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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 194 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 5wel:A (4.4) BS02 AJP ? GO:0000149 ... D3Z7H4
    P19491    		 28737760
    2 5wel:C (4.4) BS02 AJP ? GO:0000149 ... D3Z7H4
    P19491    		 28737760
    3 5wen:A (6.8) BS01 AJP ? GO:0000149 ... D3Z7H4
    P19491    		 28737760
    4 5wen:C (6.8) BS01 AJP ? GO:0000149 ... D3Z7H4
    P19491    		 28737760
    5 6jb1:B (3.3) BS01 AJP ? GO:0001508 ... A0A1U7R319 31067468
    6 6jb1:D (3.3) BS01 AJP ? GO:0001508 ... A0A1U7R319 31067468
    7 6jb1:F (3.3) BS01 AJP ? GO:0001508 ... A0A1U7R319 31067468
    8 6jb1:H (3.3) BS01 AJP ? GO:0001508 ... A0A1U7R319 31067468
    9 6jb3:B (3.53) BS02 AJP ? GO:0001508 ... A0A1U7R319 31067468
    10 6l7o:A (3.2) BS01 AJP 7.1.1.- GO:0003954 ... Q8DL32 32060291
    11 6l7o:A (3.2) BS02 AJP 7.1.1.- GO:0003954 ... Q8DL32 32060291
    12 6l7o:A (3.2) BS03 AJP 7.1.1.- GO:0003954 ... Q8DL32 32060291
    13 6l7o:B (3.2) BS02 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    14 6l7o:B (3.2) BS03 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    15 6l7o:B (3.2) BS04 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    16 6l7o:B (3.2) BS05 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    17 6l7o:B (3.2) BS06 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    18 6l7o:B (3.2) BS07 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    19 6l7o:B (3.2) BS08 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    20 6l7o:C (3.2) BS01 AJP 7.1.1.- GO:0008137 ... Q8DJ02 32060291
    21 6l7o:C (3.2) BS02 AJP 7.1.1.- GO:0008137 ... Q8DJ02 32060291
    22 6l7o:D (3.2) BS01 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    23 6l7o:D (3.2) BS02 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    24 6l7o:D (3.2) BS03 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    25 6l7o:D (3.2) BS04 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    26 6l7o:D (3.2) BS05 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    27 6l7o:D (3.2) BS06 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    28 6l7o:D (3.2) BS07 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    29 6l7o:D (3.2) BS08 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    30 6l7o:D (3.2) BS09 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    31 6l7o:E (3.2) BS01 AJP 7.1.1.- GO:0009579 ... Q8DL29 32060291
    32 6l7o:F (3.2) BS01 AJP ? GO:0003954 ... Q8DKX9 32060291
    33 6l7o:F (3.2) BS02 AJP ? GO:0003954 ... Q8DKX9 32060291
    34 6l7o:F (3.2) BS03 AJP ? GO:0003954 ... Q8DKX9 32060291
    35 6l7o:F (3.2) BS04 AJP ? GO:0003954 ... Q8DKX9 32060291
    36 6l7o:F (3.2) BS05 AJP ? GO:0003954 ... Q8DKX9 32060291
    37 6l7o:F (3.2) BS06 AJP ? GO:0003954 ... Q8DKX9 32060291
    38 6l7o:F (3.2) BS07 AJP ? GO:0003954 ... Q8DKX9 32060291
    39 6l7o:F (3.2) BS08 AJP ? GO:0003954 ... Q8DKX9 32060291
    40 6l7o:F (3.2) BS09 AJP ? GO:0003954 ... Q8DKX9 32060291
    41 6l7o:F (3.2) BS10 AJP ? GO:0003954 ... Q8DKX9 32060291
    42 6l7o:G (3.2) BS01 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    43 6l7o:G (3.2) BS02 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    44 6l7o:G (3.2) BS03 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    45 6l7o:G (3.2) BS04 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    46 6l7o:G (3.2) BS05 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    47 6l7o:G (3.2) BS06 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    48 6l7o:Q (3.2) BS01 AJP ? GO:0016020 ... V5V791 32060291
