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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 834 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    601 6s0s:A (2.4) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    602 6s0s:B (2.4) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    603 6s0s:C (2.4) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    604 6s0s:D (2.4) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    605 6s0s:E (2.4) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    606 6s0s:F (2.4) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    607 6s0u:A (2.15) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    608 6s0u:B (2.15) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    609 6s0u:C (2.15) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    610 6s0u:D (2.15) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    611 6s0u:E (2.15) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    612 6s0u:F (2.15) BS01 AKG 1.14.11.37 GO:0016491 ... Q6L732 32592631
    613 6te3:A (2.3) BS01 AKG 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 N/A
    614 6tec:A (2.4) BS02 AKG 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 N/A
    615 6tes:A (2.2) BS01 AKG 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 N/A
    616 6teu:A (3.0) BS01 AKG 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 N/A
    617 6tex:A (2.3) BS01 AKG 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 N/A
    618 6tez:A (2.7) BS02 AKG 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 N/A
    619 6tto:A (1.31) BS01 AKG ? GO:0002238 ... Q6EZB3 32182320
    620 6vp4:A (1.83) BS02 AKG 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    621 6vp4:B (1.83) BS02 AKG 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    622 6vp4:C (1.83) BS02 AKG 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    623 6vp4:D (1.83) BS02 AKG 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    624 6vp5:A (1.97) BS02 AKG 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    625 6vp5:B (1.97) BS02 AKG 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    626 6vp5:C (1.97) BS02 AKG 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    627 6vp5:D (1.97) BS02 AKG 1.13.12.19
    1.14.20.7    		 GO:0009693 ... P32021 33522811
    628 6xo3:A (1.85) BS01 AKG 1.14.11.78 GO:0016491 ... A0A3B6UEU3 33361191
    629 6xoj:A (1.45) BS02 AKG 1.14.11.78 GO:0016491 ... A0A3B6UEU3 33361191
    630 6y0n:A (1.86) BS02 AKG 1.14.11.41 GO:0005506 ... Q6WZB0 32939282
    631 6y0q:A (1.75) BS01 AKG 1.14.11.33 GO:0005515 ... P05050 32939282
    632 6yei:F (2.02) BS03 AKG 1.4.1.3 GO:0004352 ... Q43314 32655590
    633 6ypv:A (2.1) BS02 AKG 1.14.11.33 GO:0005515 ... P05050 32939282
    634 6yw1:A (1.46) BS03 AKG 1.14.11.29 GO:0005506 ... Q9GZT9 33319810
    635 6yyu:A (2.11) BS02 AKG 1.14.11.16 GO:0018193 ... Q12797 34163896
    636 6yyw:A (2.27) BS03 AKG 1.14.11.16 GO:0018193 ... Q12797 34163896
    637 7de2:A (1.9) BS01 AKG 1.14.11.- GO:0016114 ... A0A2I1BSX0 34285212
    638 7de2:B (1.9) BS01 AKG 1.14.11.- GO:0016114 ... A0A2I1BSX0 34285212
    639 7dt0:A (2.43) BS01 AKG ? GO:0046872 ... S5TUM1 N/A
    640 7dt0:B (2.43) BS01 AKG ? GO:0046872 ... S5TUM1 N/A
    641 7dt0:C (2.43) BS01 AKG ? GO:0046872 ... S5TUM1 N/A
    642 7dt0:D (2.43) BS01 AKG ? GO:0046872 ... S5TUM1 N/A
    643 7dt0:E (2.43) BS01 AKG ? GO:0046872 ... S5TUM1 N/A
    644 7dt0:F (2.43) BS01 AKG ? GO:0046872 ... S5TUM1 N/A
