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BioLiP
Download all results in tab-seperated text for 2023 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 3ifc:A (1.97) BS01 AMP 3.1.3.11 GO:0005515 ... O00757 22120740
    602 3ifc:B (1.97) BS01 AMP 3.1.3.11 GO:0005515 ... O00757 22120740
    603 3ifc:C (1.97) BS01 AMP 3.1.3.11 GO:0005515 ... O00757 22120740
    604 3ifc:D (1.97) BS01 AMP 3.1.3.11 GO:0005515 ... O00757 22120740
    605 3iuy:A (2.4) BS01 AMP 3.6.4.13 GO:0003676 ... Q86TM3 20941364
    606 3iuy:B (2.4) BS01 AMP 3.6.4.13 GO:0003676 ... Q86TM3 20941364
    607 3jtf:A (2.0) BS01 AMP ? N/A Q7WB69 N/A
    608 3jtf:B (2.0) BS01 AMP ? N/A Q7WB69 N/A
    609 3jwp:A (2.65) BS01 AMP 2.3.1.- GO:0000781 ... Q8IE47 N/A
    610 3kd6:A (1.88) BS01 AMP ? GO:0000166 ... Q8KDR9 N/A
    611 3kd6:B (1.88) BS01 AMP ? GO:0000166 ... Q8KDR9 N/A
    612 3kgd:A (1.68) BS01 AMP 6.5.1.4 GO:0003824 ... P46849 20399182
    613 3kgd:B (1.68) BS01 AMP 6.5.1.4 GO:0003824 ... P46849 20399182
    614 3kgd:C (1.68) BS01 AMP 6.5.1.4 GO:0003824 ... P46849 20399182
    615 3kgd:D (1.68) BS01 AMP 6.5.1.4 GO:0003824 ... P46849 20399182
    616 3kh5:A (2.1) BS02 AMP 1.1.1.34 N/A Q58622 20382158
    617 3kh5:A (2.1) BS05 AMP 1.1.1.34 N/A Q58622 20382158
    618 3l2p:A (3.0) BS04 AMP 6.5.1.1 GO:0003677 ... P49916 20518483
    619 3l31:A (2.3) BS01 AMP 3.6.1.1 N/A Q8XIQ9 20303981
    620 3l31:B (2.3) BS01 AMP 3.6.1.1 N/A Q8XIQ9 20303981
    621 3l4b:A (3.45) BS01 AMP ? GO:0000166 ... D3KFX7 N/A
    622 3l4b:B (3.45) BS01 AMP ? GO:0000166 ... D3KFX7 N/A
    623 3l4b:E (3.45) BS01 AMP ? GO:0000166 ... D3KFX7 N/A
    624 3l4b:F (3.45) BS01 AMP ? GO:0000166 ... D3KFX7 N/A
    625 3l9w:A (1.75) BS02 AMP ?
    1.6.5.2
    GO:0003955 ... P03819
    P0A754
    21041667
    626 3l9w:B (1.75) BS02 AMP ?
    1.6.5.2
    GO:0003955 ... P03819
    P0A754
    21041667
    627 3lc6:B (3.1) BS01 AMP 2.7.11.5
    3.1.3.-
    GO:0004674 ... Q8X607 20505668
    628 3lcb:A (2.9) BS01 AMP 2.7.11.5
    3.1.3.-
    GO:0004674 ... Q8X607 20505668
    629 3lcb:B (2.9) BS02 AMP 2.7.11.5
    3.1.3.-
    GO:0004674 ... Q8X607 20505668
    630 3lfr:A (1.53) BS01 AMP ? N/A Q87VX8 N/A
    631 3lfr:B (1.53) BS01 AMP ? N/A Q87VX8 N/A
    632 3lfz:A (2.2) BS04 AMP ? N/A Q58622 20382158
    633 3lhh:A (2.1) BS01 AMP ? N/A Q8EDE1 N/A
    634 3lkm:A (1.6) BS06 AMP 2.7.11.7 GO:0004674 ... P42527 20197546
    635 3loq:A (2.32) BS01 AMP ? GO:0000166 ... O28514 N/A
    636 3loq:B (2.32) BS01 AMP ? GO:0000166 ... O28514 N/A
    637 3loq:B (2.32) BS02 AMP ? GO:0000166 ... O28514 N/A
    638 3lq3:A (1.42) BS04 AMP 2.7.1.32
    2.7.1.82
    GO:0004103 ... Q9Y259 20299452
    639 3lud:A (2.095) BS01 AMP 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=0.26mM
    640 3lud:B (2.095) BS01 AMP 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=0.26mM
