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BioLiP
Download all results in tab-seperated text for 131 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 11as:A (2.5) BS01 ASN 6.3.1.1 GO:0004071 ... P00963 9437423
    2 11as:B (2.5) BS01 ASN 6.3.1.1 GO:0004071 ... P00963 9437423
    3 12as:A (2.2) BS01 ASN 6.3.1.1 GO:0004071 ... P00963 9437423
    4 12as:B (2.2) BS01 ASN 6.3.1.1 GO:0004071 ... P00963 9437423
    5 1pok:A (2.7) BS03 ASN 3.4.19.- GO:0005737 ... P39377 12946361
    6 1pok:B (2.7) BS03 ASN 3.4.19.- GO:0005737 ... P39377 12946361
    7 2cg4:A (2.4) BS01 ASN ? GO:0003677 ... P0ACI6 16528101
    8 2cg4:B (2.4) BS01 ASN ? GO:0003677 ... P0ACI6 16528101
    9 2dqn:A (2.55) BS01 ASN 6.3.5.7 GO:0003824 ... P63488 16809541
    10 2fgu:A (2.0) BS01 ASN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 16809296 PDBbind: -logKd/Ki=9.18, Kd=0.66nM
    11 2fgv:A (1.5) BS02 ASN 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16    		 GO:0004190 ... P03369 16809296 PDBbind: -logKd/Ki=6.12, Kd=760nM
    12 2gl9:B (2.0) BS01 ASN 3.5.1.26 GO:0016787 ... Q47898 17157318
    13 2gl9:D (2.0) BS01 ASN 3.5.1.26 GO:0016787 ... Q47898 17157318
    14 2him:A (1.82) BS02 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    15 2him:A (1.82) BS03 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    16 2him:B (1.82) BS02 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    17 2him:B (1.82) BS03 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    18 2him:C (1.82) BS02 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    19 2him:C (1.82) BS03 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    20 2him:D (1.82) BS02 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    21 2him:D (1.82) BS03 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    22 2p2n:A (1.9) BS02 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    23 2p2n:A (1.9) BS03 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    24 2p2n:B (1.9) BS02 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    25 2p2n:B (1.9) BS03 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    26 2p2n:C (1.9) BS02 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    27 2p2n:C (1.9) BS03 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    28 2p2n:D (1.9) BS02 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    29 2p2n:D (1.9) BS03 ASN 3.5.1.1 GO:0004067 ... P0A962 17451745
    30 3gfv:B (1.75) BS01 ASN ? GO:0005886 ... P94421 19955416
    31 3h0l:A (2.3) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    32 3h0l:D (2.3) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    33 3h0l:G (2.3) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    34 3h0l:J (2.3) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    35 3h0l:M (2.3) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    36 3h0l:P (2.3) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    37 3h0l:S (2.3) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    38 3h0l:V (2.3) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    39 3h0r:A (3.0) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    40 3h0r:D (3.0) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    41 3h0r:G (3.0) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    42 3h0r:J (3.0) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    43 3h0r:M (3.0) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    44 3h0r:P (3.0) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    45 3h0r:S (3.0) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    46 3h0r:V (3.0) BS01 ASN 6.3.5.7 GO:0003824 ... O66610 19520089
    47 3kxa:A (2.8) BS01 ASN ? GO:0003677 ... Q5F9C2 20196080
    48 3kxa:B (2.8) BS01 ASN ? GO:0003677 ... Q5F9C2 20196080
    49 3kxa:C (2.8) BS01 ASN ? GO:0003677 ... Q5F9C2 20196080
    50 3kxa:D (2.8) BS01 ASN ? GO:0003677 ... Q5F9C2 20196080
    51 3lfy:C (2.6) BS02 ASN 3.4.22.2 GO:0006508 ... P00784 21416241
    52 3p8y:A (1.8) BS01 ASN ? GO:0000166 ... Q9V228 21820443
    53 3p8y:B (1.8) BS01 ASN ? GO:0000166 ... Q9V228 21820443
    54 3rl6:A (2.0) BS01 ASN ? GO:0000166 ... Q9V228 21820443
    55 3rl6:B (2.0) BS01 ASN ? GO:0000166 ... Q9V228 21820443
    56 4m65:A (1.6) BS06 ASN 3.4.24.- GO:0004222 ... V5IRV7 N/A
    57 5dnc:A (2.01) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    58 5dnc:B (2.01) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    59 5dnc:C (2.01) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    60 5dnc:D (2.01) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    61 5dnd:A (2.29) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    62 5dnd:B (2.29) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    63 5dnd:C (2.29) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    64 5dnd:D (2.29) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    65 5dne:A (2.39) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    66 5dne:B (2.39) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    67 5dne:C (2.39) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    68 5dne:D (2.39) BS01 ASN 3.5.1.1 GO:0004067 ... H0W0T5 26733195
