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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 2564 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1601 7st9:A (2.2) BS03 AGS ? GO:0000077 ... P32641 35314831
    1602 7st9:B (2.2) BS02 AGS ? GO:0000077 ... P40339 35314831
    1603 7st9:C (2.2) BS02 AGS ? GO:0000077 ... P38629 35314831
    1604 7st9:C (2.2) BS04 AGS ? GO:0000077 ... P38629 35314831
    1605 7st9:D (2.2) BS01 AGS ? GO:0000076 ... P40348 35314831
    1606 7st9:D (2.2) BS02 AGS ? GO:0000076 ... P40348 35314831
    1607 7st9:E (2.2) BS02 AGS ? GO:0000077 ... P38251 35314831
    1608 7stb:A (2.72) BS03 AGS ? GO:0000077 ... P32641 35314831
    1609 7stb:B (2.72) BS03 AGS ? GO:0000077 ... P40339 35314831
    1610 7stb:C (2.72) BS03 AGS ? GO:0000077 ... P38629 35314831
    1611 7stb:D (2.72) BS02 AGS ? GO:0000076 ... P40348 35314831
    1612 7stb:D (2.72) BS04 AGS ? GO:0000076 ... P40348 35314831
    1613 7stb:E (2.72) BS01 AGS ? GO:0000077 ... P38251 35314831
    1614 7tfh:A (3.09) BS05 AGS ? GO:0000278 ... P38630 35829698
    1615 7tfh:B (3.09) BS02 AGS ? GO:0000077 ... P40339 35829698
    1616 7tfh:C (3.09) BS02 AGS ? GO:0000077 ... P38629 35829698
    1617 7tfh:D (3.09) BS01 AGS ? GO:0000076 ... P40348 35829698
    1618 7tfi:A (3.41) BS03 AGS ? GO:0000278 ... P38630 35829698
    1619 7tfi:B (3.41) BS03 AGS ? GO:0000077 ... P40339 35829698
    1620 7tfi:C (3.41) BS02 AGS ? GO:0000077 ... P38629 35829698
    1621 7tfi:D (3.41) BS01 AGS ? GO:0000076 ... P40348 35829698
    1622 7tfj:A (3.3) BS03 AGS ? GO:0000278 ... P38630 35829698
    1623 7tfj:B (3.3) BS02 AGS ? GO:0000077 ... P40339 35829698
    1624 7tfj:C (3.3) BS02 AGS ? GO:0000077 ... P38629 35829698
    1625 7tfj:D (3.3) BS02 AGS ? GO:0000076 ... P40348 35829698
    1626 7tfk:A (3.25) BS05 AGS ? GO:0000278 ... P38630 35829698
    1627 7tfk:B (3.25) BS02 AGS ? GO:0000077 ... P40339 35829698
    1628 7tfk:C (3.25) BS02 AGS ? GO:0000077 ... P38629 35829698
    1629 7tfk:D (3.25) BS02 AGS ? GO:0000076 ... P40348 35829698
    1630 7tfk:D (3.25) BS03 AGS ? GO:0000076 ... P40348 35829698
    1631 7tfk:E (3.25) BS02 AGS ? GO:0000077 ... P38251 35829698
    1632 7tfl:A (3.33) BS03 AGS ? GO:0000278 ... P38630 35829698
    1633 7tfl:B (3.33) BS02 AGS ? GO:0000077 ... P40339 35829698
    1634 7tfl:C (3.33) BS02 AGS ? GO:0000077 ... P38629 35829698
    1635 7tfl:D (3.33) BS01 AGS ? GO:0000076 ... P40348 35829698
    1636 7tfl:D (3.33) BS02 AGS ? GO:0000076 ... P40348 35829698
    1637 7tfl:E (3.33) BS02 AGS ? GO:0000077 ... P38251 35829698
    1638 7thj:A (3.8) BS01 AGS ? GO:0000278 ... P38630 35179493
    1639 7thj:B (3.8) BS01 AGS ? GO:0000077 ... P40339 35179493
    1640 7thj:B (3.8) BS02 AGS ? GO:0000077 ... P40339 35179493
    1641 7thj:C (3.8) BS01 AGS ? GO:0000077 ... P38629 35179493
    1642 7thj:D (3.8) BS01 AGS ? GO:0000076 ... P40348 35179493
    1643 7thv:A (4.0) BS01 AGS ? GO:0000278 ... P38630 35179493
    1644 7thv:B (4.0) BS01 AGS ? GO:0000077 ... P40339 35179493
    1645 7thv:C (4.0) BS01 AGS ? GO:0000077 ... P38629 35179493
    1646 7thv:D (4.0) BS01 AGS ? GO:0000076 ... P40348 35179493
    1647 7ti8:A (3.5) BS01 AGS ? GO:0000278 ... P38630 35179493
    1648 7ti8:B (3.5) BS01 AGS ? GO:0000077 ... P40339 35179493
    1649 7ti8:B (3.5) BS02 AGS ? GO:0000077 ... P40339 35179493
    1650 7ti8:C (3.5) BS01 AGS ? GO:0000077 ... P38629 35179493
    1651 7ti8:D (3.5) BS01 AGS ? GO:0000076 ... P40348 35179493