    641 3lud:C (2.095) BS01 AMP 3.1.26.n2 GO:0003676 ... Q9UKV8 20505670 MOAD: Kd=0.26mM
    642 3lw7:B (2.3) BS01 AMP ? GO:0005524 ... Q97Z90 N/A
    643 3m84:A (1.699) BS01 AMP 6.3.3.1 GO:0004637 ... Q5NGF2 N/A
    644 3mf2:A (2.15) BS02 AMP 6.2.1.n2 GO:0000166 ... Q89VT8 20663952
    645 3mf2:B (2.15) BS02 AMP 6.2.1.n2 GO:0000166 ... Q89VT8 20663952
    646 3n8h:A (2.001) BS02 AMP 6.3.2.1 GO:0003824 ... Q5NF57 N/A
    647 3n8h:B (2.001) BS02 AMP 6.3.2.1 GO:0003824 ... Q5NF57 N/A
    648 3ngn:A (2.4) BS01 AMP 3.1.13.4 GO:0003824 ... Q96LI5 20628353
    649 3ngn:A (2.4) BS02 AMP 3.1.13.4 GO:0003824 ... Q96LI5 20628353
    650 3ngt:A (2.57) BS01 AMP 2.7.4.6 GO:0004550 ... Q9U1E1 21528129
    651 3ngt:B (2.57) BS01 AMP 2.7.4.6 GO:0004550 ... Q9U1E1 21528129
    652 3ngt:C (2.57) BS01 AMP 2.7.4.6 GO:0004550 ... Q9U1E1 21528129
    653 3ngt:D (2.57) BS01 AMP 2.7.4.6 GO:0004550 ... Q9U1E1 21528129
    654 3ngt:E (2.57) BS01 AMP 2.7.4.6 GO:0004550 ... Q9U1E1 21528129
    655 3ngt:F (2.57) BS01 AMP 2.7.4.6 GO:0004550 ... Q9U1E1 21528129
    656 3ngt:G (2.57) BS01 AMP 2.7.4.6 GO:0004550 ... Q9U1E1 21528129
    657 3ngt:H (2.57) BS01 AMP 2.7.4.6 GO:0004550 ... Q9U1E1 21528129
    658 3ngt:I (2.57) BS01 AMP 2.7.4.6 GO:0004550 ... Q9U1E1 21528129
    659 3ngt:J (2.57) BS01 AMP 2.7.4.6 GO:0004550 ... Q9U1E1 21528129
    660 3ngt:K (2.57) BS01 AMP 2.7.4.6 GO:0004550 ... Q9U1E1 21528129
    661 3ngt:M (2.57) BS01 AMP 2.7.4.6 GO:0004550 ... Q9U1E1 21528129
    662 3ngt:N (2.57) BS01 AMP 2.7.4.6 GO:0004550 ... Q9U1E1 21528129
    663 3nkv:A (1.7) BS03 AMP 3.6.5.2 GO:0003924 ... Q9H0U4 20651120
    664 3nkv:B (1.7) BS03 AMP 3.6.5.2 GO:0003924 ... Q9H0U4 20651120
    665 3nqr:A (2.0) BS01 AMP ? N/A P0A2L3 N/A
    666 3nqr:B (2.0) BS01 AMP ? N/A P0A2L3 N/A
    667 3nqr:C (2.0) BS01 AMP ? N/A P0A2L3 N/A
    668 3nqr:D (2.0) BS01 AMP ? N/A P0A2L3 N/A
    669 3nrn:A (2.1) BS01 AMP ? GO:0000166 ... Q8U1X1 N/A
    670 3nua:A (1.4) BS02 AMP 6.3.2.6 GO:0004639 ... Q0TTB4 N/A
    671 3nyo:A (2.92) BS01 AMP 2.7.11.16 GO:0004672 ... P43250 20729810
    672 3nyo:B (2.92) BS01 AMP 2.7.11.16 GO:0004672 ... P43250 20729810
    673 3nyq:A (1.43) BS02 AMP ? GO:0000166 ... Q9L0A2 21338915
    674 3nyr:A (1.45) BS02 AMP ? GO:0000166 ... Q9L0A2 21338915
    675 3nzt:A (2.0) BS01 AMP 6.3.2.2 GO:0003824 ... Q5NHS8 N/A
    676 3o0f:A (1.94) BS01 AMP ? GO:0000166 ... A1A2L3 21538547
    677 3o0m:A (1.9) BS02 AMP ? GO:0000166 ... A0R291 25613812
    678 3o0m:B (1.9) BS02 AMP ? GO:0000166 ... A0R291 25613812
    679 3ocv:A (1.551) BS01 AMP 3.1.3.2 GO:0009279 ... P26093 20934434
    680 3omf:A (1.8) BS02 AMP 3.9.1.- GO:0000166 ... C4LYI2 25945711
    681 3p4e:A (1.77) BS01 AMP 6.3.3.1 GO:0004637 ... Q9KPY6 N/A
    682 3pco:A (3.02) BS02 AMP 6.1.1.20 GO:0000049 ... P08312 21082706
    683 3pco:C (3.02) BS02 AMP 6.1.1.20 GO:0000049 ... P08312 21082706
