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BioLiP
Download all results in tab-seperated text for 2023 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 7qep:L9 (2.7) BS02 AMP ? GO:0002181 ... Q8SSF7 N/A
    1802 7qep:N0 (2.7) BS03 AMP ? GO:0003735 ... Q8SRD7 N/A
    1803 7qnz:A (4.58) BS04 AMP 6.5.1.1 GO:0003677 ... P18858 36539424
    1804 7qo1:A (4.4) BS04 AMP 6.5.1.1 GO:0003677 ... P18858 36539424
    1805 7qps:A (2.79) BS01 AMP 2.7.6.5 GO:0015969 ... V5V8V7 N/A
    1806 7qps:B (2.79) BS01 AMP 2.7.6.5 GO:0015969 ... V5V8V7 N/A
    1807 7r27:A (2.01) BS02 AMP N/A GO:0005524 ... N/A 35907949
    1808 7r27:B (2.01) BS02 AMP N/A GO:0005524 ... N/A 35907949
    1809 7r7e:A (1.99) BS01 AMP 6.2.1.20 GO:0008610 ... B1XKC6 N/A
    1810 7r7e:B (1.99) BS01 AMP 6.2.1.20 GO:0008610 ... B1XKC6 N/A
    1811 7rpo:E (4.16) BS05 AMP 6.5.1.1 GO:0003677 ... Q980T8 34838188
    1812 7rpw:E (4.38) BS05 AMP 6.5.1.1 GO:0003677 ... Q980T8 34838188
    1813 7snb:A (1.11) BS01 AMP ? GO:0004371 ... Q2FZ58 N/A
    1814 7sol:A (2.25001) BS02 AMP 6.2.1.45 GO:0004792 ... A0AVT1 35986001
    1815 7sol:C (2.25001) BS01 AMP 6.2.1.45 GO:0004792 ... A0AVT1 35986001
    1816 7sum:A (2.9) BS04 AMP 6.5.1.1 GO:0003677 ... P18858 35790757
    1817 7sx5:A (2.8) BS04 AMP 6.5.1.1 GO:0003677 ... P18858 35790757
    1818 7sxe:A (3.0) BS04 AMP 6.5.1.1 GO:0003677 ... P18858 35790757
    1819 7t29:A (1.5) BS01 AMP 4.3.2.2 GO:0003824 ... Q9I0K9 N/A
    1820 7tgl:A (2.89) BS01 AMP N/A GO:0019290 ... N/A 35750210
    1821 7tgl:B (2.89) BS01 AMP N/A GO:0019290 ... N/A 35750210
    1822 7tgl:C (2.89) BS01 AMP N/A GO:0019290 ... N/A 35750210
    1823 7tgl:D (2.89) BS01 AMP N/A GO:0019290 ... N/A 35750210
    1824 7tgl:E (2.89) BS01 AMP N/A GO:0019290 ... N/A 35750210
    1825 7to3:A (2.74) BS01 AMP N/A GO:0008641 ... N/A 36755092
    1826 7to3:B (2.74) BS01 AMP N/A GO:0008641 ... N/A 36755092
    1827 7tqd:A (2.9) BS01 AMP N/A GO:0008641 ... N/A 36755092
    1828 7tsq:A (2.11) BS02 AMP N/A GO:0008641 ... N/A 36755092
    1829 7tsq:B (2.11) BS02 AMP N/A GO:0008641 ... N/A 36755092
    1830 7u56:A (1.85) BS01 AMP 6.3.2.4 GO:0003824 ... A0A0H3GSI5 N/A
    1831 7u56:B (1.85) BS01 AMP 6.3.2.4 GO:0003824 ... A0A0H3GSI5 N/A
    1832 7uq1:A (1.72) BS01 AMP ? GO:0004371 ... Q2FZ58 35490779
    1833 7vka:A (2.401) BS01 AMP 6.3.2.- GO:0005737 ... Q9LSQ4 36454752
    1834 7vka:B (2.401) BS01 AMP 6.3.2.- GO:0005737 ... Q9LSQ4 36454752
    1835 7vyp:A (2.88) BS04 AMP ? GO:0003824 ... Q84G19 36329057
    1836 7vzy:A (2.81) BS03 AMP ? GO:0003824 ... Q84G19 36329057
    1837 7vzy:B (2.81) BS04 AMP ? GO:0003824 ... Q84G19 36329057
