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BioLiP
Download all results in tab-seperated text for 66 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1c66:A (2.1) BS01 AR 3.2.1.17 GO:0003796 ... P00720 10993735
    2 5nvi:A (1.6) BS02 AR 1.7.-.- GO:0005092 ... Q9ER97 29108649
    3 6ia1:A (2.36) BS02 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    4 6ia3:A (1.69) BS02 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    5 6ia9:aaa (1.8) BS03 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    6 6ia9:aba (1.8) BS01 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    7 6q8r:A (1.7) BS01 AR 3.2.1.17 GO:0003796 ... P00698 N/A
    8 6q8r:A (1.7) BS02 AR 3.2.1.17 GO:0003796 ... P00698 N/A
    9 6q8r:A (1.7) BS03 AR 3.2.1.17 GO:0003796 ... P00698 N/A
    10 6qar:A (1.85) BS06 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    11 6qar:A (1.85) BS07 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    12 6qar:A (1.85) BS08 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    13 6qar:A (1.85) BS09 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    14 6qar:A (1.85) BS10 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    15 6qar:A (1.85) BS11 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    16 6qar:A (1.85) BS12 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    17 6qar:A (1.85) BS13 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    18 6qar:A (1.85) BS14 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    19 6qar:A (1.85) BS15 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    20 6qar:A (1.85) BS16 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    21 6qar:A (1.85) BS17 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    22 6qar:A (1.85) BS18 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    23 6qar:A (1.85) BS19 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    24 6qar:A (1.85) BS20 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    25 6qar:A (1.85) BS21 AR 3.4.24.27 GO:0004222 ... P00800 N/A
    26 6r1q:A (1.95) BS02 AR 1.7.-.- GO:0005092 ... Q9ER97 N/A
    27 6r1q:A (1.95) BS03 AR 1.7.-.- GO:0005092 ... Q9ER97 N/A
    28 6r1q:A (1.95) BS04 AR 1.7.-.- GO:0005092 ... Q9ER97 N/A
    29 6r1q:A (1.95) BS05 AR 1.7.-.- GO:0005092 ... Q9ER97 N/A
    30 6r1q:A (1.95) BS06 AR 1.7.-.- GO:0005092 ... Q9ER97 N/A
    31 6r1q:A (1.95) BS07 AR 1.7.-.- GO:0005092 ... Q9ER97 N/A
    32 6r1q:A (1.95) BS08 AR 1.7.-.- GO:0005092 ... Q9ER97 N/A
    33 6r1q:A (1.95) BS09 AR 1.7.-.- GO:0005092 ... Q9ER97 N/A
    34 6r1q:A (1.95) BS10 AR 1.7.-.- GO:0005092 ... Q9ER97 N/A
    35 6ra8:A (2.0) BS01 AR ? GO:0005506 ... P02791 N/A
    36 6zmc:C (2.5) BS03 AR ? GO:0006400 ... A0A179QS89 32785618
    37 7puf:A (1.86) BS02 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    38 7puf:B (1.86) BS02 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    39 7pwn:A (1.64) BS02 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    40 7pwn:B (1.64) BS02 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    41 7q09:A (2.19) BS02 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    42 7q09:B (2.19) BS02 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    43 7q38:A (1.65) BS02 AR ? GO:0005216 ... P02945 35422073
    44 7q38:A (1.65) BS03 AR ? GO:0005216 ... P02945 35422073
    45 7q38:A (1.65) BS04 AR ? GO:0005216 ... P02945 35422073
    46 7q38:A (1.65) BS05 AR ? GO:0005216 ... P02945 35422073
    47 7q38:A (1.65) BS06 AR ? GO:0005216 ... P02945 35422073
    48 7q38:A (1.65) BS07 AR ? GO:0005216 ... P02945 35422073
    49 7q38:A (1.65) BS08 AR ? GO:0005216 ... P02945 35422073
    50 7q38:A (1.65) BS09 AR ? GO:0005216 ... P02945 35422073
    51 7q38:A (1.65) BS10 AR ? GO:0005216 ... P02945 35422073
    52 7q38:A (1.65) BS11 AR ? GO:0005216 ... P02945 35422073
    53 7q38:A (1.65) BS12 AR ? GO:0005216 ... P02945 35422073
    54 7q38:A (1.65) BS13 AR ? GO:0005216 ... P02945 35422073
    55 7q38:A (1.65) BS14 AR ? GO:0005216 ... P02945 35422073
    56 7q38:A (1.65) BS15 AR ? GO:0005216 ... P02945 35422073
    57 7q38:A (1.65) BS16 AR ? GO:0005216 ... P02945 35422073
    58 7q38:A (1.65) BS17 AR ? GO:0005216 ... P02945 35422073
    59 7q38:A (1.65) BS18 AR ? GO:0005216 ... P02945 35422073
    60 7q38:A (1.65) BS19 AR ? GO:0005216 ... P02945 35422073
    61 7q38:A (1.65) BS20 AR ? GO:0005216 ... P02945 35422073
    62 7q38:A (1.65) BS21 AR ? GO:0005216 ... P02945 35422073
    63 7q38:A (1.65) BS22 AR ? GO:0005216 ... P02945 35422073
    64 7q38:A (1.65) BS23 AR ? GO:0005216 ... P02945 35422073
    65 7q38:A (1.65) BS24 AR ? GO:0005216 ... P02945 35422073
    66 7q38:A (1.65) BS25 AR ? GO:0005216 ... P02945 35422073
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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