    684 3py5:A (1.7) BS03 AMP ? GO:0000166 ... Q2YQ74 21904058
    685 3q10:A (1.83) BS01 AMP 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    686 3q10:B (1.83) BS01 AMP 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    687 3q10:C (1.83) BS01 AMP 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    688 3q10:D (1.83) BS01 AMP 6.3.2.1 GO:0004592 ... Q8ZBK7 N/A
    689 3qfo:A (2.2) BS01 AMP ? GO:0000166 ... Q8DNX4 N/A
    690 3qfo:B (2.2) BS01 AMP ? GO:0000166 ... Q8DNX4 N/A
    691 3qh8:A (1.6) BS03 AMP ? GO:0000166 ... Q2YQ74 21904058
    692 3r96:A (1.3) BS02 AMP ? GO:0016747 ... Q47510 21507941 MOAD: Kd=1.03mM
    693 3r96:B (1.3) BS02 AMP ? GO:0016747 ... Q47510 21507941 MOAD: Kd=1.03mM
    694 3rex:A (1.8) BS01 AMP ? GO:0000166 ... Q9V228 21820443
    695 3rex:B (1.8) BS01 AMP ? GO:0000166 ... Q9V228 21820443
    696 3rk0:A (2.4) BS01 AMP ? GO:0005524 ... Q8U2K6 22102225
    697 3rl6:A (2.0) BS02 AMP ? GO:0000166 ... Q9V228 21820443
    698 3rl6:B (2.0) BS02 AMP ? GO:0000166 ... Q9V228 21820443
    699 3roj:A (2.3) BS03 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    700 3roj:A (2.3) BS04 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    701 3roj:B (2.3) BS01 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    702 3roj:B (2.3) BS02 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    703 3roj:C (2.3) BS03 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    704 3roj:C (2.3) BS04 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    705 3roj:D (2.3) BS01 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    706 3roj:D (2.3) BS02 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    707 3rph:A (1.75) BS01 AMP 4.2.1.136 GO:0005524 ... P94368 22940582
    708 3rph:A (1.75) BS02 AMP 4.2.1.136 GO:0005524 ... P94368 22940582
    709 3rpl:A (2.4) BS04 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    710 3rpl:A (2.4) BS05 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    711 3rpl:B (2.4) BS01 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    712 3rpl:B (2.4) BS02 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    713 3rpl:C (2.4) BS04 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    714 3rpl:C (2.4) BS05 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    715 3rpl:D (2.4) BS01 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    716 3rpl:D (2.4) BS02 AMP 3.1.3.11
    3.1.3.37
    GO:0006071 ... P73922 N/A
    717 3rpz:A (1.51) BS01 AMP 4.2.1.136 GO:0005524 ... P94368 22940582
    718 3rq2:A (1.8) BS01 AMP 4.2.1.136 GO:0005524 ... P94368 22940582
    719 3rrb:A (2.4) BS02 AMP 4.2.1.136
    5.1.99.6
    GO:0005524 ... Q9X024 22940582
    720 3rrb:A (2.4) BS03 AMP 4.2.1.136
    5.1.99.6
    GO:0005524 ... Q9X024 22940582
    721 3sbx:A (2.5) BS01 AMP 3.2.2.n1 GO:0000166 ... B2HS63 25613812
    722 3sbx:B (2.5) BS01 AMP 3.2.2.n1 GO:0000166 ... B2HS63 25613812