    645 7dt0:G (2.43) BS01 AKG ? GO:0046872 ... S5TUM1 N/A
    646 7dt0:H (2.43) BS01 AKG ? GO:0046872 ... S5TUM1 N/A
    647 7e00:A (1.92) BS02 AKG ? GO:0046872 ... S5TUM1 N/A
    648 7e06:A (1.97) BS01 AKG ? GO:0046872 ... S5TUM1 N/A
    649 7e06:B (1.97) BS01 AKG ? GO:0046872 ... S5TUM1 N/A
    650 7e07:A (2.14) BS01 AKG ? GO:0046872 ... S5TUM1 N/A
    651 7e07:B (2.14) BS02 AKG ? GO:0046872 ... S5TUM1 N/A
    652 7e37:A (2.09) BS02 AKG 1.14.20.8 GO:0009611 ... A0A0N9HQ36 34969844
    653 7e37:B (2.09) BS02 AKG 1.14.20.8 GO:0009611 ... A0A0N9HQ36 34969844
    654 7ekd:A (1.899) BS01 AKG 1.14.11.15 GO:0009416 ... Q9FU53 35046494
    655 7etk:A (1.22027) BS01 AKG 1.14.11.38 GO:0005575 ... Q4WAW9 34796596
    656 7etk:B (1.22027) BS01 AKG 1.14.11.38 GO:0005575 ... Q4WAW9 34796596
    657 7etl:A (1.99213) BS02 AKG 1.14.11.38 GO:0005575 ... Q4WAW9 34796596
    658 7eys:C (1.95) BS01 AKG ? GO:0046872 ... A0A6J4CX17 35013177
    659 7f79:A (2.7) BS02 AKG ? GO:0000166 ... A0A1D8PMH8 34271431
    660 7f79:B (2.7) BS02 AKG ? GO:0000166 ... A0A1D8PMH8 34271431
    661 7f79:C (2.7) BS02 AKG ? GO:0000166 ... A0A1D8PMH8 34271431
    662 7f79:D (2.7) BS02 AKG ? GO:0000166 ... A0A1D8PMH8 34271431
    663 7f79:E (2.7) BS02 AKG ? GO:0000166 ... A0A1D8PMH8 34271431
    664 7f79:F (2.7) BS02 AKG ? GO:0000166 ... A0A1D8PMH8 34271431
    665 7jqi:A (2.4) BS01 AKG 1.1.1.79
    1.1.1.81    		 GO:0000166 ... A0A140NAE3 N/A
    666 7jsd:A (2.5) BS02 AKG N/A N/A N/A 34937913
    667 7jsd:B (2.5) BS02 AKG N/A N/A N/A 34937913
    668 7jsd:C (2.5) BS02 AKG N/A N/A N/A 34937913
    669 7jsd:D (2.5) BS01 AKG N/A N/A N/A 34937913
    670 7olp:A (1.55) BS01 AKG 1.14.11.81 N/A Q5AR53 35980821
    671 7olr:A (2.1) BS01 AKG 1.14.11.81 N/A Q5AR53 35980821
    672 7p50:A (1.16) BS01 AKG N/A GO:0006808 ... N/A 34445335
    673 7p50:B (1.16) BS02 AKG N/A GO:0006808 ... N/A 34445335
    674 7p50:C (1.16) BS02 AKG N/A GO:0006808 ... N/A 34445335
    675 7p52:A (1.20002) BS02 AKG ? GO:0005515 ... Q60381 34445335
    676 7pjm:A (2.1) BS01 AKG 1.1.1.42 GO:0000287 ... O75874 35970853
    677 7pjm:B (2.1) BS03 AKG 1.1.1.42 GO:0000287 ... O75874 35970853
    678 7pjm:C (2.1) BS02 AKG 1.1.1.42 GO:0000287 ... O75874 35970853
    679 7q5x:A (1.21) BS03 AKG 1.14.11.29 GO:0005506 ... Q9GZT9 37449559
    680 7qtd:A (1.75) BS02 AKG ? GO:0005737 ... Q2I752 N/A
    681 7qtd:B (1.75) BS02 AKG ? GO:0005737 ... Q2I752 N/A
    682 7qtd:C (1.75) BS02 AKG ? GO:0005737 ... Q2I752 N/A
    683 7qtd:D (1.75) BS02 AKG ? GO:0005737 ... Q2I752 N/A
    684 7twe:A (2.41) BS02 AKG ? GO:0046872 ... A0A2U2H2N4 N/A
    685 7twe:B (2.41) BS02 AKG ? GO:0046872 ... A0A2U2H2N4 N/A
    686 7u6h:A (2.0) BS02 AKG ? N/A A0A0F4XRB2 36913566
    687 7u6h:B (2.0) BS02 AKG ? N/A A0A0F4XRB2 36913566
    688 7u6h:C (2.0) BS02 AKG ? N/A A0A0F4XRB2 36913566
    689 7u6h:D (2.0) BS02 AKG ? N/A A0A0F4XRB2 36913566
    690 7v2t:A (2.20006) BS01 AKG N/A N/A N/A N/A
    691 7v2u:A (2.0001) BS01 AKG N/A N/A N/A N/A
    692 7v2x:A (2.08387) BS01 AKG N/A N/A N/A N/A
    693 7v34:A (2.00017) BS02 AKG N/A N/A N/A N/A
    694 7v36:A (1.96009) BS02 AKG N/A N/A N/A N/A
    695 7v3e:A (2.12) BS01 AKG N/A N/A N/A N/A
    696 7v3e:B (2.12) BS02 AKG N/A N/A N/A N/A
    697 7v3e:C (2.12) BS02 AKG N/A N/A N/A N/A
    698 7v3n:A (1.85001) BS03 AKG N/A N/A N/A N/A
    699 7v3o:A (1.83005) BS01 AKG N/A N/A N/A N/A
    700 7v4m:B (1.9) BS01 AKG ? GO:0046872 ... C4NCJ7 N/A
    701 7v57:A (2.35) BS02 AKG ? GO:0046872 ... A0A1U8X168 N/A
