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BioLiP
Download all results in tab-seperated text for 26 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1 1yhm:A (2.5) BS03 AHD 2.5.1.10 GO:0004659 ... Q8WS26 16288456 MOAD: ic50=147uM
    PDBbind: -logKd/Ki=3.83, IC50=147uM
    2 1yhm:B (2.5) BS03 AHD 2.5.1.10 GO:0004659 ... Q8WS26 16288456 MOAD: ic50=147uM
    3 1yhm:C (2.5) BS03 AHD 2.5.1.10 GO:0004659 ... Q8WS26 16288456 MOAD: ic50=147uM
    4 2f92:F (2.15) BS04 AHD 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 16892359
    5 3sdt:A (1.89) BS03 AHD 4.2.3.38 GO:0000287 ... O81086 22153510
    6 4kqu:A (2.07) BS04 AHD 2.5.1.1
    2.5.1.10    		 GO:0004659 ... P14324 N/A
    7 6ggj:A (2.1) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 30266969
    8 6ggj:B (2.1) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 30266969
    9 7ao0:A (1.93) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    10 7ao0:B (1.93) BS02 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    11 7ao1:A (1.8) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    12 7ao1:B (1.8) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    13 7ao2:A (1.75) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    14 7ao2:B (1.75) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    15 7ao3:A (1.45) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    16 7ao3:B (1.45) BS02 AHD 4.2.3.146 GO:0016829 ... C9K1X5 33289561
    17 7ofl:A (1.83) BS01 AHD 4.2.3.- GO:0016829 ... A0A5M3MXY8 35440053
    18 7ofl:B (1.83) BS01 AHD 4.2.3.- GO:0016829 ... A0A5M3MXY8 35440053
    19 8b4l:A (3.394) BS03 AHD 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0016829 ... D5SK09 N/A
    20 8b4l:B (3.394) BS03 AHD 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0016829 ... D5SK09 N/A
    21 8b4l:C (3.394) BS04 AHD 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0016829 ... D5SK09 N/A
    22 8b4l:D (3.394) BS03 AHD 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0016829 ... D5SK09 N/A
    23 8b4l:E (3.394) BS04 AHD 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0016829 ... D5SK09 N/A
    24 8b4l:F (3.394) BS02 AHD 4.2.3.201
    4.2.3.202
    4.2.3.203    		 GO:0016829 ... D5SK09 N/A
    25 8qws:A (1.6) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 N/A
    26 8qws:B (1.6) BS01 AHD 4.2.3.146 GO:0016829 ... C9K1X5 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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