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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 581 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b4b:A (2.2) BS01 ARG ? GO:0003700 ... O31408 10331868
    2 1b4b:A (2.2) BS02 ARG ? GO:0003700 ... O31408 10331868
    3 1b4b:B (2.2) BS01 ARG ? GO:0003700 ... O31408 10331868
    4 1b4b:B (2.2) BS02 ARG ? GO:0003700 ... O31408 10331868
    5 1b4b:C (2.2) BS01 ARG ? GO:0003700 ... O31408 10331868
    6 1b4b:C (2.2) BS02 ARG ? GO:0003700 ... O31408 10331868
    7 1bcr:A (2.5) BS02 ARG 3.4.16.6 GO:0004185 ... P08819 8636973
    8 1bcs:A (2.08) BS02 ARG 3.4.16.6 GO:0004185 ... P08819 8636973
    9 1bs2:A (2.75) BS01 ARG 6.1.1.19 GO:0000166 ... Q05506 9736621
    10 1f7u:A (2.2) BS02 ARG 6.1.1.19 GO:0000166 ... Q05506 11060012
    11 1fol:A (2.2) BS02 ARG 1.14.13.39 GO:0004517 ... P29473 11331003
    12 1fol:B (2.2) BS03 ARG 1.14.13.39 GO:0004517 ... P29473 11331003
    13 1foo:A (2.0) BS03 ARG 1.14.13.39 GO:0004517 ... P29473 11331003
    14 1foo:B (2.0) BS03 ARG 1.14.13.39 GO:0004517 ... P29473 11331003
    15 1fop:A (2.3) BS03 ARG 1.14.13.39 GO:0004517 ... P29473 11331003
    16 1fop:B (2.3) BS05 ARG 1.14.13.39 GO:0004517 ... P29473 11331003
    17 1hsb:A (1.9) BS02 ARG ? N/A P04439 1448153
    18 1kh3:A (2.15) BS02 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    19 1kh3:B (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    20 1kh3:C (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    21 1kh3:D (2.15) BS01 ARG 6.3.4.5 GO:0000050 ... P59846 12684518
    22 1kor:A (1.95) BS02 ARG 6.3.4.5 GO:0000050 ... P59846 11844799
    23 1kor:B (1.95) BS02 ARG 6.3.4.5 GO:0000050 ... P59846 11844799
    24 1kor:C (1.95) BS02 ARG 6.3.4.5 GO:0000050 ... P59846 11844799
    25 1kor:D (1.95) BS02 ARG 6.3.4.5 GO:0000050 ... P59846 11844799
    26 1laf:E (2.06) BS01 ARG ? GO:0006865 ... P02911 7929349 MOAD: Kd=14nM
    PDBbind: -logKd/Ki=7.85, Kd=14nM
    27 1m15:A (1.2) BS01 ARG 2.7.3.3 GO:0003824 ... P51541 12454458
    28 1m7v:A (1.95) BS01 ARG 1.14.14.47 GO:0004517 ... O34453 12220171
    29 1n2n:A (2.4) BS04 ARG 1.14.13.39 GO:0004517 ... P29477 12464241
    30 1n2n:B (2.4) BS03 ARG 1.14.13.39 GO:0004517 ... P29477 12464241
    31 1nod:A (2.6) BS01 ARG 1.14.13.39 GO:0004517 ... P29477 9516116
    32 1nod:B (2.6) BS01 ARG 1.14.13.39 GO:0004517 ... P29477 9516116
    33 1nsi:A (2.55) BS04 ARG 1.14.13.39 GO:0004517 ... P35228 10409685
    34 1nsi:B (2.55) BS05 ARG 1.14.13.39 GO:0004517 ... P35228 10409685
    35 1nsi:C (2.55) BS04 ARG 1.14.13.39 GO:0004517 ... P35228 10409685
    36 1nsi:D (2.55) BS05 ARG 1.14.13.39 GO:0004517 ... P35228 10409685
    37 1om4:A (1.75) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 N/A
    38 1om4:B (1.75) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 N/A
    39 1p50:A (2.8) BS02 ARG 2.7.3.3 GO:0003824 ... P51541 12732621
    40 1pq5:A (0.85) BS01 ARG 3.4.21.4 GO:0004252 ... P35049 12937176
    41 1pq7:A (0.8) BS01 ARG 3.4.21.4 GO:0004252 ... P35049 12937176
    42 1s9r:A (1.6) BS01 ARG 3.5.3.6 GO:0005737 ... P23793 15062088
    43 1s9r:B (1.6) BS01 ARG 3.5.3.6 GO:0005737 ... P23793 15062088
    44 1sd0:A (2.3) BS02 ARG 2.7.3.3 GO:0003824 ... P51541 15236576
    45 1t5g:A (2.4) BS04 ARG 3.5.3.1 GO:0000050 ... P07824 15248756
    46 1t5g:B (2.4) BS04 ARG 3.5.3.1 GO:0000050 ... P07824 15248756
    47 1t5g:C (2.4) BS04 ARG 3.5.3.1 GO:0000050 ... P07824 15248756
