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BioLiP
Download all results in tab-seperated text for 834 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 8ooq:T (2.91) BS03 AKG N/A GO:0003824 ... N/A 38243071
    802 8ooq:T (2.91) BS04 AKG N/A GO:0003824 ... N/A 38243071
    803 8ooq:U (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    804 8ooq:U (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    805 8ooq:V (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    806 8ooq:V (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    807 8ooq:X (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    808 8ooq:X (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    809 8ooq:Y (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    810 8ooq:Y (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    811 8ooq:Z (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    812 8ooq:Z (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    813 8ooq:a (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    814 8ooq:a (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    815 8ooq:b (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    816 8ooq:b (2.91) BS03 AKG N/A GO:0003824 ... N/A 38243071
    817 8ooq:c (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    818 8ooq:c (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    819 8q6d:A (1.4) BS03 AKG N/A N/A Q9GZT9 N/A
    820 8q6e:A (1.37) BS05 AKG N/A N/A Q9GZT9 N/A
    821 8vha:B (2.28) BS02 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    822 8vhb:A (1.89) BS01 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    823 8vhb:C (1.89) BS01 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    824 8w78:A (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    825 8w78:B (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    826 8w78:C (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    827 8w78:D (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    828 8xcs:A (2.63) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    829 8xcw:A (2.87) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    830 8xd0:A (2.83) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    831 8xd6:A (2.79) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    832 8xd6:A (2.79) BS03 AKG 1.4.1.3 GO:0004352 ... O74024 38750092
    833 8znc:A (2.41) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 N/A
    834 8zng:A (2.5) BS02 AKG 1.4.1.3 GO:0004352 ... O74024 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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