    702 7vgn:A (1.83) BS01 AKG ? GO:0005506 ... A6YEH4 36176888
    703 7vjv:A (1.75) BS02 AKG 1.14.11.- GO:0005515 ... Q3KRA9 35120926
    704 7w5t:A (1.74) BS02 AKG ? GO:0046872 ... A0A1U8X168 35435717
    705 7wcv:A (2.3) BS01 AKG 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 35793358
    706 7wkv:A (2.1) BS03 AKG 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    707 7wkv:C (2.1) BS03 AKG 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    708 7wkv:E (2.1) BS03 AKG 1.14.11.53 GO:0006397 ... Q6P6C2 35333330
    709 7wsb:A (2.87) BS03 AKG 1.14.11.38 GO:0005575 ... Q4WAW9 35911443
    710 7wsb:B (2.87) BS03 AKG 1.14.11.38 GO:0005575 ... Q4WAW9 35911443
    711 7wsb:C (2.87) BS03 AKG 1.14.11.38 GO:0005575 ... Q4WAW9 35911443
    712 7wsb:D (2.87) BS03 AKG 1.14.11.38 GO:0005575 ... Q4WAW9 35911443
    713 7wsb:E (2.87) BS03 AKG 1.14.11.38 GO:0005575 ... Q4WAW9 35911443
    714 7wsb:F (2.87) BS03 AKG 1.14.11.38 GO:0005575 ... Q4WAW9 35911443
    715 7y5p:A (1.7) BS02 AKG ? GO:0005506 ... A6YEH4 36176888
    716 7y5p:B (1.7) BS01 AKG ? GO:0005506 ... A6YEH4 36176888
    717 7yhe:A (1.67) BS01 AKG ? GO:0005506 ... A6YEH4 36176888
    718 7yhe:B (1.67) BS01 AKG ? GO:0005506 ... A6YEH4 36176888
    719 7yxg:A (1.641) BS02 AKG 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    720 7yxg:B (1.641) BS02 AKG 1.14.11.-
    3.1.1.4    		 GO:0005737 ... Q9VU77 35410347
    721 8acv:A (2.26) BS01 AKG ? GO:0046872 ... A0A075X7C6 N/A
    722 8acv:B (2.26) BS01 AKG ? GO:0046872 ... A0A075X7C6 N/A
    723 8aut:A (2.685) BS02 AKG ? GO:0046872 ... A0A075X7C6 N/A
    724 8aut:B (2.685) BS02 AKG ? GO:0046872 ... A0A075X7C6 N/A
    725 8aut:C (2.685) BS02 AKG ? GO:0046872 ... A0A075X7C6 N/A
    726 8aut:D (2.685) BS02 AKG ? GO:0046872 ... A0A075X7C6 N/A
    727 8bw7:A (3.53) BS01 AKG ? GO:0005452 ... O35956 37482561
    728 8cv8:A (1.532) BS02 AKG 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    729 8cvb:A (1.532) BS02 AKG 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    730 8cve:A (1.53) BS03 AKG 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    731 8cvg:A (1.56) BS02 AKG 1.14.11.11 GO:0002238 ... Q9XJ43 N/A
    732 8ew9:A (2.0) BS01 AKG ? GO:0016872 ... P38885 36739946
    733 8h7v:A (1.97) BS01 AKG ? GO:0046872 ... S5TUM1 36974966
    734 8h7v:B (1.97) BS01 AKG ? GO:0046872 ... S5TUM1 36974966
    735 8h7y:A (2.14) BS02 AKG ? GO:0046872 ... S5TUM1 36974966
    736 8h7y:B (2.14) BS02 AKG ? GO:0046872 ... S5TUM1 36974966
    737 8hb2:B (3.06) BS02 AKG 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    738 8hb2:C (3.06) BS02 AKG 1.14.11.51 GO:0005515 ... Q8MNT9 38255759
    739 8hiv:A (2.20003) BS01 AKG N/A N/A N/A N/A
    740 8it9:A (2.14) BS02 AKG 1.14.11.-
    1.14.11.53    		 GO:0001659 ... Q9C0B1 37418628
    741 8jpw:A (2.66) BS02 AKG 1.4.3.11 GO:0016491 ... Q8L3C7 37487431
    742 8k0m:A (3.17) BS02 AKG N/A N/A Q32P28 39245686
    743 8kar:A (1.73) BS01 AKG N/A N/A A0A0E3K1C8 N/A
    744 8kar:B (1.73) BS01 AKG N/A N/A A0A0E3K1C8 N/A
    745 8kar:C (1.73) BS01 AKG N/A N/A A0A0E3K1C8 N/A
    746 8one:A (2.3) BS01 AKG 1.14.11.4
    2.4.1.50
    2.4.1.66    		 GO:0001701 ... O60568 37446392