    723 3sbx:C (2.5) BS01 AMP 3.2.2.n1 GO:0000166 ... B2HS63 25613812
    724 3sbx:D (2.5) BS01 AMP 3.2.2.n1 GO:0000166 ... B2HS63 25613812
    725 3sbx:E (2.5) BS01 AMP 3.2.2.n1 GO:0000166 ... B2HS63 25613812
    726 3sbx:F (2.5) BS01 AMP 3.2.2.n1 GO:0000166 ... B2HS63 25613812
    727 3sbx:F (2.5) BS02 AMP 3.2.2.n1 GO:0000166 ... B2HS63 25613812
    728 3sbx:G (2.5) BS01 AMP 3.2.2.n1 GO:0000166 ... B2HS63 25613812
    729 3sbx:H (2.5) BS01 AMP 3.2.2.n1 GO:0000166 ... B2HS63 25613812
    730 3sf0:A (1.35) BS02 AMP 3.1.3.2 GO:0009279 ... P26093 21933344
    731 3sgi:A (3.5) BS01 AMP 6.5.1.2 GO:0003911 ... P9WNV1 N/A
    732 3sp1:A (2.55) BS02 AMP 6.1.1.16 GO:0000166 ... O51545 28303005
    733 3sp1:B (2.55) BS02 AMP 6.1.1.16 GO:0000166 ... O51545 28303005
    734 3spl:A (2.101) BS04 AMP 3.6.1.71
    3.6.1.72
    GO:0003824 ... O74859 21984208
    735 3spl:B (2.101) BS04 AMP 3.6.1.71
    3.6.1.72
    GO:0003824 ... O74859 21984208
    736 3spl:C (2.101) BS04 AMP 3.6.1.71
    3.6.1.72
    GO:0003824 ... O74859 21984208
    737 3spl:D (2.101) BS04 AMP 3.6.1.71
    3.6.1.72
    GO:0003824 ... O74859 21984208
    738 3sr0:A (1.565) BS02 AMP 2.7.4.3 GO:0004017 ... O66490 25580578
    739 3sr0:B (1.565) BS02 AMP 2.7.4.3 GO:0004017 ... O66490 25580578
    740 3syt:A (2.6511) BS03 AMP 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    741 3syt:B (2.6511) BS03 AMP 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    742 3syt:C (2.6511) BS04 AMP 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    743 3syt:D (2.6511) BS04 AMP 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    744 3szg:A (2.25) BS02 AMP 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    745 3szg:B (2.25) BS02 AMP 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    746 3szg:C (2.25) BS03 AMP 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    747 3szg:D (2.25) BS03 AMP 6.3.5.1 GO:0003952 ... P9WJJ3 22280445
    748 3szq:A (2.353) BS03 AMP 3.6.1.71
    3.6.1.72
    GO:0003824 ... O74859 21984210
    749 3t5m:A (1.749) BS01 AMP ? GO:0000166 ... A0A6L8PEJ7 22516613
    750 3t5m:B (1.749) BS01 AMP ? GO:0000166 ... A0A6L8PEJ7 22516613
    751 3tdh:C (2.3) BS01 AMP ? GO:0004679 ... P12904 22019086 MOAD: Kd=55uM
    PDBbind: -logKd/Ki=4.26, Kd=55uM
    752 3tj7:A (2.1) BS01 AMP ? GO:0000166 ... A0A6L8P3N5 N/A
    753 3tj7:B (2.1) BS01 AMP ? GO:0000166 ... A0A6L8P3N5 N/A
    754 3tj7:C (2.1) BS01 AMP ? GO:0000166 ... A0A6L8P3N5 N/A
    755 3tj7:D (2.1) BS01 AMP ? GO:0000166 ... A0A6L8P3N5 N/A
    756 3tlx:A (2.75) BS03 AMP 2.7.4.3 GO:0004017 ... Q8IJV6 N/A
    757 3tlz:A (1.5) BS01 AMP ? GO:0016787 ... Q47511 22388748
    758 3tlz:B (1.5) BS01 AMP ? GO:0016787 ... Q47511 22388748
    759 3tnj:A (2.0) BS01 AMP ? GO:0000166 ... Q82VN8 23745136
    760 3ttf:A (1.92) BS04 AMP 3.6.1.7
    6.2.-.-
    GO:0003725 ... A0A0H3JHT3 22153500