    1652 7tib:A (3.4) BS03 AGS ? GO:0000278 ... P38630 35179493
    1653 7tib:B (3.4) BS02 AGS ? GO:0000077 ... P40339 35179493
    1654 7tib:B (3.4) BS03 AGS ? GO:0000077 ... P40339 35179493
    1655 7tib:C (3.4) BS02 AGS ? GO:0000077 ... P38629 35179493
    1656 7tib:D (3.4) BS02 AGS ? GO:0000076 ... P40348 35179493
    1657 7tib:E (3.4) BS02 AGS ? GO:0000077 ... P38251 35179493
    1658 7tic:A (3.9) BS01 AGS ? GO:0000278 ... P38630 35179493
    1659 7tic:B (3.9) BS01 AGS ? GO:0000077 ... P40339 35179493
    1660 7tic:C (3.9) BS01 AGS ? GO:0000077 ... P38629 35179493
    1661 7tic:D (3.9) BS01 AGS ? GO:0000076 ... P40348 35179493
    1662 7tid:A (3.3) BS03 AGS ? GO:0000278 ... P38630 35179493
    1663 7tid:B (3.3) BS02 AGS ? GO:0000077 ... P40339 35179493
    1664 7tid:B (3.3) BS03 AGS ? GO:0000077 ... P40339 35179493
    1665 7tid:C (3.3) BS02 AGS ? GO:0000077 ... P38629 35179493
    1666 7tid:D (3.3) BS02 AGS ? GO:0000076 ... P40348 35179493
    1667 7tid:E (3.3) BS02 AGS ? GO:0000077 ... P38251 35179493
    1668 7tku:A (4.0) BS01 AGS ? GO:0000278 ... P38630 35179493
    1669 7tku:B (4.0) BS01 AGS ? GO:0000077 ... P40339 35179493
    1670 7tku:B (4.0) BS02 AGS ? GO:0000077 ... P40339 35179493
    1671 7tku:C (4.0) BS01 AGS ? GO:0000077 ... P38629 35179493
    1672 7tku:D (4.0) BS01 AGS ? GO:0000076 ... P40348 35179493
    1673 7ttr:B (2.96) BS02 AGS 3.6.1.- GO:0005524 ... Q9H078 36170828
    1674 7ttr:B (2.96) BS03 AGS 3.6.1.- GO:0005524 ... Q9H078 36170828
    1675 7ttr:C (2.96) BS02 AGS 3.6.1.- GO:0005524 ... Q9H078 36170828
    1676 7ttr:C (2.96) BS03 AGS 3.6.1.- GO:0005524 ... Q9H078 36170828
    1677 7ttr:D (2.96) BS02 AGS 3.6.1.- GO:0005524 ... Q9H078 36170828
    1678 7ttr:E (2.96) BS02 AGS 3.6.1.- GO:0005524 ... Q9H078 36170828
    1679 7tts:B (2.9) BS02 AGS 3.6.1.- GO:0005524 ... Q9H078 36170828
    1680 7tts:B (2.9) BS03 AGS 3.6.1.- GO:0005524 ... Q9H078 36170828
    1681 7tts:C (2.9) BS02 AGS 3.6.1.- GO:0005524 ... Q9H078 36170828
    1682 7tts:C (2.9) BS03 AGS 3.6.1.- GO:0005524 ... Q9H078 36170828
    1683 7tts:D (2.9) BS02 AGS 3.6.1.- GO:0005524 ... Q9H078 36170828
    1684 7tts:E (2.9) BS02 AGS 3.6.1.- GO:0005524 ... Q9H078 36170828
    1685 7u19:A (3.7) BS04 AGS ? GO:0000278 ... P38630 35731107
    1686 7u19:B (3.7) BS03 AGS ? GO:0000077 ... P40339 35731107
    1687 7u19:C (3.7) BS02 AGS ? GO:0000077 ... P38629 35731107
    1688 7u19:C (3.7) BS03 AGS ? GO:0000077 ... P38629 35731107
    1689 7u19:D (3.7) BS01 AGS ? GO:0000076 ... P40348 35731107
    1690 7u1a:A (3.3) BS04 AGS ? GO:0000278 ... P38630 35731107
    1691 7u1a:B (3.3) BS02 AGS ? GO:0000077 ... P40339 35731107
    1692 7u1a:C (3.3) BS02 AGS ? GO:0000077 ... P38629 35731107
    1693 7u1a:D (3.3) BS02 AGS ? GO:0000076 ... P40348 35731107
    1694 7u1a:E (3.3) BS02 AGS ? GO:0000077 ... P38251 35731107
    1695 7u1p:A (3.0) BS04 AGS ? GO:0000278 ... P38630 35731107
    1696 7u1p:C (3.0) BS02 AGS ? GO:0000077 ... P38629 35731107
    1697 7u1p:D (3.0) BS02 AGS ? GO:0000076 ... P40348 35731107
    1698 7u1p:E (3.0) BS01 AGS ? GO:0000077 ... P38251 35731107