    48 1xxa:A (2.2) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    49 1xxa:A (2.2) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    50 1xxa:B (2.2) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    51 1xxa:B (2.2) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    52 1xxa:C (2.2) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    53 1xxa:C (2.2) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    54 1xxa:D (2.2) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    55 1xxa:D (2.2) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    56 1xxa:E (2.2) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    57 1xxa:E (2.2) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    58 1xxa:F (2.2) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    59 1xxa:F (2.2) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    60 1xxb:A (2.6) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    61 1xxb:A (2.6) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    62 1xxb:A (2.6) BS03 ARG ? GO:0003700 ... P0A6D0 8594204
    63 1xxb:B (2.6) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    64 1xxb:B (2.6) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    65 1xxb:C (2.6) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    66 1xxb:C (2.6) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    67 1xxb:D (2.6) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    68 1xxb:D (2.6) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    69 1xxb:E (2.6) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    70 1xxb:E (2.6) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    71 1xxb:F (2.6) BS01 ARG ? GO:0003700 ... P0A6D0 8594204
    72 1xxb:F (2.6) BS02 ARG ? GO:0003700 ... P0A6D0 8594204
    73 1zvl:A (2.5) BS04 ARG 1.14.13.39 GO:0004517 ... P29476 16033258
    74 1zvl:B (2.5) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 16033258
    75 2a9g:A (2.3) BS01 ARG 3.5.3.6 GO:0005737 ... P13981 16091358
    76 2a9g:B (2.3) BS01 ARG 3.5.3.6 GO:0005737 ... P13981 16091358
    77 2a9g:C (2.3) BS01 ARG 3.5.3.6 GO:0005737 ... P13981 16091358
    78 2a9g:D (2.3) BS01 ARG 3.5.3.6 GO:0005737 ... P13981 16091358
    79 2an2:A (2.6) BS01 ARG 1.14.14.47 GO:0004517 ... O34453 16126221
    80 2bd2:A (1.7) BS02 ARG 3.4.21.36 GO:0004252 ... P00772 16754679
    81 2bd7:A (1.6) BS02 ARG 3.4.21.36 GO:0004252 ... P00772 16754679
    82 2bd8:A (1.7) BS02 ARG 3.4.21.36 GO:0004252 ... P00772 16754679
    83 2bty:A (2.75) BS01 ARG 2.7.2.8 GO:0003991 ... Q9X2A4 16376937
    84 2bty:B (2.75) BS01 ARG 2.7.2.8 GO:0003991 ... Q9X2A4 16376937
    85 2bty:C (2.75) BS01 ARG 2.7.2.8 GO:0003991 ... Q9X2A4 16376937
    86 2cki:A (1.7) BS01 ARG 3.4.24.- GO:0008237 ... Q8TL28 16627477
    87 2cki:B (1.7) BS01 ARG 3.4.24.- GO:0008237 ... Q8TL28 16627477
    88 2e9f:A (2.8) BS01 ARG 4.3.2.1 GO:0003824 ... Q5SLL0 N/A
    89 2e9f:B (2.8) BS01 ARG 4.3.2.1 GO:0003824 ... Q5SLL0 N/A
    90 2e9f:C (2.8) BS01 ARG 4.3.2.1 GO:0003824 ... Q5SLL0 N/A
    91 2e9f:D (2.8) BS01 ARG 4.3.2.1 GO:0003824 ... Q5SLL0 N/A
    92 2fc1:A (2.0) BS02 ARG 1.14.14.47 GO:0004517 ... O34453 16489746
    93 2flq:A (3.2) BS01 ARG 1.14.13.39 GO:0004517 ... Q5KZC5 16407211
    94 2flq:B (3.2) BS01 ARG 1.14.13.39 GO:0004517 ... Q5KZC5 16407211