    69 5k62:A (1.899) BS01 ASN ? GO:0008418 ... N1P8Q8 27791147
    70 5k63:A (2.5) BS01 ASN ? GO:0008418 ... N1P8Q8 27791147
    71 5k66:A (2.002) BS01 ASN ? GO:0008418 ... N1P8Q8 27791147
    72 6ehj:A (2.1) BS02 ASN 2.3.1.-
    2.3.1.97    		 GO:0004379 ... P30419 32111831
    73 6ehj:B (2.1) BS02 ASN 2.3.1.-
    2.3.1.97    		 GO:0004379 ... P30419 32111831
    74 6fxg:A (1.7) BS01 ASN ? GO:0015276 ... Q9CES5 N/A
    75 6fxg:B (1.7) BS01 ASN ? GO:0015276 ... Q9CES5 N/A
    76 6fxg:C (1.7) BS01 ASN ? GO:0015276 ... Q9CES5 N/A
    77 6gyp:B (3.6) BS03 ASN ? GO:0000775 ... P40969 30478265
    78 6h20:A (1.4) BS01 ASN ? GO:0005576 ... P96257 30065086
    79 6ior:A (2.5) BS01 ASN ? N/A Q9KQ43 30745373 MOAD: Kd=6.3uM
    PDBbind: -logKd/Ki=4.31, Kd=49.5uM
    80 6ior:B (2.5) BS01 ASN ? N/A Q9KQ43 30745373 MOAD: Kd=6.3uM
    81 6ior:C (2.5) BS01 ASN ? N/A Q9KQ43 30745373 MOAD: Kd=6.3uM
    82 6ior:D (2.5) BS01 ASN ? N/A Q9KQ43 30745373 MOAD: Kd=6.3uM
    83 6nxc:A (1.74) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    84 6nxc:B (1.74) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    85 6nxc:C (1.74) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    86 6nxc:D (1.74) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    87 6nxd:A (1.9) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    88 6nxd:B (1.9) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    89 6nxd:C (1.9) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    90 6nxd:D (1.9) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    91 6pa3:A (1.65) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    92 6pa3:B (1.65) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    93 6pa3:C (1.65) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    94 6pa3:D (1.65) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    95 6pa5:A (2.0) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    96 6pa5:B (2.0) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    97 6pa5:C (2.0) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    98 6pa5:D (2.0) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    99 6pa5:E (2.0) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    100 6pa5:F (2.0) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    101 6pa5:G (2.0) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    102 6pa5:H (2.0) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    103 6pa6:A (2.12) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    104 6pa6:B (2.12) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    105 6pa6:C (2.12) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    106 6pa6:D (2.12) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    107 6pa8:A (1.9) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    108 6pa8:B (1.9) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    109 6pa8:C (1.9) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    110 6pa8:D (1.9) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    111 6pa9:A (1.88) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    112 6pa9:B (1.88) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 31423681
    113 6v2a:A (2.0) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 32364696
    114 6v2a:B (2.0) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 32364696
    115 6v2a:C (2.0) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 32364696
    116 6v2a:D (2.0) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 32364696
    117 6v2b:A (2.05) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 32364696
    118 6v2b:B (2.05) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 32364696
    119 6v2b:C (2.05) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 32364696
    120 6v2b:D (2.05) BS01 ASN 3.5.1.1 GO:0004067 ... P00805 32364696
    121 6v74:C (2.32) BS01 ASN 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P14618 32144209 MOAD: Kd=27uM
    122 6x5u:G (3.2) BS01 ASN 2.4.1.68 GO:0000139 ... Q9BYC5 33004438
    123 7c8x:A (1.994) BS01 ASN N/A GO:0004067 ... N/A 33371681
    124 7c8x:B (1.994) BS01 ASN N/A GO:0004067 ... N/A 33371681
    125 7dkd:A (1.92) BS01 ASN 3.4.14.- GO:0008239 ... B4SLK2 33846449
    126 7dkd:B (1.92) BS01 ASN 3.4.14.- GO:0008239 ... B4SLK2 33846449
    127 8h46:A (1.8) BS02 ASN ? GO:0004067 ... A0A6I7U6Y2 N/A
    128 8h46:B (1.8) BS03 ASN ? GO:0004067 ... A0A6I7U6Y2 N/A
    129 8h48:A (1.8) BS03 ASN ? GO:0004067 ... A0A6I7U6Y2 N/A
    130 8h48:B (1.8) BS03 ASN ? GO:0004067 ... A0A6I7U6Y2 N/A
    131 8h4b:A (2.0) BS03 ASN ? GO:0004067 ... A0A6I7U6Y2 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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