    1838 7wjv:A (1.724) BS01 AMP 3.1.3.11 GO:0000122 ... P09467 35786925
    1839 7wjv:B (1.724) BS03 AMP 3.1.3.11 GO:0000122 ... P09467 35786925
    1840 7wjv:C (1.724) BS01 AMP 3.1.3.11 GO:0000122 ... P09467 35786925
    1841 7wjv:D (1.724) BS01 AMP 3.1.3.11 GO:0000122 ... P09467 35786925
    1842 7xbt:A (1.84) BS01 AMP ? N/A A6YEH8 36278314
    1843 7xmv:A (2.6) BS03 AMP 2.7.6.1 GO:0000287 ... P0A717 35736577
    1844 7xmv:A (2.6) BS04 AMP 2.7.6.1 GO:0000287 ... P0A717 35736577
    1845 7xmv:B (2.6) BS02 AMP 2.7.6.1 GO:0000287 ... P0A717 35736577
    1846 7xmv:B (2.6) BS05 AMP 2.7.6.1 GO:0000287 ... P0A717 35736577
    1847 7xmv:C (2.6) BS01 AMP 2.7.6.1 GO:0000287 ... P0A717 35736577
    1848 7xmv:C (2.6) BS04 AMP 2.7.6.1 GO:0000287 ... P0A717 35736577
    1849 7xmv:D (2.6) BS04 AMP 2.7.6.1 GO:0000287 ... P0A717 35736577
    1850 7xmv:D (2.6) BS05 AMP 2.7.6.1 GO:0000287 ... P0A717 35736577
    1851 7xmv:E (2.6) BS03 AMP 2.7.6.1 GO:0000287 ... P0A717 35736577
    1852 7xmv:E (2.6) BS05 AMP 2.7.6.1 GO:0000287 ... P0A717 35736577
    1853 7xmv:F (2.6) BS02 AMP 2.7.6.1 GO:0000287 ... P0A717 35736577
    1854 7xmv:F (2.6) BS05 AMP 2.7.6.1 GO:0000287 ... P0A717 35736577
    1855 7ywk:A (1.39) BS01 AMP 5.1.1.11 N/A P09095 36070491
    1856 7ywk:B (1.39) BS01 AMP 5.1.1.11 N/A P09095 36070491
    1857 7zd6:k (3.16) BS01 AMP ? GO:0005737 ... A0A8N7XJK5 36104567
    1858 7zdh:k (3.46) BS01 AMP ? GO:0005737 ... A0A8N7XJK5 36104567
    1859 7zdm:k (3.44) BS01 AMP ? GO:0005737 ... A0A8N7XJK5 36104567
    1860 7zdp:k (3.88) BS01 AMP ? GO:0005737 ... A0A8N7XJK5 36104567
    1861 7zeb:k (3.8) BS01 AMP ? GO:0005737 ... A0A8N7XJK5 36104567
    1862 8a8k:A (3.1) BS01 AMP N/A N/A N/A 37277534
    1863 8a8k:B (3.1) BS01 AMP N/A N/A N/A 37277534
    1864 8a8k:C (3.1) BS01 AMP N/A N/A N/A 37277534
    1865 8a8k:D (3.1) BS01 AMP N/A N/A N/A 37277534
    1866 8a8k:E (3.1) BS01 AMP N/A N/A N/A 37277534
    1867 8a8k:F (3.1) BS01 AMP N/A N/A N/A 37277534
    1868 8bik:C (2.5) BS01 AMP ? GO:0004672 ... P54619 N/A
    1869 8bik:C (2.5) BS02 AMP ? GO:0004672 ... P54619 N/A
    1870 8bik:F (2.5) BS01 AMP ? GO:0004672 ... P54619 N/A
    1871 8bik:F (2.5) BS02 AMP ? GO:0004672 ... P54619 N/A
    1872 8bik:F (2.5) BS03 AMP ? GO:0004672 ... P54619 N/A
    1873 8biq:A (2.8) BS01 AMP 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    1874 8biq:C (2.8) BS01 AMP 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    1875 8biq:D (2.8) BS01 AMP 6.2.1.1
    6.2.1.17
    6.2.1.2
    6.2.1.40
    GO:0003987 ... A4YDT1 N/A
    1876 8bxg:A (3.16) BS02 AMP ? GO:0000166 ... P03819 38834573
    1877 8bxg:B (3.16) BS02 AMP ? GO:0000166 ... P03819 38834573