    1699 7uiv:A (3.38) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1700 7uiv:B (3.38) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1701 7uiv:B (3.38) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1702 7uiv:B (3.38) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1703 7uiv:C (3.38) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1704 7uiv:C (3.38) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1705 7uiv:D (3.38) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1706 7uiv:D (3.38) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1707 7uiv:E (3.38) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1708 7uiv:E (3.38) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1709 7uiw:A (3.33) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1710 7uiw:A (3.33) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1711 7uiw:B (3.33) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1712 7uiw:B (3.33) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1713 7uiw:B (3.33) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1714 7uiw:C (3.33) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1715 7uiw:C (3.33) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1716 7uiw:C (3.33) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1717 7uiw:D (3.33) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1718 7uiw:D (3.33) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1719 7uiw:D (3.33) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1720 7uiw:E (3.33) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1721 7uiw:E (3.33) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1722 7uix:B (3.24) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1723 7uix:B (3.24) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1724 7uix:C (3.24) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1725 7uix:C (3.24) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1726 7uix:D (3.24) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1727 7uix:D (3.24) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1728 7uix:D (3.24) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1729 7uix:E (3.24) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1730 7uix:E (3.24) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1731 7uix:E (3.24) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1732 7uix:E (3.24) BS05 AGS ? GO:0004176 ... P0ABH9 36329286
    1733 7uix:F (3.24) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1734 7uix:F (3.24) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1735 7uiy:A (3.22) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1736 7uiy:B (3.22) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1737 7uiy:B (3.22) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1738 7uiy:C (3.22) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1739 7uiy:C (3.22) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1740 7uiy:D (3.22) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1741 7uiy:D (3.22) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1742 7uiy:E (3.22) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1743 7uiy:F (3.22) BS01 AGS ? GO:0004176 ... P0ABH9 36329286
    1744 7uiz:A (3.24) BS01 AGS ? GO:0004176 ... P0ABH9 36329286
    1745 7uiz:A (3.24) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1746 7uiz:B (3.24) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1747 7uiz:B (3.24) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1748 7uiz:C (3.24) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1749 7uiz:C (3.24) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1750 7uiz:C (3.24) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1751 7uiz:D (3.24) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1752 7uiz:D (3.24) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1753 7uiz:D (3.24) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1754 7uiz:E (3.24) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1755 7uiz:F (3.24) BS01 AGS ? GO:0004176 ... P0ABH9 36329286