    95 2g6h:A (2.0) BS04 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    96 2g6h:B (2.0) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    97 2g6i:A (1.9) BS04 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    98 2g6i:B (1.9) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    99 2g6j:A (2.3) BS04 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    100 2g6j:B (2.3) BS04 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    101 2g6k:A (2.0) BS04 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    102 2g6k:B (2.0) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    103 2g6l:A (2.05) BS04 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    104 2g6l:B (2.05) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    105 2g6m:A (1.85) BS04 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    106 2g6m:B (1.85) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    107 2g6n:A (1.9) BS04 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    108 2g6n:B (1.9) BS05 ARG 1.14.13.39 GO:0004517 ... P29476 16804678
    109 2g6o:A (1.9) BS03 ARG 1.14.13.39 GO:0004517 ... P29473 16804678
    110 2g6o:B (1.9) BS03 ARG 1.14.13.39 GO:0004517 ... P29473 16804678
    111 2nse:A (2.34) BS01 ARG 1.14.13.39 GO:0004517 ... P29473 9875848
    112 2nse:B (2.34) BS03 ARG 1.14.13.39 GO:0004517 ... P29473 9875848
    113 2p5m:A (1.95) BS01 ARG ? GO:0003700 ... P17893 18007040
    114 2p5m:A (1.95) BS02 ARG ? GO:0003700 ... P17893 18007040
    115 2p5m:B (1.95) BS01 ARG ? GO:0003700 ... P17893 18007040
    116 2p5m:B (1.95) BS02 ARG ? GO:0003700 ... P17893 18007040
    117 2p5m:C (1.95) BS01 ARG ? GO:0003700 ... P17893 18007040
    118 2p5m:C (1.95) BS02 ARG ? GO:0003700 ... P17893 18007040
    119 2q2a:A (1.79) BS01 ARG ? GO:0005886 ... D0VWX8 18022195 MOAD: Kd=0.039uM
    PDBbind: -logKd/Ki=7.41, Kd=0.039uM
    120 2q2a:B (1.79) BS01 ARG ? GO:0005886 ... D0VWX8 18022195 MOAD: Kd=0.039uM
    121 2q2a:C (1.79) BS01 ARG ? GO:0005886 ... D0VWX8 18022195 MOAD: Kd=0.039uM
    122 2q2a:D (1.79) BS01 ARG ? GO:0005886 ... D0VWX8 18022195 MOAD: Kd=0.039uM
    123 2rd5:A (2.51) BS01 ARG 2.7.2.8 GO:0003991 ... Q9SCL7 17913711
    124 2rd5:B (2.51) BS01 ARG 2.7.2.8 GO:0003991 ... Q9SCL7 17913711
    125 2wbo:A (1.3) BS01 ARG 1.14.11.41 GO:0005506 ... Q6WZB0 19490124
    126 2wbp:A (1.16) BS01 ARG 1.14.11.41 GO:0005506 ... Q6WZB0 19490124
    127 2wop:A (1.7) BS01 ARG ? GO:0015833 ... Q8KRB4 19941870
    128 2y7i:A (1.9) BS01 ARG ? GO:0006865 ... Q8ZKA9 21560168 PDBbind: -logKd/Ki=5.54, Kd=2.9uM
    129 2y7i:B (1.9) BS01 ARG ? GO:0006865 ... Q8ZKA9 21560168
    130 2z7c:A (2.8) BS01 ARG ? GO:0003676 ... O74101 18323660
    131 2z7c:B (2.8) BS01 ARG ? GO:0003676 ... O74101 18323660
    132 2z7c:C (2.8) BS01 ARG ? GO:0003676 ... O74101 18323660
    133 2zfz:A (1.85) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    134 2zfz:A (1.85) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    135 2zfz:B (1.85) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    136 2zfz:B (1.85) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    137 2zfz:C (1.85) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    138 2zfz:C (1.85) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    139 2zfz:C (1.85) BS03 ARG ? GO:0003700 ... P9WPY9 18703843
    140 2zfz:D (1.85) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    141 2zfz:D (1.85) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    142 2zfz:E (1.85) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    143 2zfz:E (1.85) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    144 2zfz:F (1.85) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    145 2zfz:F (1.85) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    146 2zfz:F (1.85) BS03 ARG ? GO:0003700 ... P9WPY9 18703843
    147 2zny:A (2.59) BS01 ARG ? GO:0003677 ... O59188 19004003
    148 2zny:B (2.59) BS01 ARG ? GO:0003677 ... O59188 19004003