    1878 8by2:A (3.18) BS02 AMP ? GO:0000166 ... P03819 38834573
    1879 8by2:B (3.18) BS03 AMP ? GO:0000166 ... P03819 38834573
    1880 8c4n:A (1.75) BS01 AMP 2.7.7.85 GO:0004016 ... Q8Y5E4 37223749
    1881 8c4n:B (1.75) BS01 AMP 2.7.7.85 GO:0004016 ... Q8Y5E4 37223749
    1882 8cp4:A (3.19) BS02 AMP ? GO:0000166 ... Q6LXV7 38100250
    1883 8dbk:B (2.1) BS02 AMP 2.7.6.1 GO:0000287 ... P60891 36747094
    1884 8dbk:F (2.1) BS02 AMP 2.7.6.1 GO:0000287 ... P60891 36747094
    1885 8dqj:A (1.54) BS01 AMP ? GO:0004812 ... A0A3G3IHP7 36395426
    1886 8f5x:A (1.7) BS01 AMP 4.6.1.18 GO:0003676 ... P10153 38588810
    1887 8ghr:A (3.2) BS03 AMP ?
    3.1.4.1
    3.6.1.9
    GO:0003676 ... P0DOX5
    P22413
    37400538
    1888 8ghr:B (3.2) BS03 AMP ?
    3.1.4.1
    3.6.1.9
    GO:0003676 ... P0DOX5
    P22413
    37400538
    1889 8gpb:A (2.2) BS02 AMP 2.4.1.1 GO:0000166 ... P00489 1900534 MOAD: Kd=250uM
    PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    1890 8gpb:A (2.2) BS03 AMP 2.4.1.1 GO:0000166 ... P00489 1900534 MOAD: Kd=250uM
    PDBbind: -logKd/Ki=3.60, Kd=0.25mM
    1891 8hcc:A (2.0) BS01 AMP 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    1892 8hcc:B (2.0) BS01 AMP 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    1893 8hcc:C (2.0) BS01 AMP 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    1894 8hcc:D (2.0) BS01 AMP 3.1.11.2 GO:0003676 ... Q91XB0 37870446
    1895 8hlk:A (2.7) BS02 AMP ? GO:0003824 ... O54504 38340732
    1896 8hu6:D (2.33) BS02 AMP 3.5.4.6 GO:0003876 ... Q01433 36563792
    1897 8i51:A (2.76) BS01 AMP ? N/A Q00IB3 N/A
    1898 8i51:B (2.76) BS01 AMP ? N/A Q00IB3 N/A
    1899 8i51:C (2.76) BS01 AMP ? N/A Q00IB3 N/A
    1900 8i51:D (2.76) BS01 AMP ? N/A Q00IB3 N/A
    1901 8i51:E (2.76) BS01 AMP ? N/A Q00IB3 N/A
    1902 8i51:F (2.76) BS01 AMP ? N/A Q00IB3 N/A
    1903 8i6m:A (2.59) BS01 AMP ? N/A Q00IB3 N/A
    1904 8i6m:B (2.59) BS01 AMP ? N/A Q00IB3 N/A
    1905 8i6m:C (2.59) BS01 AMP ? N/A Q00IB3 N/A
    1906 8i6m:D (2.59) BS01 AMP ? N/A Q00IB3 N/A
    1907 8i6m:E (2.59) BS01 AMP ? N/A Q00IB3 N/A
    1908 8i6m:F (2.59) BS01 AMP ? N/A Q00IB3 N/A
    1909 8i8d:A (2.51) BS02 AMP ? N/A Q00IB3 N/A
    1910 8i8d:B (2.51) BS02 AMP ? N/A Q00IB3 N/A
    1911 8i8d:C (2.51) BS02 AMP ? N/A Q00IB3 N/A
    1912 8i8d:D (2.51) BS02 AMP ? N/A Q00IB3 N/A
    1913 8i8d:E (2.51) BS02 AMP ? N/A Q00IB3 N/A
    1914 8i8d:F (2.51) BS02 AMP ? N/A Q00IB3 N/A
    1915 8i8e:A (2.63) BS01 AMP ? N/A Q00IB3 N/A
    1916 8i8e:B (2.63) BS01 AMP ? N/A Q00IB3 N/A
    1917 8i8e:C (2.63) BS01 AMP ? N/A Q00IB3 N/A
    1918 8i8e:D (2.63) BS01 AMP ? N/A Q00IB3 N/A
    1919 8i8e:E (2.63) BS01 AMP ? N/A Q00IB3 N/A
