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BioLiP
Download all results in tab-seperated text for 18 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1abe:A (1.7) BS02 ARB ? GO:0015407 ... P02924 6379466
    2 1bap:A (1.75) BS02 ARB ? GO:0015407 ... P02924 2204627 MOAD: Kd=0.14uM
    PDBbind: -logKd/Ki=6.85, Kd=0.14uM
    3 1mmz:A (1.8) BS01 ARB 5.1.3.3 GO:0003824 ... Q9ZB17 12218067
    4 1mmz:B (1.8) BS01 ARB 5.1.3.3 GO:0003824 ... Q9ZB17 12218067
    5 3tb6:A (2.21) BS01 ARB ? GO:0006355 ... P96711 22281747 PDBbind: -logKd/Ki=5.08, Kd=8.4uM
    6 3tb6:B (2.21) BS01 ARB ? GO:0006355 ... P96711 22281747
    7 4nzf:A (2.19) BS01 ARB N/A GO:0004553 ... N/A 25372689
    8 4nzf:B (2.19) BS01 ARB N/A GO:0004553 ... N/A 25372689
    9 4nzf:C (2.19) BS01 ARB N/A GO:0004553 ... N/A 25372689
    10 4nzf:D (2.19) BS01 ARB N/A GO:0004553 ... N/A 25372689
    11 4nzf:E (2.19) BS01 ARB N/A GO:0004553 ... N/A 25372689
    12 4nzf:F (2.19) BS01 ARB N/A GO:0004553 ... N/A 25372689
    13 4nzf:G (2.19) BS01 ARB N/A GO:0004553 ... N/A 25372689
    14 4nzf:H (2.19) BS01 ARB N/A GO:0004553 ... N/A 25372689
    15 4qdp:A (2.0) BS01 ARB 5.3.1.5 GO:0000287 ... P24300 25132082
    16 5la2:A (1.65) BS04 ARB ? GO:0000272 ... A3DHG6 27531750
    17 5la2:B (1.65) BS04 ARB ? GO:0000272 ... A3DHG6 27531750
    18 6abp:A (1.67) BS02 ARB ? GO:0015407 ... P02924 2069949 MOAD: Kd=0.44uM
    PDBbind: -logKd/Ki=6.36, Kd=0.44uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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