    49 6l7o:Q (3.2) BS02 AJP ? GO:0016020 ... V5V791 32060291
    50 6l7o:Q (3.2) BS03 AJP ? GO:0016020 ... V5V791 32060291
    51 6l7p:A (3.6) BS01 AJP 7.1.1.- GO:0003954 ... Q8DL32 32060291
    52 6l7p:A (3.6) BS02 AJP 7.1.1.- GO:0003954 ... Q8DL32 32060291
    53 6l7p:A (3.6) BS03 AJP 7.1.1.- GO:0003954 ... Q8DL32 32060291
    54 6l7p:A (3.6) BS04 AJP 7.1.1.- GO:0003954 ... Q8DL32 32060291
    55 6l7p:B (3.6) BS02 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    56 6l7p:B (3.6) BS03 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    57 6l7p:B (3.6) BS04 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    58 6l7p:B (3.6) BS05 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    59 6l7p:B (3.6) BS06 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    60 6l7p:B (3.6) BS07 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    61 6l7p:B (3.6) BS08 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    62 6l7p:B (3.6) BS09 AJP 7.1.1.- GO:0008137 ... Q8DMR6 32060291
    63 6l7p:C (3.6) BS01 AJP 7.1.1.- GO:0008137 ... Q8DJ02 32060291
    64 6l7p:C (3.6) BS02 AJP 7.1.1.- GO:0008137 ... Q8DJ02 32060291
    65 6l7p:D (3.6) BS01 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    66 6l7p:D (3.6) BS02 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    67 6l7p:D (3.6) BS03 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    68 6l7p:D (3.6) BS04 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    69 6l7p:D (3.6) BS05 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    70 6l7p:D (3.6) BS06 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    71 6l7p:D (3.6) BS07 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    72 6l7p:D (3.6) BS08 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    73 6l7p:D (3.6) BS09 AJP 7.1.1.- GO:0003954 ... Q8DKY0 32060291
    74 6l7p:F (3.6) BS01 AJP ? GO:0003954 ... Q8DKX9 32060291
    75 6l7p:F (3.6) BS02 AJP ? GO:0003954 ... Q8DKX9 32060291
    76 6l7p:F (3.6) BS03 AJP ? GO:0003954 ... Q8DKX9 32060291
    77 6l7p:F (3.6) BS04 AJP ? GO:0003954 ... Q8DKX9 32060291
    78 6l7p:F (3.6) BS05 AJP ? GO:0003954 ... Q8DKX9 32060291
    79 6l7p:F (3.6) BS06 AJP ? GO:0003954 ... Q8DKX9 32060291
    80 6l7p:F (3.6) BS07 AJP ? GO:0003954 ... Q8DKX9 32060291
    81 6l7p:F (3.6) BS08 AJP ? GO:0003954 ... Q8DKX9 32060291
    82 6l7p:G (3.6) BS01 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    83 6l7p:G (3.6) BS02 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    84 6l7p:G (3.6) BS03 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    85 6l7p:G (3.6) BS04 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    86 6l7p:G (3.6) BS05 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    87 6l7p:G (3.6) BS06 AJP 7.1.1.- GO:0005886 ... Q8DL30 32060291
    88 6l7p:Q (3.6) BS01 AJP ? GO:0016020 ... V5V791 32060291
    89 6l7p:Q (3.6) BS02 AJP ? GO:0016020 ... V5V791 32060291
    90 6nt3:A (3.4) BS04 AJP ? GO:0001518 ... D0E0C2
    Q15858    		 N/A
    91 6nt4:A (3.5) BS06 AJP ? GO:0001518 ... D0E0C2
    Q15858    		 30733386
    92 6tcl:A (3.2) BS02 AJP 1.97.1.12 GO:0000287 ... P58576 32170279
    93 6tcl:A1 (3.2) BS46 AJP 1.97.1.12 GO:0000287 ... P58576 32170279
    94 6tcl:AA (3.2) BS02 AJP 1.97.1.12 GO:0000287 ... P58576 32170279