    1920 8i8e:F (2.63) BS02 AMP ? N/A Q00IB3 N/A
    1921 8izj:A (1.6) BS01 AMP 2.4.2.7 GO:0000287 ... P69503 N/A
    1922 8izj:B (1.6) BS01 AMP 2.4.2.7 GO:0000287 ... P69503 N/A
    1923 8jbi:A (2.356) BS01 AMP 2.7.-.- N/A D0ZIB5 N/A
    1924 8jbi:B (2.356) BS01 AMP 2.7.-.- N/A D0ZIB5 N/A
    1925 8jbi:C (2.356) BS01 AMP 2.7.-.- N/A D0ZIB5 N/A
    1926 8jbi:D (2.356) BS01 AMP 2.7.-.- N/A D0ZIB5 N/A
    1927 8jbi:D (2.356) BS02 AMP 2.7.-.- N/A D0ZIB5 N/A
    1928 8jgl:A (3.14) BS01 AMP N/A N/A P51791 39107281
    1929 8jgl:B (3.14) BS01 AMP N/A N/A P51791 39107281
    1930 8jka:A (2.25) BS03 AMP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    1931 8jo3:A (2.66) BS01 AMP ? N/A A0A2H5FI52 38776962
    1932 8jyu:A (2.19) BS01 AMP N/A N/A Q00IB3 N/A
    1933 8jyu:B (2.19) BS01 AMP N/A N/A Q00IB3 N/A
    1934 8jyu:C (2.19) BS01 AMP N/A N/A Q00IB3 N/A
    1935 8jyu:D (2.19) BS01 AMP N/A N/A Q00IB3 N/A
    1936 8jyu:E (2.19) BS01 AMP N/A N/A Q00IB3 N/A
    1937 8jyu:F (2.19) BS01 AMP N/A N/A Q00IB3 N/A
    1938 8ofg:A (2.4) BS01 AMP 2.7.7.85 GO:0004016 ... Q8DP14 N/A
    1939 8oif:A (3.5) BS01 AMP 6.2.1.- GO:0004842 ... P41226 38042859
    1940 8oto:A (1.8) BS01 AMP 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 N/A
    1941 8qjn:B (1.65) BS04 AMP N/A N/A N/A N/A
    1942 8rj6:A (1.9) BS03 AMP N/A GO:0000287 ... P69441 39121211
    1943 8rj6:B (1.9) BS02 AMP N/A GO:0000287 ... P69441 39121211
    1944 8se9:A (3.2) BS01 AMP 6.2.1.- GO:0004842 ... P41226 37553340
    1945 8sea:A (3.4) BS01 AMP 6.2.1.- GO:0004842 ... P41226 37553340
    1946 8seb:A (3.24) BS01 AMP 6.2.1.- GO:0004842 ... P41226 37553340
    1947 8seq:A (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    1948 8seq:B (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    1949 8seq:C (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    1950 8seq:D (3.4) BS01 AMP ? GO:0003151 ... P11716 37192614
    1951 8sex:A (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    1952 8sex:B (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    1953 8sex:C (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    1954 8sex:D (2.84) BS01 AMP ? GO:0003151 ... P11716 37192614
    1955 8sf3:A (1.7) BS01 AMP 6.2.1.1 GO:0003987 ... A4I093 N/A
    1956 8slf:A (2.9) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    1957 8slf:B (2.9) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    1958 8slh:A (3.05) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    1959 8sr7:A (1.97) BS02 AMP ? GO:0005216 ... F2UB89 38773335
    1960 8sr7:B (1.97) BS03 AMP ? GO:0005216 ... F2UB89 38773335
    1961 8sr7:C (1.97) BS03 AMP ? GO:0005216 ... F2UB89 38773335
