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BioLiP
Download all results in tab-seperated text for 242 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    201 7lqk:A (2.1) BS01 ALA ? GO:0005886 ... O67854 34002696
    202 7lql:A (2.6) BS01 ALA ? GO:0005886 ... O67854 34002696
    203 7qfo:A (1.9) BS01 ALA 5.6.2.2 GO:0003677 ... Q02880 35660158
    204 7uio:Bc (3.3) BS02 ALA ? GO:0000122 ... P40356 36731470
    205 7xll:A (1.76) BS04 ALA 5.1.1.1 GO:0003824 ... N/A 36732053
    206 7xll:B (1.76) BS01 ALA 5.1.1.1 GO:0003824 ... N/A 36732053
    207 7ypm:A (1.984) BS02 ALA ? GO:0005829 ... A0A318BC23 36300723
    208 7ypm:B (1.984) BS02 ALA ? GO:0005829 ... A0A318BC23 36300723
    209 7ypm:B (1.984) BS03 ALA ? GO:0005829 ... A0A318BC23 36300723
    210 7ypm:B (1.984) BS05 ALA ? GO:0005829 ... A0A318BC23 36300723
    211 7ypm:D (1.984) BS03 ALA ? GO:0005829 ... A0A318BC23 36300723
    212 7ypm:D (1.984) BS04 ALA ? GO:0005829 ... A0A318BC23 36300723
    213 7zvo:A (1.65) BS02 ALA ? N/A Q8A921 36660365
    214 8b0d:AAA (1.62) BS01 ALA ? GO:0016020 ... C1F2K5 36533564
    215 8blu:D (1.5) BS03 ALA ? N/A O00560 N/A
    216 8f6m:A (2.15) BS03 ALA 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    217 8f6m:B (2.15) BS03 ALA 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    218 8f6m:C (2.15) BS03 ALA 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    219 8f6m:D (2.15) BS03 ALA 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    220 8f6m:E (2.15) BS03 ALA 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    221 8f6m:F (2.15) BS04 ALA 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    222 8f6m:G (2.15) BS03 ALA 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    223 8f6m:H (2.15) BS03 ALA 2.7.10.2
    2.7.11.1
    2.7.1.40    		 GO:0000287 ... P11974 37171062
    224 8jdw:A (2.3) BS01 ALA 2.1.4.1 GO:0005515 ... P50440 9915841
    225 8oud:A (2.31) BS01 ALA ? GO:0001618 ... Q15758 38671230
    226 8oud:B (2.31) BS01 ALA ? GO:0001618 ... Q15758 38671230
    227 8oud:C (2.31) BS01 ALA ? GO:0001618 ... Q15758 38671230
    228 8ouh:A (2.62) BS01 ALA ? GO:0001618 ... Q15758 38671230
    229 8ouh:B (2.62) BS01 ALA ? GO:0001618 ... Q15758 38671230
    230 8oui:B (3.39) BS01 ALA N/A GO:0015293 ... N/A 38671230
    231 8oui:C (3.39) BS01 ALA N/A GO:0015293 ... N/A 38671230
    232 8ouj:A (3.5) BS01 ALA ? GO:0001618 ... Q15758 38671230
    233 8ouj:B (3.5) BS01 ALA ? GO:0001618 ... Q15758 38671230
    234 8wnt:B (3.42) BS01 ALA ? GO:0003333 ... Q9NS82 38589439
    235 8wt1:A (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    236 8wt1:B (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    237 8wt1:C (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    238 8wt1:D (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    239 8wt1:E (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    240 8wt1:F (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    241 8wt1:G (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    242 8wt1:H (2.0) BS01 ALA ? GO:0004252 ... A0A3L7D5Q2 38426217
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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