    95 6tcl:L (3.2) BS07 AJP ? GO:0009522 ... P58577 32170279
    96 6tcl:L1 (3.2) BS04 AJP ? GO:0009522 ... P58577 32170279
    97 6tcl:L1 (3.2) BS05 AJP ? GO:0009522 ... P58577 32170279
    98 6tcl:L2 (3.2) BS04 AJP ? GO:0009522 ... P58577 32170279
    99 6tcl:L2 (3.2) BS05 AJP ? GO:0009522 ... P58577 32170279
    100 6tcl:LL (3.2) BS01 AJP ? GO:0009522 ... P58577 32170279
    101 7b00:A (3.98) BS01 AJP ? GO:0003333 ... Q9UHI5 34848541
    102 7etw:A (4.1) BS01 AJP ? GO:0005515 ... Q9Y5U4 N/A
    103 7etw:A (4.1) BS02 AJP ? GO:0005515 ... Q9Y5U4 N/A
    104 7etw:A (4.1) BS03 AJP ? GO:0005515 ... Q9Y5U4 N/A
    105 7etw:A (4.1) BS04 AJP ? GO:0005515 ... Q9Y5U4 N/A
    106 7etw:B (4.1) BS01 AJP ? GO:0000139 ... Q12770 N/A
    107 7lkp:A (3.27) BS03 AJP 7.6.2.1 GO:0001523 ... P78363 33605212
    108 7mhy:A (2.7) BS04 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    109 7mhy:A (2.7) BS05 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    110 7mhy:A (2.7) BS06 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    111 7mhy:A (2.7) BS07 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    112 7mhy:A (2.7) BS08 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    113 7mhy:A (2.7) BS09 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    114 7mhy:A (2.7) BS10 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    115 7mhy:A (2.7) BS11 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    116 7mhy:A (2.7) BS12 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    117 7mhy:A (2.7) BS13 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    118 7mhy:A (2.7) BS14 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    119 7mhz:A (3.2) BS06 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    120 7mhz:A (3.2) BS07 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    121 7mhz:A (3.2) BS08 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    122 7mhz:A (3.2) BS09 AJP 2.3.1.- GO:0000139 ... Q5VTY9 34112694
    123 7oci:B (3.46) BS01 AJP 2.4.99.18 GO:0003674 ... P46964 34974622
    124 7oui:A (2.79) BS07 AJP 1.10.3.9 GO:0003729 ... P83755 34330992
    125 7oui:A (2.79) BS13 AJP 1.10.3.9 GO:0003729 ... P83755 34330992
    126 7oui:B (2.79) BS18 AJP ? GO:0003729 ... P56777 34330992
    127 7oui:G (2.79) BS14 AJP ? GO:0009765 ... P04778 34330992
    128 7oui:N (2.79) BS14 AJP ? GO:0009765 ... P04778 34330992
    129 7oui:O (2.79) BS01 AJP ? GO:0009654 ... P23321 34330992
    130 7oui:S (2.79) BS15 AJP ? GO:0009765 ... Q9XF89 34330992
    131 7oui:Y (2.79) BS17 AJP ? GO:0009765 ... P04778 34330992
    132 7oui:Y (2.79) BS18 AJP ? GO:0009765 ... P04778 34330992
    133 7oui:a (2.79) BS02 AJP 1.10.3.9 GO:0003729 ... P83755 34330992
    134 7oui:a (2.79) BS08 AJP 1.10.3.9 GO:0003729 ... P83755 34330992
    135 7oui:b (2.79) BS18 AJP ? GO:0003729 ... P56777 34330992
    136 7oui:g (2.79) BS14 AJP ? GO:0009765 ... P04778 34330992
    137 7oui:n (2.79) BS14 AJP ? GO:0009765 ... P04778 34330992
    138 7oui:o (2.79) BS01 AJP ? GO:0009654 ... P23321 34330992
    139 7oui:s (2.79) BS15 AJP ? GO:0009765 ... Q9XF89 34330992
    140 7oui:y (2.79) BS17 AJP ? GO:0009765 ... P04778 34330992
    141 7oui:y (2.79) BS18 AJP ? GO:0009765 ... P04778 34330992
    142 7tx7:A (3.8) BS01 AJP ? GO:0005506 ... P0ABE7
    P41440    		 36071163
    143 7tx7:A (3.8) BS02 AJP ? GO:0005506 ... P0ABE7
    P41440    		 36071163
    144 7ura:A (3.11) BS05 AJP 2.3.1.250 GO:0005783 ... Q9H237 35831507
    145 7ura:H (3.11) BS01 AJP N/A N/A N/A 35831507