    747 8ooo:A (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    748 8ooo:A (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    749 8ooo:B (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    750 8ooo:B (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    751 8ooo:C (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    752 8ooo:C (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    753 8ooo:D (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    754 8ooo:D (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    755 8ooo:E (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    756 8ooo:E (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    757 8ooo:F (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    758 8ooo:F (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    759 8ooo:G (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    760 8ooo:G (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    761 8ooo:H (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    762 8ooo:H (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    763 8ooo:I (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    764 8ooo:I (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    765 8ooo:J (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    766 8ooo:J (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    767 8ooo:K (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    768 8ooo:K (2.149) BS03 AKG N/A GO:0003824 ... N/A 38243071
    769 8ooo:L (2.149) BS01 AKG N/A GO:0003824 ... N/A 38243071
    770 8ooo:L (2.149) BS02 AKG N/A GO:0003824 ... N/A 38243071
    771 8ooq:A (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    772 8ooq:A (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    773 8ooq:B (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    774 8ooq:B (2.91) BS03 AKG N/A GO:0003824 ... N/A 38243071
    775 8ooq:C (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    776 8ooq:C (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    777 8ooq:D (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    778 8ooq:D (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    779 8ooq:E (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    780 8ooq:E (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    781 8ooq:F (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    782 8ooq:F (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    783 8ooq:G (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    784 8ooq:G (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    785 8ooq:H (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    786 8ooq:H (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    787 8ooq:I (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    788 8ooq:I (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    789 8ooq:J (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    790 8ooq:J (2.91) BS03 AKG N/A GO:0003824 ... N/A 38243071
    791 8ooq:K (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    792 8ooq:K (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    793 8ooq:L (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    794 8ooq:L (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    795 8ooq:P (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    796 8ooq:P (2.91) BS03 AKG N/A GO:0003824 ... N/A 38243071
    797 8ooq:Q (2.91) BS01 AKG N/A GO:0003824 ... N/A 38243071
    798 8ooq:Q (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    799 8ooq:S (2.91) BS02 AKG N/A GO:0003824 ... N/A 38243071
    800 8ooq:S (2.91) BS03 AKG N/A GO:0003824 ... N/A 38243071
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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