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BioLiP
Download all results in tab-seperated text for 61 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1m9n:A (1.93) BS01 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 12501179
    2 1m9n:A (1.93) BS03 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 12501179
    3 1m9n:B (1.93) BS01 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 12501179
    4 1m9n:B (1.93) BS02 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P31335 12501179
    5 1p4r:A (2.55) BS01 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129
    6 1p4r:A (2.55) BS04 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129
    7 1p4r:B (2.55) BS01 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129
    8 1p4r:B (2.55) BS03 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129
    9 1pl0:A (2.6) BS02 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129
    10 1pl0:B (2.6) BS01 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129
    11 1pl0:C (2.6) BS02 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129
    12 1pl0:C (2.6) BS03 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129
    13 1pl0:D (2.6) BS01 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129
    14 1pl0:D (2.6) BS02 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 14966129
    15 2cnq:A (1.0) BS02 AMZ 6.3.2.6 GO:0004639 ... P27616 N/A
    16 2cnq:A (1.0) BS03 AMZ 6.3.2.6 GO:0004639 ... P27616 N/A
    17 2ntl:A (2.6) BS01 AMZ 3.5.4.10 GO:0003937 ... O27099 17407260
    18 2ntl:B (2.6) BS01 AMZ 3.5.4.10 GO:0003937 ... O27099 17407260
    19 2ntl:C (2.6) BS01 AMZ 3.5.4.10 GO:0003937 ... O27099 17407260
    20 2ntl:D (2.6) BS01 AMZ 3.5.4.10 GO:0003937 ... O27099 17407260
    21 2qre:E (3.01) BS01 AMZ ? GO:0005515 ... Q10343 17937917
    22 2qre:G (3.01) BS01 AMZ ? GO:0005515 ... Q10343 17937917
    23 2r7k:A (2.1) BS02 AMZ 6.3.4.23 GO:0000287 ... Q57600 18069798
    24 2r7l:A (2.1) BS02 AMZ 6.3.4.23 GO:0000287 ... Q57600 18069798
    25 2r84:A (1.9) BS02 AMZ 6.3.4.23 GO:0000287 ... Q8U0R7 18069798
    26 2r84:B (1.9) BS02 AMZ 6.3.4.23 GO:0000287 ... Q8U0R7 18069798
    27 2uv5:A (1.69) BS01 AMZ ? N/A P54619 17452784
    28 4a1o:A (2.48) BS01 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P9WHM7 21956117
    29 4a1o:A (2.48) BS04 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P9WHM7 21956117
    30 4a1o:B (2.48) BS01 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P9WHM7 21956117
    31 4a1o:B (2.48) BS03 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003824 ... P9WHM7 21956117
    32 4tx9:A (1.6) BS01 AMZ 5.3.1.16
    5.3.1.24    		 GO:0000105 ... B5I4P8 26929404
    33 5dn1:A (1.953) BS01 AMZ 5.3.1.16
    5.3.1.24    		 GO:0000105 ... P16250 26929404
    34 5nxa:B (2.4) BS04 AMZ 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    35 5nxa:C (2.4) BS03 AMZ 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    36 5nxa:E (2.4) BS04 AMZ 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    37 5nxa:H (2.4) BS04 AMZ 4.3.2.2 GO:0000166 ... A0A384E0N4 30573755
    38 5pzw:A (2.0) BS02 AMZ 3.1.3.11 GO:0000122 ... P09467 N/A
    39 5pzw:B (2.0) BS02 AMZ 3.1.3.11 GO:0000122 ... P09467 N/A
    40 5uy8:A (2.39) BS02 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    41 5uy8:A (2.39) BS03 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    42 5uy8:A (2.39) BS06 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    43 5uy8:B (2.39) BS02 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    44 5uy8:B (2.39) BS04 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    45 5uy8:C (2.39) BS02 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    46 5uy8:C (2.39) BS03 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    47 5uy8:C (2.39) BS06 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    48 5uy8:D (2.39) BS02 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    49 5uy8:D (2.39) BS04 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    50 5uy8:D (2.39) BS05 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    51 5uz0:A (1.79) BS01 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    52 5uz0:A (1.79) BS02 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    53 5uz0:A (1.79) BS06 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    54 5uz0:B (1.79) BS01 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    55 5uz0:B (1.79) BS04 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    56 5uz0:C (1.79) BS01 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    57 5uz0:C (1.79) BS02 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    58 5uz0:C (1.79) BS06 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    59 5uz0:D (1.79) BS01 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    60 5uz0:D (1.79) BS04 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    61 5uz0:D (1.79) BS05 AMZ 2.1.2.3
    3.5.4.10    		 GO:0003360 ... P31939 29072452
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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