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BioLiP
Download all results in tab-seperated text for 28 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3fbv:A (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    2 3fbv:B (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    3 3fbv:C (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    4 3fbv:D (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    5 3fbv:E (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    6 3fbv:F (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    7 3fbv:G (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    8 3fbv:H (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    9 3fbv:I (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    10 3fbv:J (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    11 3fbv:K (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    12 3fbv:L (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    13 3fbv:M (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    14 3fbv:N (3.2) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 19079236
    15 3sdj:A (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333
    16 3sdj:B (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333
    17 3sdj:C (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333
    18 3sdj:D (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333
    19 3sdj:E (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333
    20 3sdj:F (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333
    21 3sdj:G (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333
    22 3sdj:H (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333
    23 3sdj:I (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333
    24 3sdj:J (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333
    25 3sdj:K (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333
    26 3sdj:L (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333
    27 3sdj:M (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333
    28 3sdj:N (3.65) BS01 APJ 2.7.11.1
    3.1.26.-
    GO:0004521 ... P32361 21729333

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023)(download the PDF file).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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