Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2023 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 1 2 3 4 5 6 7 8 9 10 11 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    2001 8zoz:D (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    2002 9asi:A (2.79) BS06 AMP N/A N/A L0CEJ3 38989619
    2003 9b20:A (1.55) BS01 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    2004 9b20:A (1.55) BS03 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    2005 9b20:B (1.55) BS01 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    2006 9b20:B (1.55) BS02 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    2007 9b22:A (1.3) BS05 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    2008 9b22:B (1.3) BS05 AMP 3.6.1.13 GO:0000166 ... A0A0H3GVQ7 N/A
    2009 9b5h:A (2.69) BS02 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    2010 9b5i:A (2.7) BS02 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    2011 9b5j:A (2.86) BS01 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    2012 9b5l:A (3.3) BS01 AMP 6.2.1.45 GO:0000287 ... O94609 39143218
    2013 9bs3:A (2.69) BS04 AMP N/A N/A P18858 39159820
    2014 9bs3:E (2.69) BS04 AMP N/A N/A P18858 39159820
    2015 9bs4:A (2.4) BS04 AMP N/A N/A P18858 39159820
    2016 9bs4:E (2.4) BS04 AMP N/A N/A P18858 39159820
    2017 9d8s:A (2.12) BS01 AMP N/A N/A A3FQ16 N/A
    2018 9emb:A (2.98) BS01 AMP ? GO:0000166 ... P03819 N/A
    2019 9emb:B (2.98) BS01 AMP ? GO:0000166 ... P03819 N/A
    2020 9ij6:A (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    2021 9ij6:B (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    2022 9ij6:C (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    2023 9ij6:D (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218