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BioLiP
Download all results in tab-seperated text for 54 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 3ba6:A (2.8) BS04 AN2 7.2.2.10 GO:0000166 ... P04191 18075584
    2 3ied:A (2.01) BS01 AN2 ? GO:0005524 ... Q8IL32 N/A
    3 4bwp:A (3.6) BS01 AN2 ? GO:0000289 ... Q95RR8 23932717
    4 4bwp:B (3.6) BS01 AN2 ? GO:0000289 ... Q95RR8 23932717
    5 4u7o:A (2.395) BS01 AN2 2.7.13.3 GO:0000155 ... A0A0M3KKX3 28994408 PDBbind: -logKd/Ki=3.35, Kd=450uM
    6 4u7o:B (2.395) BS01 AN2 2.7.13.3 GO:0000155 ... A0A0M3KKX3 28994408
    7 4yhj:A (2.6) BS01 AN2 2.7.11.16 GO:0004672 ... P32298 26134571
    8 4yhj:B (2.6) BS01 AN2 2.7.11.16 GO:0004672 ... P32298 26134571
    9 5c3y:A (2.6) BS01 AN2 2.7.1.15 GO:0004747 ... Q9H477 N/A
    10 5c3y:B (2.6) BS01 AN2 2.7.1.15 GO:0004747 ... Q9H477 N/A
    11 5c3y:C (2.6) BS01 AN2 2.7.1.15 GO:0004747 ... Q9H477 N/A
    12 5c3y:D (2.6) BS01 AN2 2.7.1.15 GO:0004747 ... Q9H477 N/A
    13 5c3y:E (2.6) BS01 AN2 2.7.1.15 GO:0004747 ... Q9H477 N/A
    14 5c3y:F (2.6) BS01 AN2 2.7.1.15 GO:0004747 ... Q9H477 N/A
    15 5c3y:G (2.6) BS01 AN2 2.7.1.15 GO:0004747 ... Q9H477 N/A
    16 5c3y:H (2.6) BS01 AN2 2.7.1.15 GO:0004747 ... Q9H477 N/A
    17 5c3y:I (2.6) BS01 AN2 2.7.1.15 GO:0004747 ... Q9H477 N/A
    18 5c3y:J (2.6) BS01 AN2 2.7.1.15 GO:0004747 ... Q9H477 N/A
    19 5c3y:K (2.6) BS01 AN2 2.7.1.15 GO:0004747 ... Q9H477 N/A
    20 5c3y:L (2.6) BS01 AN2 2.7.1.15 GO:0004747 ... Q9H477 N/A
    21 5h9b:A (2.25) BS02 AN2 2.7.11.17 GO:0004672 ... Q00168 30381148
    22 5jzj:A (1.71) BS02 AN2 2.7.11.1 GO:0004672 ... O15075 27545623
    23 5jzj:B (1.71) BS02 AN2 2.7.11.1 GO:0004672 ... O15075 27545623
    24 5kq8:A (2.002) BS01 AN2 2.7.1.33 GO:0004594 ... Q9H999 27555321
    25 6fh2:A (2.7) BS01 AN2 2.7.14.1 GO:0003824 ... P0DMM5 30962626
    26 6gr3:A (1.88) BS01 AN2 3.6.4.10 GO:0005524 ... P07900 30248409
    27 7mp9:A (2.8) BS01 AN2 2.7.11.1 GO:0004672 ... D6WMX4 34875213
    28 7nqr:A (2.22) BS01 AN2 ? GO:0005524 ... K7NTP5 N/A
    29 7nqr:B (2.22) BS02 AN2 ? GO:0005524 ... K7NTP5 N/A
    30 7nqs:A (2.56) BS01 AN2 ? GO:0005524 ... K7NTP5 N/A
    31 7nqs:B (2.56) BS01 AN2 ? GO:0005524 ... K7NTP5 N/A
    32 7nqu:A (2.13) BS01 AN2 ? GO:0005524 ... K7NTP5 N/A
    33 7nqu:B (2.13) BS01 AN2 ? GO:0005524 ... K7NTP5 N/A
    34 7nqz:A (2.319) BS01 AN2 ? GO:0005524 ... K7NTP5 N/A
    35 7nqz:B (2.319) BS01 AN2 ? GO:0005524 ... K7NTP5 N/A
    36 7ooe:A (2.369) BS01 AN2 ? GO:0005524 ... K7NTP5 34341192
    37 7ooe:B (2.369) BS01 AN2 ? GO:0005524 ... K7NTP5 34341192
    38 7oog:A (2.42) BS01 AN2 ? GO:0005524 ... K7NTP5 34341192
    39 7oog:B (2.42) BS01 AN2 ? GO:0005524 ... K7NTP5 34341192
    40 7ooh:A () BS01 AN2 ? N/A N/A N/A
    41 7ooh:B () BS01 AN2 ? N/A N/A N/A
    42 7p31:A (2.36) BS01 AN2 ? GO:0005524 ... K7NTP5 34341192
    43 7p31:B (2.36) BS01 AN2 ? GO:0005524 ... K7NTP5 34341192
    44 7ueu:A (2.0) BS02 AN2 2.7.1.33 GO:0004594 ... Q9H999 N/A
    45 8idw:A (2.304) BS01 AN2 N/A N/A A0A7Z7PMX0 N/A
    46 8idw:B (2.304) BS01 AN2 N/A N/A A0A7Z7PMX0 N/A
    47 8idw:C (2.304) BS01 AN2 N/A N/A A0A7Z7PMX0 N/A
    48 8idw:D (2.304) BS01 AN2 N/A N/A A0A7Z7PMX0 N/A
    49 8pst:A (1.9) BS01 AN2 N/A GO:0000165 ... P28482 N/A
    50 8psw:A (2.0) BS01 AN2 N/A GO:0000165 ... P28482 N/A
    51 8psy:A (2.55) BS01 AN2 N/A GO:0000165 ... P28482 N/A
    52 8xj6:B (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    53 8xj6:E (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    54 8xj6:F (3.32) BS01 AN2 ? GO:0004386 ... A0A7H0DN89 38914567
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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