Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 59 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 2e2l:A (2.29) BS01 ARF 3.5.1.49 GO:0004328 ... O25836 17307742
    2 2e2l:C (2.29) BS01 ARF 3.5.1.49 GO:0004328 ... O25836 17307742
    3 2e2l:F (2.29) BS01 ARF 3.5.1.49 GO:0004328 ... O25836 17307742
    4 3ub8:A (1.42) BS01 ARF ? N/A B6JPK4 22705207
    5 3ub8:A (1.42) BS02 ARF ? N/A B6JPK4 22705207
    6 3ub8:A (1.42) BS03 ARF ? N/A B6JPK4 22705207
    7 3ub8:A (1.42) BS04 ARF ? N/A B6JPK4 22705207
    8 3ub8:B (1.42) BS01 ARF ? N/A B6JPK4 22705207
    9 3ub8:B (1.42) BS02 ARF ? N/A B6JPK4 22705207
    10 3ub8:B (1.42) BS03 ARF ? N/A B6JPK4 22705207
    11 3ub8:B (1.42) BS04 ARF ? N/A B6JPK4 22705207
    12 4m8l:A (2.37) BS02 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    13 4m8l:A (2.37) BS03 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    14 4m8l:A (2.37) BS04 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    15 4m8l:A (2.37) BS05 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    16 4m8l:A (2.37) BS06 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    17 4m8l:A (2.37) BS07 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    18 4m8l:B (2.37) BS02 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    19 4m8l:B (2.37) BS03 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    20 4m8l:B (2.37) BS04 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    21 4m8l:B (2.37) BS05 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    22 4m8l:B (2.37) BS06 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    23 4m8l:B (2.37) BS07 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    24 4m8l:C (2.37) BS02 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    25 4m8l:C (2.37) BS03 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    26 4m8l:C (2.37) BS04 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    27 4m8l:C (2.37) BS05 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    28 4m8l:C (2.37) BS06 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    29 4m8l:C (2.37) BS07 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    30 4m8l:C (2.37) BS08 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    31 4m8l:D (2.37) BS01 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    32 4m8l:D (2.37) BS03 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    33 4m8l:D (2.37) BS04 ARF 5.3.1.6 GO:0004751 ... A4IYN5 N/A
    34 4mhl:A (2.09) BS01 ARF ? GO:0005125 ... P20809 25195742
    35 4mhl:A (2.09) BS02 ARF ? GO:0005125 ... P20809 25195742
    36 4mhl:A (2.09) BS03 ARF ? GO:0005125 ... P20809 25195742
    37 4omx:A (2.3) BS03 ARF ? GO:0005576 ... P02756 25450833
    38 4omx:A (2.3) BS04 ARF ? GO:0005576 ... P02756 25450833
    39 4qt6:A (1.64) BS01 ARF 2.3.2.26 N/A Q15751 N/A
    40 4qt6:A (1.64) BS02 ARF 2.3.2.26 N/A Q15751 N/A
    41 4qt6:A (1.64) BS03 ARF 2.3.2.26 N/A Q15751 N/A
    42 4qt6:A (1.64) BS04 ARF 2.3.2.26 N/A Q15751 N/A
    43 4qt6:A (1.64) BS05 ARF 2.3.2.26 N/A Q15751 N/A
    44 4qt6:A (1.64) BS06 ARF 2.3.2.26 N/A Q15751 N/A
    45 4web:H (2.4) BS01 ARF N/A N/A N/A 24553139
    46 4web:L (2.4) BS01 ARF N/A N/A N/A 24553139
    47 7pca:A (1.05) BS01 ARF ? GO:0003674 ... P42212 35072524
    48 7uqw:B (1.5) BS02 ARF 3.4.15.6 GO:0006508 ... P73832 35905922
    49 7uqw:B (1.5) BS03 ARF 3.4.15.6 GO:0006508 ... P73832 35905922
    50 7uqw:B (1.5) BS04 ARF 3.4.15.6 GO:0006508 ... P73832 35905922
    51 7uqw:B (1.5) BS05 ARF 3.4.15.6 GO:0006508 ... P73832 35905922
    52 7uqw:C (1.5) BS01 ARF 3.4.15.6 GO:0006508 ... P73832 35905922
    53 7uqw:C (1.5) BS03 ARF 3.4.15.6 GO:0006508 ... P73832 35905922
    54 7uqw:C (1.5) BS04 ARF 3.4.15.6 GO:0006508 ... P73832 35905922
    55 8cm6:C (1.416) BS04 ARF 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    56 8cm6:C (1.416) BS05 ARF 1.2.1.2 GO:0005515 ... Q72EJ1 37985883
    57 8cm6:D (1.416) BS01 ARF ? GO:0046872 ... Q72EJ0 37985883
    58 8oql:A (2.7) BS01 ARF 1.1.1.35 GO:0000166 ... O53872 39012716
    59 8oql:B (2.7) BS01 ARF 1.1.1.35 GO:0000166 ... O53872 39012716
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218