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BioLiP
Download all results in tab-seperated text for 11 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1b2i:A (-1.00) BS01 AMH 3.4.21.7 N/A P00747 10625440 PDBbind: -logKd/Ki=5.51, IC50=3.1uM
    BindingDB: Kd=1100nM, IC50=3100nM, Ki=25000000nM
    2 1ceb:A (2.07) BS01 AMH 3.4.21.7 N/A P00747 8611560 MOAD: Kd~1uM
    PDBbind: -logKd/Ki=6.00, Kd=1uM
    BindingDB: Kd=1100nM, IC50=3100nM, Ki=25000000nM
    3 1ceb:B (2.07) BS01 AMH 3.4.21.7 N/A P00747 8611560 MOAD: Kd~1uM
    BindingDB: Kd=1100nM, IC50=3100nM, Ki=25000000nM
    4 5rpg:A (1.5) BS01 AMH 3.4.21.64 GO:0004252 ... P06873 34076593
    5 5v3c:A (1.419) BS02 AMH 2.4.2.29 GO:0002099 ... P28720 31808981
    6 6nmb:A (2.3) BS01 AMH 3.4.21.73 GO:0004252 ... P00749 30814058 MOAD: Ki=2.01mM
    PDBbind: -logKd/Ki=2.70, Ki=2.01mM
    BindingDB: Ki=2000000nM
    7 6nmb:B (2.3) BS01 AMH 3.4.21.73 GO:0004252 ... P00749 30814058 MOAD: Ki=2.01mM
    BindingDB: Ki=2000000nM
    8 6nmb:C (2.3) BS01 AMH 3.4.21.73 GO:0004252 ... P00749 30814058 MOAD: Ki=2.01mM
    BindingDB: Ki=2000000nM
    9 6nmb:D (2.3) BS01 AMH 3.4.21.73 GO:0004252 ... P00749 30814058 MOAD: Ki=2.01mM
    BindingDB: Ki=2000000nM
    10 6yzc:A (1.42) BS02 AMH 3.4.21.4 GO:0004175 ... P00760 N/A
    11 8sp7:A (1.83) BS01 AMH 2.7.7.49 N/A O00370 38719805
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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