) BS01 ATP ? GO:0001614 ... P56373 27626375 PDBbind: -logKd/Ki=8.55, Kd=2.8nM
    2716 5svl:B (2.9) BS01 ATP ? GO:0001614 ... P56373 27626375
    2717 5svm:B (3.093) BS01 ATP ? GO:0001614 ... P56373 27626375
    2718 5svp:B (3.298) BS01 ATP ? GO:0001614 ... P56373 27626375
    2719 5t0c:AA (3.8) BS01 ATP ? GO:0000502 ... P35998 27791164
    2720 5t0c:AD (3.8) BS01 ATP ? GO:0000502 ... P43686 27791164
    2721 5t0c:AE (3.8) BS01 ATP ? GO:0000502 ... P62333 27791164
    2722 5t0c:AE (3.8) BS02 ATP ? GO:0000502 ... P62333 27791164
    2723 5t0c:AF (3.8) BS01 ATP ? GO:0000502 ... P17980 27791164
    2724 5t0c:AF (3.8) BS02 ATP ? GO:0000502 ... P17980 27791164
    2725 5t0c:BA (3.8) BS01 ATP ? GO:0000502 ... P35998 27791164
    2726 5t0c:BD (3.8) BS01 ATP ? GO:0000502 ... P43686 27791164
    2727 5t0c:BE (3.8) BS01 ATP ? GO:0000502 ... P62333 27791164
    2728 5t0c:BE (3.8) BS02 ATP ? GO:0000502 ... P62333 27791164
    2729 5t0c:BF (3.8) BS01 ATP ? GO:0000502 ... P17980 27791164
    2730 5t0c:BF (3.8) BS02 ATP ? GO:0000502 ... P17980 27791164
    2731 5t0g:A (4.4) BS01 ATP ? GO:0000502 ... P35998 27791164
    2732 5t0g:B (4.4) BS01 ATP ? GO:0000502 ... P62191 27791164
    2733 5t0g:B (4.4) BS02 ATP ? GO:0000502 ... P62191 27791164
    2734 5t0g:C (4.4) BS01 ATP ? GO:0000502 ... P62195 27791164
    2735 5t0g:D (4.4) BS01 ATP ? GO:0000502 ... P43686 27791164
    2736 5t0g:E (4.4) BS01 ATP ? GO:0000502 ... P62333 27791164
    2737 5t0g:E (4.4) BS02 ATP ? GO:0000502 ... P62333 27791164
    2738 5t0g:F (4.4) BS01 ATP ? GO:0000502 ... P17980 27791164
    2739 5t0g:F (4.4) BS02 ATP ? GO:0000502 ... P17980 27791164
    2740 5t0i:A (8.0) BS01 ATP ? GO:0000502 ... P35998 27791164
    2741 5t0i:B (8.0) BS01 ATP ? GO:0000502 ... P62191 27791164
    2742 5t0i:D (8.0) BS01 ATP ? GO:0000502 ... P43686 27791164
    2743 5t0i:E (8.0) BS01 ATP ? GO:0000502 ... P62333 27791164
    2744 5t0i:F (8.0) BS01 ATP ? GO:0000502 ... P17980 27791164
    2745 5t0i:F (8.0) BS02 ATP ? GO:0000502 ... P17980 27791164
    2746 5t0j:A (8.0) BS01 ATP ? GO:0000502 ... P35998 27791164
    2747 5t0j:A (8.0) BS02 ATP ? GO:0000502 ... P35998 27791164
    2748 5t0j:D (8.0) BS01 ATP ? GO:0000502 ... P43686 27791164
    2749 5t0j:E (8.0) BS01 ATP ? GO:0000502 ... P62333 27791164
    2750 5t0j:E (8.0) BS02 ATP ? GO:0000502 ... P62333 27791164
    2751 5t0j:F (8.0) BS01 ATP ? GO:0000502 ... P17980 27791164
    2752 5t0j:F (8.0) BS02 ATP ? GO:0000502 ... P17980 27791164
    2753 5t4o:A (6.9) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    2754 5t4o:B (6.9) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    2755 5t4o:C (6.9) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    2756 5t4p:A (7.77) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    2757 5t4p:B (7.77) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    2758 5t4p:C (7.77) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    2759 5t4q:A (8.53) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    2760 5t4q:B (8.53) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    2761 5t4q:C (8.53) BS01 ATP 7.1.2.2 GO:0005515 ... P0ABB0 28001127