    1756 7uj0:A (3.26) BS01 AGS ? GO:0004176 ... P0ABH9 36329286
    1757 7uj0:B (3.26) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1758 7uj0:B (3.26) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1759 7uj0:C (3.26) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1760 7uj0:C (3.26) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1761 7uj0:C (3.26) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1762 7uj0:D (3.26) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1763 7uj0:D (3.26) BS03 AGS ? GO:0004176 ... P0ABH9 36329286
    1764 7uj0:D (3.26) BS04 AGS ? GO:0004176 ... P0ABH9 36329286
    1765 7uj0:E (3.26) BS02 AGS ? GO:0004176 ... P0ABH9 36329286
    1766 7uqj:A (3.0) BS03 AGS 3.6.1.- GO:0000122 ... P40340 36592926
    1767 7uqj:B (3.0) BS01 AGS 3.6.1.- GO:0000122 ... P40340 36592926
    1768 7uqj:B (3.0) BS02 AGS 3.6.1.- GO:0000122 ... P40340 36592926
    1769 7uqj:C (3.0) BS02 AGS 3.6.1.- GO:0000122 ... P40340 36592926
    1770 7uqj:C (3.0) BS03 AGS 3.6.1.- GO:0000122 ... P40340 36592926
    1771 7uqj:D (3.0) BS02 AGS 3.6.1.- GO:0000122 ... P40340 36592926
    1772 7uqj:D (3.0) BS03 AGS 3.6.1.- GO:0000122 ... P40340 36592926
    1773 7uqj:E (3.0) BS02 AGS 3.6.1.- GO:0000122 ... P40340 36592926
    1774 7uqj:E (3.0) BS03 AGS 3.6.1.- GO:0000122 ... P40340 36592926
    1775 7uqj:F (3.0) BS02 AGS 3.6.1.- GO:0000122 ... P40340 36592926
    1776 7us2:A (2.76) BS02 AGS 3.6.1.- GO:0005524 ... Q9H078 37163603
    1777 7us2:A (2.76) BS03 AGS 3.6.1.- GO:0005524 ... Q9H078 37163603
    1778 7us2:B (2.76) BS02 AGS 3.6.1.- GO:0005524 ... Q9H078 37163603
    1779 7us2:B (2.76) BS04 AGS 3.6.1.- GO:0005524 ... Q9H078 37163603
    1780 7us2:C (2.76) BS02 AGS 3.6.1.- GO:0005524 ... Q9H078 37163603
    1781 7us2:C (2.76) BS04 AGS 3.6.1.- GO:0005524 ... Q9H078 37163603
    1782 7us2:D (2.76) BS02 AGS 3.6.1.- GO:0005524 ... Q9H078 37163603
    1783 7us2:D (2.76) BS04 AGS 3.6.1.- GO:0005524 ... Q9H078 37163603
    1784 7us2:E (2.76) BS02 AGS 3.6.1.- GO:0005524 ... Q9H078 37163603
    1785 7us2:E (2.76) BS04 AGS 3.6.1.- GO:0005524 ... Q9H078 37163603
    1786 7us2:F (2.76) BS01 AGS 3.6.1.- GO:0005524 ... Q9H078 37163603
    1787 7v3u:2 (3.2) BS01 AGS 3.6.4.12 GO:0000727 ... P29469 35296675
    1788 7v3u:2 (3.2) BS03 AGS 3.6.4.12 GO:0000727 ... P29469 35296675
    1789 7v3u:3 (3.2) BS02 AGS 3.6.4.12 GO:0000727 ... P24279 35296675
    1790 7v3u:4 (3.2) BS01 AGS 3.6.4.12 GO:0000727 ... P30665 35296675
    1791 7v3u:4 (3.2) BS03 AGS 3.6.4.12 GO:0000727 ... P30665 35296675
    1792 7v3u:5 (3.2) BS02 AGS 3.6.4.12 GO:0000727 ... P29496 35296675
    1793 7v3u:6 (3.2) BS01 AGS 3.6.4.12 GO:0000727 ... P53091 35296675
    1794 7v3u:6 (3.2) BS02 AGS 3.6.4.12 GO:0000727 ... P53091 35296675
    1795 7v3u:7 (3.2) BS01 AGS 3.6.4.12 GO:0000727 ... P38132 35296675
    1796 7v3u:7 (3.2) BS02 AGS 3.6.4.12 GO:0000727 ... P38132 35296675
    1797 7v3u:B (3.2) BS01 AGS 3.6.4.12 GO:0000727 ... P29469 35296675
    1798 7v3u:B (3.2) BS03 AGS 3.6.4.12 GO:0000727 ... P29469 35296675
    1799 7v3u:C (3.2) BS02 AGS 3.6.4.12 GO:0000727 ... P24279 35296675
    1800 7v3u:D (3.2) BS01 AGS 3.6.4.12 GO:0000727 ... P30665 35296675
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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