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BioLiP
Download all results in tab-seperated text for 25 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1o2e:A (2.6) BS02 ANN 3.1.1.4 GO:0002227 ... P00593 14529623
    2 1sv3:A (1.35) BS01 ANN 3.1.1.4 GO:0004623 ... P59071 16596639 PDBbind: -logKd/Ki=4.35, Kd=45uM
    3 2b96:A (1.7) BS03 ANN 3.1.1.4 GO:0002227 ... P00593 16552140
    4 2que:A (2.25) BS02 ANN 3.1.1.4 GO:0004623 ... P59071 N/A
    5 3cbi:A (3.15) BS02 ANN 3.1.1.4 GO:0004623 ... P59071 N/A
    6 3cbi:B (3.15) BS02 ANN 3.1.1.4 GO:0004623 ... P59071 N/A
    7 3cbi:C (3.15) BS02 ANN 3.1.1.4 GO:0004623 ... P59071 N/A
    8 3cbi:D (3.15) BS02 ANN 3.1.1.4 GO:0004623 ... P59071 N/A
    9 3nju:A (1.4) BS01 ANN 3.1.1.4 GO:0004623 ... P60045 N/A
    10 4dnj:A (1.8) BS02 ANN 1.14.99.15 GO:0004497 ... Q6N8N2 22695988
    11 4do1:A (2.0) BS02 ANN ? GO:0004497 ... Q2IU02 22695988 MOAD: Kd=0.28uM
    12 4do1:B (2.0) BS02 ANN ? GO:0004497 ... Q2IU02 22695988 MOAD: Kd=0.28uM
    13 4do1:C (2.0) BS02 ANN ? GO:0004497 ... Q2IU02 22695988 MOAD: Kd=0.28uM
    14 4do1:D (2.0) BS02 ANN ? GO:0004497 ... Q2IU02 22695988 MOAD: Kd=0.28uM
    15 5kdy:A (1.589) BS02 ANN ? GO:0004497 ... Q2IU02 N/A
    16 5kdz:A (1.424) BS01 ANN ? GO:0004497 ... Q2IU02 N/A
    17 5oc1:A (2.3) BS01 ANN 1.1.3.7 GO:0000166 ... O94219 29043303
    18 5rvn:A (1.26) BS01 ANN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 N/A P0DTD1 33853786
    19 7n60:A (1.892) BS02 ANN 1.14.-.- GO:0004497 ... Q2IU02 N/A
    20 7reh:A (1.545) BS01 ANN 1.-.-.- GO:0004497 ... Q2IU02 N/A
    21 8gm1:A (1.85) BS02 ANN ? GO:0004497 ... Q2IU02 37971151
    22 8gm2:A (2.33) BS01 ANN ? GO:0004497 ... Q2IU02 37971151
    23 8hgc:A (1.72) BS02 ANN ? GO:0004497 ... Q2IU02 36790023
    24 8vf0:A (2.028) BS01 ANN N/A GO:0004497 ... Q2IU02 N/A
    25 8vf3:A (1.469) BS01 ANN N/A GO:0004497 ... Q2IU02 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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