    146 7urc:A (3.14) BS09 AJP 2.3.1.250 GO:0005783 ... Q9H237 35831507
    147 7urd:A (2.92) BS05 AJP 2.3.1.250 GO:0005783 ... Q9H237 35831507
    148 7ure:A (3.19) BS02 AJP 2.3.1.250 GO:0005783 ... Q9H237 35831507
    149 7urf:A (2.8) BS05 AJP 2.3.1.- GO:0000139 ... Q5VTY9 35831507
    150 7urf:A (2.8) BS06 AJP 2.3.1.- GO:0000139 ... Q5VTY9 35831507
    151 7urf:A (2.8) BS07 AJP 2.3.1.- GO:0000139 ... Q5VTY9 35831507
    152 7urf:A (2.8) BS08 AJP 2.3.1.- GO:0000139 ... Q5VTY9 35831507
    153 7urf:A (2.8) BS09 AJP 2.3.1.- GO:0000139 ... Q5VTY9 35831507
    154 7uzq:Q (2.17) BS01 AJP ? GO:0005515 ... Q02094 35835865
    155 7uzq:Q (2.17) BS02 AJP ? GO:0005515 ... Q02094 35835865
    156 7v0k:Q (2.4) BS01 AJP ? GO:0005515 ... Q02094 35835865
    157 7v0k:Q (2.4) BS02 AJP ? GO:0005515 ... Q02094 35835865
    158 7v0s:Q (2.5) BS01 AJP ? GO:0005515 ... Q02094 35835865
    159 7wld:G (2.53) BS02 AJP ? GO:0003923 ... O43292 35551457
    160 7xzi:5 (2.77) BS01 AJP ? N/A A0A2K3DWN0
    A0A2K3DWN5    		 36702157
    161 7xzi:B (2.77) BS01 AJP ? GO:0009507 ... A8IZ79 36702157
    162 7xzi:B (2.77) BS02 AJP ? GO:0009507 ... A8IZ79 36702157
    163 7xzi:B (2.77) BS03 AJP ? GO:0009507 ... A8IZ79 36702157
    164 7xzi:D (2.77) BS01 AJP ? GO:0009507 ... A0A2K3E0K3 36702157
    165 7xzi:D (2.77) BS02 AJP ? GO:0009507 ... A0A2K3E0K3 36702157
    166 8cs9:Q (2.74) BS01 AJP ? GO:0005515 ... Q02094 35835865
    167 8csx:Q (2.4) BS01 AJP ? GO:0005515 ... Q02094 35835865
    168 8csx:Q (2.4) BS02 AJP ? GO:0005515 ... Q02094 35835865
    169 8cte:Q (2.9) BS01 AJP ? GO:0005515 ... Q02094 35835865
    170 8cte:Q (2.9) BS02 AJP ? GO:0005515 ... Q02094 35835865
    171 8dep:A (3.6) BS01 AJP ? GO:0005506 ... P0ABE7
    P41440    		 36071163
    172 8djk:A (3.33) BS06 AJP 1.1.1.34 N/A P00347 35879350
    173 8djk:B (3.33) BS01 AJP 2.5.1.39 GO:0004659 ... G3IEF0 35879350
    174 8djk:B (3.33) BS02 AJP 2.5.1.39 GO:0004659 ... G3IEF0 35879350
    175 8djm:A (3.23) BS04 AJP 1.1.1.34 N/A P00347 35879350
    176 8djm:B (3.23) BS01 AJP 2.5.1.39 GO:0004659 ... G3IEF0 35879350
    177 8djm:B (3.23) BS02 AJP 2.5.1.39 GO:0004659 ... G3IEF0 35879350
    178 8gyo:A (3.8) BS01 AJP ? GO:0002020 ... Q96RD7 N/A
    179 8gyo:B (3.8) BS01 AJP ? GO:0002020 ... Q96RD7 N/A
    180 8gyo:D (3.8) BS01 AJP ? GO:0002020 ... Q96RD7 N/A
    181 8gyo:E (3.8) BS01 AJP ? GO:0002020 ... Q96RD7 N/A
    182 8gyo:F (3.8) BS01 AJP ? GO:0002020 ... Q96RD7 N/A
    183 8imx:G (2.85) BS08 AJP ? GO:0003923 ... O43292 37684232
    184 8imy:G (3.22) BS01 AJP ? GO:0003923 ... O43292 37684232
    185 8qey:A (4.0) BS01 AJP ? GO:0003333 ... Q9NS82 38582862
    186 8ss2:A (3.58) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    187 8ss2:C (3.58) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    188 8ss3:A (3.21) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    189 8ss3:A (3.21) BS04 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    190 8ss3:A (3.21) BS06 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    191 8ss3:C (3.21) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    192 8ss3:C (3.21) BS04 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    193 8ss3:C (3.21) BS06 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    194 8ss3:D (3.21) BS01 AJP ? GO:0000149 ... P19491
    Q8VHW8    		 37653241
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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