    1962 8sr7:D (1.97) BS05 AMP ? GO:0005216 ... F2UB89 38773335
    1963 8srf:A (2.52) BS02 AMP ? GO:0005216 ... F2UB89 N/A
    1964 8srf:B (2.52) BS03 AMP ? GO:0005216 ... F2UB89 N/A
    1965 8srf:C (2.52) BS03 AMP ? GO:0005216 ... F2UB89 N/A
    1966 8srf:D (2.52) BS05 AMP ? GO:0005216 ... F2UB89 N/A
    1967 8srg:A (3.03) BS02 AMP ? GO:0005216 ... F2UB89 N/A
    1968 8srg:B (3.03) BS03 AMP ? GO:0005216 ... F2UB89 N/A
    1969 8srg:C (3.03) BS03 AMP ? GO:0005216 ... F2UB89 N/A
    1970 8srg:D (3.03) BS05 AMP ? GO:0005216 ... F2UB89 N/A
    1971 8sv8:A (3.38) BS01 AMP 6.2.1.- GO:0004842 ... P41226 37553340
    1972 8t5n:A (1.65) BS02 AMP 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    1973 8tkb:A (1.71) BS01 AMP N/A GO:0000215 ... O57899 N/A
    1974 8tkb:A (1.71) BS02 AMP N/A GO:0000215 ... O57899 N/A
    1975 8u2t:A (1.65) BS01 AMP 6.2.1.1 GO:0003987 ... A4I093 N/A
    1976 8u2u:A (1.97) BS01 AMP 6.2.1.1 GO:0003987 ... A4I093 N/A
    1977 8u6x:A (2.44) BS03 AMP N/A GO:0003910 ... N/A 38245708
    1978 8uce:A (2.12) BS01 AMP ? GO:0005524 ... A0A075LQ94 38421610
    1979 8uce:B (2.12) BS01 AMP ? GO:0005524 ... A0A075LQ94 38421610
    1980 8uci:A (2.14) BS01 AMP 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    1981 8uci:B (2.14) BS01 AMP 6.5.1.3 GO:0005524 ... A0A075LQ94 38421610
    1982 8uzn:A (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    1983 8uzn:B (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    1984 8uzn:C (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    1985 8uzn:D (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    1986 8v4o:A (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    1987 8v4o:B (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    1988 8v4o:C (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    1989 8v4r:A (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    1990 8v4r:B (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    1991 8v4r:C (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    1992 8vdn:A (2.39) BS04 AMP 6.5.1.1 N/A P18858 38522520
    1993 8vw0:A (1.7) BS01 AMP 6.3.2.9 GO:0005515 ... P14900 N/A
    1994 8vzl:A (2.41) BS04 AMP 6.5.1.1 N/A P18858 38522520
    1995 8vzm:A (2.51) BS04 AMP 6.5.1.1 N/A P18858 38522520
    1996 8wev:A (2.29) BS01 AMP N/A N/A A0A3N2H3K2 N/A
    1997 8wev:B (2.29) BS01 AMP N/A N/A A0A3N2H3K2 N/A
    1998 8zoz:A (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    1999 8zoz:B (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A
    2000 8zoz:C (3.2) BS01 AMP 1.2.1.- GO:0000166 ... A0A059ZTK9 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218