    2762 5t9v:B (4.4) BS01 ATP ? GO:0005216 ... P11716 27662087
    2763 5t9v:E (4.4) BS01 ATP ? GO:0005216 ... P11716 27662087
    2764 5t9v:G (4.4) BS01 ATP ? GO:0005216 ... P11716 27662087
    2765 5t9v:I (4.4) BS01 ATP ? GO:0005216 ... P11716 27662087
    2766 5ta3:B (4.4) BS01 ATP ? GO:0005216 ... P11716 27662087
    2767 5ta3:E (4.4) BS01 ATP ? GO:0005216 ... P11716 27662087
    2768 5ta3:G (4.4) BS01 ATP ? GO:0005216 ... P11716 27662087
    2769 5ta3:I (4.4) BS01 ATP ? GO:0005216 ... P11716 27662087
    2770 5tal:B (4.3) BS01 ATP ? GO:0005216 ... P11716 27662087
    2771 5tal:E (4.3) BS01 ATP ? GO:0005216 ... P11716 27662087
    2772 5tal:G (4.3) BS01 ATP ? GO:0005216 ... P11716 27662087
    2773 5tal:I (4.3) BS01 ATP ? GO:0005216 ... P11716 27662087
    2774 5tam:B (4.3) BS01 ATP ? GO:0005216 ... P11716 27662087
    2775 5tam:E (4.3) BS01 ATP ? GO:0005216 ... P11716 27662087
    2776 5tam:G (4.3) BS01 ATP ? GO:0005216 ... P11716 27662087
    2777 5tam:I (4.3) BS01 ATP ? GO:0005216 ... P11716 27662087
    2778 5tan:B (4.3) BS01 ATP ? GO:0005216 ... P11716 27662087
    2779 5tan:E (4.3) BS01 ATP ? GO:0005216 ... P11716 27662087
    2780 5tan:G (4.3) BS01 ATP ? GO:0005216 ... P11716 27662087
    2781 5tan:I (4.3) BS01 ATP ? GO:0005216 ... P11716 27662087
    2782 5tap:B (4.4) BS01 ATP ? GO:0005216 ... P11716 27662087
    2783 5tap:E (4.4) BS01 ATP ? GO:0005216 ... P11716 27662087
    2784 5tap:G (4.4) BS01 ATP ? GO:0005216 ... P11716 27662087
    2785 5tap:I (4.4) BS01 ATP ? GO:0005216 ... P11716 27662087
    2786 5taq:B (4.1) BS01 ATP ? GO:0005216 ... P11716 27662087
    2787 5taq:E (4.1) BS01 ATP ? GO:0005216 ... P11716 27662087
    2788 5taq:G (4.1) BS01 ATP ? GO:0005216 ... P11716 27662087
    2789 5taq:I (4.1) BS01 ATP ? GO:0005216 ... P11716 27662087
    2790 5tas:B (6.2) BS01 ATP ? GO:0005216 ... P11716 27662087
    2791 5tas:E (6.2) BS01 ATP ? GO:0005216 ... P11716 27662087
    2792 5tas:G (6.2) BS01 ATP ? GO:0005216 ... P11716 27662087
    2793 5tas:I (6.2) BS01 ATP ? GO:0005216 ... P11716 27662087
    2794 5tat:B (4.8) BS01 ATP ? GO:0005216 ... P11716 27662087
    2795 5tat:E (4.8) BS01 ATP ? GO:0005216 ... P11716 27662087
    2796 5tat:G (4.8) BS01 ATP ? GO:0005216 ... P11716 27662087
    2797 5tat:I (4.8) BS01 ATP ? GO:0005216 ... P11716 27662087
    2798 5tau:B (6.2) BS01 ATP ? GO:0005216 ... P11716 27662087
    2799 5tau:E (6.2) BS01 ATP ? GO:0005216 ... P11716 27662087
    2800 5tau:G (6.2) BS01 ATP ? GO:0005216 ... P11716 27662087
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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