    761 3tv1:A (1.9) BS01 AMP 6.5.1.4 GO:0003824 ... P46849 22167800
    762 3tv1:B (1.9) BS01 AMP 6.5.1.4 GO:0003824 ... P46849 22167800
    763 3tw2:A (1.38) BS01 AMP 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 22869114
    764 3ty9:A (3.12) BS01 AMP 6.5.1.3 N/A A3DJ38 22308407
    765 3ty9:B (3.12) BS01 AMP 6.5.1.3 N/A A3DJ38 22308407
    766 3ty9:C (3.12) BS01 AMP 6.5.1.3 N/A A3DJ38 22308407
    767 3ty9:D (3.12) BS01 AMP 6.5.1.3 N/A A3DJ38 22308407
    768 3tyx:A (2.04) BS01 AMP ? GO:0000166 ... A0A6L8PEJ7 22516613
    769 3tyx:B (2.04) BS01 AMP ? GO:0000166 ... A0A6L8PEJ7 22516613
    770 3u1b:A (1.604) BS01 AMP ? GO:0000166 ... A0A6L8PEJ7 22516613
    771 3u1b:B (1.604) BS01 AMP ? GO:0000166 ... A0A6L8PEJ7 22516613
    772 3uk2:A (2.25) BS01 AMP 6.3.2.1 GO:0003824 ... Q2T095 23382856
    773 3uk2:B (2.25) BS01 AMP 6.3.2.1 GO:0003824 ... Q2T095 23382856
    774 3uq6:A (2.3) BS02 AMP N/A GO:0004001 ... N/A 23275171
    775 3uq6:B (2.3) BS02 AMP N/A GO:0004001 ... N/A 23275171
    776 3uq8:A (1.7) BS02 AMP 6.5.1.2 GO:0003911 ... P43813 22230472
    777 3uy4:A (1.851) BS01 AMP 6.3.2.1 GO:0004592 ... Q9PIK2 N/A
    778 3vbf:A (2.6) BS01 AMP 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    N/A B2ZUN0 22388738
    779 3vgj:A (2.212) BS02 AMP 6.1.1.1 GO:0000166 ... Q8IAR7 22068597
    780 3vgj:B (2.212) BS02 AMP 6.1.1.1 GO:0000166 ... Q8IAR7 22068597
    781 3vnr:A (1.75) BS01 AMP N/A N/A N/A N/A
    782 3vns:A (2.001) BS01 AMP N/A N/A N/A N/A
    783 3vqx:A (2.3) BS01 AMP 6.1.1.26 GO:0000049 ... Q8PWY1 23275158
    784 3vqx:B (2.3) BS01 AMP 6.1.1.26 GO:0000049 ... Q8PWY1 23275158
    785 3w1b:A (2.4) BS02 AMP 6.5.1.1 GO:0003677 ... P49917 23523427
    786 3wjr:A (1.864) BS01 AMP ? GO:0005515 ... Q5JII7 24297906
    787 3wuh:A (2.937) BS02 AMP 2.3.1.234 GO:0000049 ... P43122 25084372
    788 3wuh:B (2.937) BS02 AMP 2.3.1.234 GO:0000049 ... P43122 25084372
    789 3wvr:B (2.175) BS01 AMP ? GO:0005524 ... A0A0A6YVN3 25402768
    790 3wvr:C (2.175) BS01 AMP ? GO:0005524 ... A0A0A6YVN3 25402768
    791 3wvr:D (2.175) BS01 AMP ? GO:0005524 ... A0A0A6YVN3 25402768
    792 3x01:A (2.15) BS01 AMP 2.7.1.149 GO:0005515 ... P78356 26774281
    793 3x01:A (2.15) BS02 AMP 2.7.1.149 GO:0005515 ... P78356 26774281
    794 3x01:A (2.15) BS03 AMP 2.7.1.149 GO:0005515 ... P78356 26774281
    795 3x01:B (2.15) BS01 AMP 2.7.1.149 GO:0005515 ... P78356 26774281
    796 3x05:A (2.5) BS01 AMP 2.7.1.149 GO:0005515 ... P78356 26774281
    797 3x05:A (2.5) BS02 AMP 2.7.1.149 GO:0005515 ... P78356 26774281
    798 3x05:B (2.5) BS01 AMP 2.7.1.149 GO:0005515 ... P78356 26774281
    799 3x05:B (2.5) BS02 AMP 2.7.1.149 GO:0005515 ... P78356 26774281
    800 3x07:A (2.6) BS01 AMP 2.7.1.149 GO:0005515 ... P78356 26774281

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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