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BioLiP
Download all results in tab-seperated text for 37 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1d0k:A (2.02) BS01 AMU 4.2.2.n1 GO:0005509 ... P41052 10684641
    2 1d0k:A (2.02) BS02 AMU 4.2.2.n1 GO:0005509 ... P41052 10684641
    3 2j8g:A (1.69) BS01 AMU 3.2.1.17 GO:0003796 ... P15057 17581815
    4 2mtz:A (-1.00) BS03 AMU 2.-.-.- GO:0008360 ... O34816 25429710
    5 2mtz:A (-1.00) BS04 AMU 2.-.-.- GO:0008360 ... O34816 25429710
    6 3cyq:D (2.3) BS01 AMU ? N/A P56427 N/A
    7 3cyq:K (2.3) BS01 AMU ? N/A P56427 N/A
    8 4bpa:B (2.7) BS02 AMU 3.5.1.28 GO:0008745 ... Q9HT86 23819763
    9 4cfp:A (2.15) BS02 AMU 4.2.2.n1 GO:0008932 ... P0C066 24988330
    10 4cfp:B (2.15) BS02 AMU 4.2.2.n1 GO:0008932 ... P0C066 24988330
    11 4h0z:A (2.0) BS01 AMU 3.2.2.22 GO:0000166 ... D9J2T9 N/A
    12 4hjv:A (2.3) BS01 AMU 4.2.2.n2 GO:0000270 ... P0C960 23075328
    13 4hjv:C (2.3) BS01 AMU 4.2.2.n2 GO:0000270 ... P0C960 23075328
    14 4hjv:D (2.3) BS01 AMU 4.2.2.n2 GO:0000270 ... P0C960 23075328
    15 4pi7:A (1.6) BS01 AMU ? GO:0004040 ... A0A0H3JT72 N/A
    16 4pi8:A (1.39) BS01 AMU ? GO:0004040 ... A0A0H3JT72 N/A
    17 5e0b:C (2.6) BS01 AMU ? GO:0001818 ... Q9GK12 N/A
    18 6fcr:A (2.75) BS03 AMU 4.2.2.- GO:0004553 ... Q9HZI6 29632171
    19 6fcs:A (2.9) BS02 AMU 4.2.2.- GO:0004553 ... Q9HZI6 29632171
    20 6fcu:A (3.2) BS01 AMU 4.2.2.- GO:0004553 ... Q9HZI6 29632171
    21 6i09:A (1.48) BS02 AMU 4.2.2.- GO:0042834 ... Q9X6V6 31804467
    22 6i0a:A (1.3) BS01 AMU 4.2.2.- GO:0042834 ... Q9X6V6 31804467
    23 6i0n:A (1.4) BS01 AMU 4.2.2.- GO:0042834 ... Q9X6V6 31804467
    24 7pj6:AAA (1.3) BS01 AMU 3.2.1.96 GO:0004040 ... P59206 37418323
    25 7pj6:AAA (1.3) BS02 AMU 3.2.1.96 GO:0004040 ... P59206 37418323
    26 7pod:A (1.5) BS02 AMU 3.2.1.96 GO:0004040 ... P59206 37418323
    27 8ow7:A (3.06) BS01 AMU ? N/A G8UQH1 37481208
    28 8ow7:B (3.06) BS01 AMU ? N/A G8UQH1 37481208
    29 8ow7:C (3.06) BS01 AMU ? N/A G8UQH1 37481208
    30 8ow7:D (3.06) BS01 AMU ? N/A G8UQH1 37481208
    31 8ow7:E (3.06) BS01 AMU ? N/A G8UQH1 37481208
    32 8ow7:F (3.06) BS01 AMU ? N/A G8UQH1 37481208
    33 8ow9:A (2.7) BS01 AMU ? N/A G8UQH9 37481208
    34 8ow9:B (2.7) BS01 AMU ? N/A G8UQH9 37481208
    35 8ow9:D (2.7) BS01 AMU ? N/A G8UQH9 37481208
    36 8ow9:E (2.7) BS01 AMU ? N/A G8UQH9 37481208
    37 9lyz:A (2.5) BS01 AMU 3.2.1.17 GO:0003796 ... P00698 514367
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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