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BioLiP Library
Download all results in tab-seperated text for 31 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1xie:A (1.7) BS01 ASO 5.3.1.5 GO:0000287 ... P24300 15299449
    2 2asv:A (1.95) BS05 ASO 2.4.1.1 GO:0004645 ... P00490 N/A
    3 2asv:B (1.95) BS05 ASO 2.4.1.1 GO:0004645 ... P00490 N/A
    4 2ec9:L (2.0) BS01 ASO 3.4.21.21 GO:0005509 ... P08709 17505107
    5 3guh:A (2.79) BS03 ASO 2.4.1.21 GO:0004373 ... P0A6U8 19244233
    6 3u2x:A (1.77) BS03 ASO 2.4.1.186 GO:0016757 ... P46976 N/A
    7 3u2x:B (1.77) BS03 ASO 2.4.1.186 GO:0016757 ... P46976 N/A
    8 4gn8:A (1.7) BS02 ASO 3.1.1.17 GO:0001822 ... Q64374 23349732
    9 4gn8:A (1.7) BS03 ASO 3.1.1.17 GO:0001822 ... Q64374 23349732
    10 4gn8:A (1.7) BS04 ASO 3.1.1.17 GO:0001822 ... Q64374 23349732
    11 4gn8:A (1.7) BS05 ASO 3.1.1.17 GO:0001822 ... Q64374 23349732
    12 4gn8:B (1.7) BS02 ASO 3.1.1.17 GO:0001822 ... Q64374 23349732
    13 4gn8:B (1.7) BS03 ASO 3.1.1.17 GO:0001822 ... Q64374 23349732
    14 4gn8:B (1.7) BS04 ASO 3.1.1.17 GO:0001822 ... Q64374 23349732
    15 4gn8:B (1.7) BS05 ASO 3.1.1.17 GO:0001822 ... Q64374 23349732
    16 4gn8:B (1.7) BS06 ASO 3.1.1.17 GO:0001822 ... Q64374 23349732
    17 4gnc:A (1.749) BS02 ASO 3.1.1.17 GO:0001822 ... Q15493 23349732
    18 4gnc:A (1.749) BS03 ASO 3.1.1.17 GO:0001822 ... Q15493 23349732
    19 4gnc:B (1.749) BS02 ASO 3.1.1.17 GO:0001822 ... Q15493 23349732
    20 4gnc:B (1.749) BS03 ASO 3.1.1.17 GO:0001822 ... Q15493 23349732
    21 4gnc:B (1.749) BS04 ASO 3.1.1.17 GO:0001822 ... Q15493 23349732
    22 6l0z:A (1.6) BS05 ASO ? GO:0008643 ... P19576 N/A
    23 6l0z:A (1.6) BS06 ASO ? GO:0008643 ... P19576 N/A
    24 6lx1:A (2.03) BS01 ASO 2.4.1.25 GO:0004134 ... Q06801 32808707
    25 6m6t:A (2.75) BS01 ASO 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    26 6m6t:B (2.75) BS01 ASO 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    27 6m6t:C (2.75) BS01 ASO 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    28 6m6t:D (2.75) BS01 ASO 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    29 6m6t:E (2.75) BS01 ASO 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    30 6m6t:F (2.75) BS01 ASO 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    31 6m6t:H (2.75) BS01 ASO 2.4.1.25 GO:0004134 ... A0A0E1EIJ0 33762620
    Reference:
    • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
    • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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