    149 2zny:C (2.59) BS01 ARG ? GO:0003677 ... O59188 19004003
    150 2zny:C (2.59) BS02 ARG ? GO:0003677 ... O59188 19004003
    151 2zny:D (2.59) BS01 ARG ? GO:0003677 ... O59188 19004003
    152 2zny:D (2.59) BS02 ARG ? GO:0003677 ... O59188 19004003
    153 2zny:E (2.59) BS01 ARG ? GO:0003677 ... O59188 19004003
    154 2zny:E (2.59) BS02 ARG ? GO:0003677 ... O59188 19004003
    155 2zny:F (2.59) BS01 ARG ? GO:0003677 ... O59188 19004003
    156 2zny:F (2.59) BS02 ARG ? GO:0003677 ... O59188 19004003
    157 2zny:G (2.59) BS01 ARG ? GO:0003677 ... O59188 19004003
    158 2zny:H (2.59) BS01 ARG ? GO:0003677 ... O59188 19004003
    159 3a34:A (1.65) BS01 ARG 3.2.1.17 GO:0003796 ... P00698 N/A
    160 3a34:A (1.65) BS02 ARG 3.2.1.17 GO:0003796 ... P00698 N/A
    161 3a34:A (1.65) BS03 ARG 3.2.1.17 GO:0003796 ... P00698 N/A
    162 3a34:A (1.65) BS04 ARG 3.2.1.17 GO:0003796 ... P00698 N/A
    163 3agi:A (1.2) BS01 ARG 3.2.1.17 GO:0003796 ... P00698 21084280
    164 3agi:A (1.2) BS02 ARG 3.2.1.17 GO:0003796 ... P00698 21084280
    165 3agi:A (1.2) BS03 ARG 3.2.1.17 GO:0003796 ... P00698 21084280
    166 3b2p:A (2.0) BS02 ARG 3.4.11.2 GO:0004177 ... P04825 18416562
    167 3be7:A (2.3) BS01 ARG N/A GO:0016787 ... N/A 19281183
    168 3be7:B (2.3) BS01 ARG N/A GO:0016787 ... N/A 19281183
    169 3be7:C (2.3) BS01 ARG N/A GO:0016787 ... N/A 19281183
    170 3be7:D (2.3) BS01 ARG N/A GO:0016787 ... N/A 19281183
    171 3be7:E (2.3) BS01 ARG N/A GO:0016787 ... N/A 19281183
    172 3be7:F (2.3) BS01 ARG N/A GO:0016787 ... N/A 19281183
    173 3be7:G (2.3) BS01 ARG N/A GO:0016787 ... N/A 19281183
    174 3be7:H (2.3) BS01 ARG N/A GO:0016787 ... N/A 19281183
    175 3c7c:B (3.1) BS02 ARG 1.5.1.11 GO:0000166 ... Q9BHM6 18599075
    176 3cag:A (1.9) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    177 3cag:A (1.9) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    178 3cag:A (1.9) BS03 ARG ? GO:0003700 ... P9WPY9 18703843
    179 3cag:B (1.9) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    180 3cag:B (1.9) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    181 3cag:B (1.9) BS03 ARG ? GO:0003700 ... P9WPY9 18703843
    182 3cag:C (1.9) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    183 3cag:C (1.9) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    184 3cag:C (1.9) BS03 ARG ? GO:0003700 ... P9WPY9 18703843
    185 3cag:D (1.9) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    186 3cag:D (1.9) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    187 3cag:D (1.9) BS03 ARG ? GO:0003700 ... P9WPY9 18703843
    188 3cag:E (1.9) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    189 3cag:E (1.9) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    190 3cag:E (1.9) BS03 ARG ? GO:0003700 ... P9WPY9 18703843
    191 3cag:F (1.9) BS01 ARG ? GO:0003700 ... P9WPY9 18703843
    192 3cag:F (1.9) BS02 ARG ? GO:0003700 ... P9WPY9 18703843
    193 3cev:A (2.4) BS02 ARG 3.5.3.1 GO:0000050 ... P53608 10196128
    194 3cev:A (2.4) BS03 ARG 3.5.3.1 GO:0000050 ... P53608 10196128
    195 3cev:B (2.4) BS02 ARG 3.5.3.1 GO:0000050 ... P53608 10196128
    196 3cev:B (2.4) BS03 ARG 3.5.3.1 GO:0000050 ... P53608 10196128
    197 3cev:C (2.4) BS01 ARG 3.5.3.1 GO:0000050 ... P53608 10196128
    198 3cev:C (2.4) BS03 ARG 3.5.3.1 GO:0000050 ... P53608 10196128
    199 3cev:C (2.4) BS04 ARG 3.5.3.1 GO:0000050 ... P53608 10196128
    200 3cev:D (2.4) BS02 ARG 3.5.3.1 GO:0000050 ... P53608 10196128
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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